Wall clock time and date at job start Wed Apr 1 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38623 * 120.76084 * 2 1 4 4 C 1.38555 * 119.35733 * 180.27661 * 3 2 1 5 5 C 1.50700 * 119.55032 * 179.74806 * 4 3 2 6 6 N 1.31522 * 120.90241 * 359.71732 * 4 3 2 7 7 C 1.32722 * 121.64305 * 0.02562 * 6 4 3 8 8 C 1.48166 * 119.72607 * 179.97438 * 7 6 4 9 9 O 1.21516 * 120.00099 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99705 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99843 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47037 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.43738 * 59.92394 * 12 11 10 14 14 C 1.53148 * 109.43659 * 179.79297 * 12 11 10 15 15 C 1.53700 * 108.88127 * 66.17323 * 14 12 11 16 16 H 1.08995 * 112.58879 * 187.93043 * 15 14 12 17 17 C 1.54607 * 107.83069 * 312.23063 * 15 14 12 18 18 C 1.54312 * 104.75327 * 88.65679 * 17 15 14 19 19 C 1.54607 * 104.75044 * 0.02562 * 18 17 15 20 20 H 1.09000 * 112.69569 * 147.07170 * 19 18 17 21 21 C 1.53148 * 109.43348 * 300.01479 * 12 11 10 22 22 N 1.48295 * 104.26199 * 25.13202 * 19 18 17 23 23 C 1.36935 * 128.21098 * 138.39006 * 22 19 18 24 24 H 1.07996 * 120.00331 * 348.93222 * 23 22 19 25 25 C 1.38815 * 119.99745 * 168.93704 * 23 22 19 26 26 N 1.31616 * 120.00398 * 340.23978 * 25 23 22 27 27 Si 1.86806 * 119.99906 * 160.24095 * 25 23 22 28 28 H 1.48500 * 109.46885 * 84.99159 * 27 25 23 29 29 H 1.48497 * 109.47205 * 204.99616 * 27 25 23 30 30 H 1.48498 * 109.46871 * 324.99456 * 27 25 23 31 31 C 1.38593 * 120.75510 * 179.74928 * 2 1 3 32 32 H 1.08997 * 109.46644 * 270.24946 * 1 2 3 33 33 H 1.09000 * 109.47072 * 30.24936 * 1 2 3 34 34 H 1.08996 * 109.46799 * 150.25146 * 1 2 3 35 35 H 1.08006 * 120.32179 * 359.97438 * 3 2 1 36 36 H 1.09001 * 109.46863 * 269.96796 * 5 4 3 37 37 H 1.08997 * 109.47218 * 29.97196 * 5 4 3 38 38 H 1.09006 * 109.46758 * 149.97547 * 5 4 3 39 39 H 0.96996 * 120.00501 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47208 * 299.99566 * 11 10 8 41 41 H 1.08994 * 109.47055 * 59.99957 * 11 10 8 42 42 H 1.09003 * 109.57363 * 185.99287 * 14 12 11 43 43 H 1.09002 * 109.56779 * 306.35861 * 14 12 11 44 44 H 1.08998 * 110.38618 * 207.47869 * 17 15 14 45 45 H 1.09005 * 110.38459 * 329.83814 * 17 15 14 46 46 H 1.08994 * 110.38372 * 241.18725 * 18 17 15 47 47 H 1.09010 * 110.37814 * 118.82050 * 18 17 15 48 48 H 1.08995 * 109.57252 * 53.64379 * 21 12 11 49 49 H 1.09003 * 109.56829 * 174.01322 * 21 12 11 50 50 H 0.97002 * 120.00566 * 179.97438 * 26 25 23 51 51 H 1.07997 * 120.46863 * 0.02662 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6011 1.1573 -0.0058 5 6 4.3762 2.4497 -0.0116 6 7 4.2488 0.0126 -0.0058 7 6 3.6082 -1.1498 -0.0007 8 6 4.3805 -2.4143 -0.0014 9 8 3.7992 -3.4814 0.0028 10 7 5.7278 -2.3809 -0.0067 11 6 6.4915 -3.6312 -0.0080 12 6 7.9884 -3.3145 -0.0136 13 1 8.2397 -2.7344 0.8743 14 6 8.7859 -4.6219 -0.0098 15 6 8.5397 -5.3586 -1.3360 16 1 8.9676 -6.3611 -1.3438 17 6 7.0154 -5.3723 -1.5941 18 6 6.7362 -4.0670 -2.3682 19 6 8.1181 -3.3876 -2.5058 20 1 8.2196 -2.8246 -3.4336 21 6 8.3329 -2.5036 -1.2663 22 7 9.0861 -4.5079 -2.4212 23 6 10.2163 -4.7089 -3.1676 24 1 10.4000 -4.1038 -4.0431 25 6 11.1260 -5.6906 -2.7990 26 7 11.1296 -6.1556 -1.5678 27 14 12.3451 -6.3516 -4.0506 28 1 13.5360 -5.4657 -4.0971 29 1 12.7624 -7.7219 -3.6592 30 1 11.7059 -6.3924 -5.3903 31 6 2.2157 -1.1910 0.0052 32 1 -0.3632 0.0045 1.0277 33 1 -0.3633 0.8877 -0.5177 34 1 -0.3633 -0.8922 -0.5099 35 1 1.6937 2.1366 -0.0004 36 1 4.5592 2.7589 -1.0407 37 1 3.8019 3.2201 0.5027 38 1 5.3284 2.3045 0.4989 39 1 6.1919 -1.5292 -0.0104 40 1 6.2460 -4.2079 0.8837 41 1 6.2390 -4.2103 -0.8962 42 1 9.8484 -4.4012 0.0935 43 1 8.4585 -5.2468 0.8212 44 1 6.7402 -6.2376 -2.1971 45 1 6.4705 -5.3777 -0.6500 46 1 6.0541 -3.4301 -1.8051 47 1 6.3236 -4.2901 -3.3523 48 1 7.6850 -1.6291 -1.3248 49 1 9.3747 -2.1861 -1.2206 50 1 11.7650 -6.8418 -1.3103 51 1 1.6958 -2.1376 0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048541713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:45 Heat of formation + Delta-G solvation = 110.501879 kcal Electronic energy + Delta-G solvation = -31083.242726 eV Core-core repulsion = 27179.643718 eV Total energy + Delta-G solvation = -3903.599007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.33153 -40.62655 -38.59467 -34.86932 -34.39629 -33.12807 -32.55742 -31.38563 -30.64247 -29.63568 -28.32903 -27.84354 -26.79771 -24.60649 -23.31454 -23.09357 -21.52038 -20.63912 -20.49150 -19.35985 -18.79098 -17.74065 -16.99671 -16.75494 -16.25589 -15.77597 -15.38567 -15.10956 -14.66373 -14.41939 -14.20867 -13.81907 -13.68524 -13.48939 -13.15211 -12.98630 -12.91450 -12.70512 -12.62037 -12.50760 -12.36430 -11.98610 -11.92981 -11.68214 -11.51276 -11.33081 -11.17093 -10.85395 -10.77389 -10.50224 -10.29463 -10.12862 -9.82261 -9.80274 -9.59863 -9.46551 -9.40441 -9.32153 -9.21786 -9.17301 -8.53142 -8.10567 -6.81456 -5.76753 -3.02342 0.47971 0.92551 2.72636 3.25865 3.40871 3.48163 3.50283 3.70530 3.90872 4.24378 4.50150 4.51869 4.68592 4.78884 5.00462 5.12175 5.15077 5.26365 5.26612 5.31190 5.32776 5.38686 5.47903 5.49336 5.51848 5.62530 5.72231 5.80075 5.81050 5.85587 5.94571 5.95111 6.11954 6.14637 6.22038 6.33196 6.36092 6.45720 6.46625 6.61372 6.68819 6.71194 6.79438 6.91446 6.99607 7.10063 7.14995 7.48197 7.55961 7.60858 7.78136 7.81537 8.23544 8.35036 9.15331 9.80158 10.59279 11.37238 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.002553 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.511996 B =10964.164092 C =11386.773446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.157 4.157 4 C 0.129 3.871 5 C -0.104 4.104 6 N -0.463 5.463 7 C 0.094 3.906 8 C 0.561 3.439 9 O -0.539 6.539 10 N -0.697 5.697 11 C 0.000 4.000 12 C -0.085 4.085 13 H 0.051 0.949 14 C -0.109 4.109 15 C 0.182 3.818 16 H 0.104 0.896 17 C -0.172 4.172 18 C -0.162 4.162 19 C 0.152 3.848 20 H 0.065 0.935 21 C -0.125 4.125 22 N -0.583 5.583 23 C -0.224 4.224 24 H 0.075 0.925 25 C -0.004 4.004 26 N -0.906 5.906 27 Si 0.901 3.099 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.283 1.283 31 C -0.123 4.123 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.405 0.595 40 H 0.052 0.948 41 H 0.196 0.804 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.043 0.957 49 H 0.063 0.937 50 H 0.252 0.748 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 15.291 5.117 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.177 4.177 4 C -0.011 4.011 5 C -0.161 4.161 6 N -0.176 5.176 7 C -0.044 4.044 8 C 0.345 3.655 9 O -0.416 6.416 10 N -0.347 5.347 11 C -0.118 4.118 12 C -0.104 4.104 13 H 0.070 0.930 14 C -0.149 4.149 15 C 0.075 3.925 16 H 0.122 0.878 17 C -0.210 4.210 18 C -0.200 4.200 19 C 0.044 3.956 20 H 0.083 0.917 21 C -0.165 4.165 22 N -0.304 5.304 23 C -0.353 4.353 24 H 0.093 0.907 25 C -0.202 4.202 26 N -0.551 5.551 27 Si 0.731 3.269 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.209 1.209 31 C -0.144 4.144 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.241 0.759 40 H 0.070 0.930 41 H 0.211 0.789 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.062 0.938 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.080 14.323 5.092 23.621 hybrid contribution 0.116 0.262 -0.302 0.416 sum -17.963 14.585 4.790 23.629 Atomic orbital electron populations 1.20834 0.89709 1.03612 1.03090 1.20343 0.97082 0.92552 0.95511 1.22033 0.94785 0.98830 1.02093 1.21297 0.91182 0.93820 0.94772 1.20738 1.00463 0.91538 1.03411 1.67409 1.41055 0.97584 1.11569 1.21289 0.91753 0.92215 0.99187 1.17837 0.82715 0.87143 0.77803 1.90773 1.70066 1.29889 1.50896 1.46248 1.05453 1.11483 1.71524 1.25342 0.91883 0.86272 1.08346 1.21266 0.92824 0.98763 0.97565 0.93009 1.22017 1.00535 0.93767 0.98609 1.21426 0.87596 0.96844 0.86651 0.87830 1.23507 1.01063 0.96638 0.99793 1.23402 0.99399 0.97611 0.99627 1.21499 0.89117 0.89937 0.95067 0.91707 1.22207 1.00769 0.96989 0.96486 1.45225 1.24327 1.20762 1.40107 1.18926 0.96395 1.16316 1.03615 0.90738 1.24703 0.98024 1.01357 0.96081 1.69971 1.38391 1.31673 1.15107 0.86314 0.80895 0.78403 0.81243 1.21678 1.21662 1.20868 1.22011 0.93899 0.99530 0.98915 0.90328 0.90858 0.90646 0.84493 0.90113 0.90647 0.90123 0.75925 0.92993 0.78883 0.90149 0.94032 0.92608 0.89329 0.88905 0.92977 0.93843 0.91825 0.93763 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.06 36.01 0.36 -0.29 16 2 C -0.05 -0.42 5.91 -104.35 -0.62 -1.03 16 3 C -0.16 -1.29 9.45 -39.32 -0.37 -1.66 16 4 C 0.13 1.27 6.78 -82.61 -0.56 0.71 16 5 C -0.10 -0.71 10.17 36.01 0.37 -0.34 16 6 N -0.46 -5.79 9.45 -6.06 -0.06 -5.84 16 7 C 0.09 1.27 6.75 -83.01 -0.56 0.71 16 8 C 0.56 8.87 7.57 -12.18 -0.09 8.78 16 9 O -0.54 -9.82 16.32 5.35 0.09 -9.74 16 10 N -0.70 -10.62 4.37 -61.15 -0.27 -10.88 16 11 C 0.00 0.00 2.68 -4.04 -0.01 -0.01 16 12 C -0.09 -1.52 2.76 -90.47 -0.25 -1.77 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.11 -2.28 5.33 -26.29 -0.14 -2.42 16 15 C 0.18 4.14 3.16 -65.72 -0.21 3.93 16 16 H 0.10 2.70 6.47 -51.93 -0.34 2.36 16 17 C -0.17 -3.33 5.72 -25.20 -0.14 -3.48 16 18 C -0.16 -3.01 5.72 -25.20 -0.14 -3.15 16 19 C 0.15 3.10 4.32 -65.71 -0.28 2.81 16 20 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 21 C -0.12 -2.29 5.28 -26.27 -0.14 -2.42 16 22 N -0.58 -14.22 2.82 -152.72 -0.43 -14.65 16 23 C -0.22 -6.09 10.33 -15.06 -0.16 -6.24 16 24 H 0.07 1.98 7.90 -52.49 -0.41 1.57 16 25 C 0.00 -0.12 5.30 -17.43 -0.09 -0.21 16 26 N -0.91 -25.53 11.01 55.49 0.61 -24.92 16 27 Si 0.90 21.74 29.60 -169.99 -5.03 16.71 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 C -0.12 -1.41 9.34 -39.05 -0.36 -1.77 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 34 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.40 5.76 6.64 -40.82 -0.27 5.49 16 40 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 41 H 0.20 3.43 1.12 -165.82 -0.19 3.24 16 42 H 0.08 1.94 8.08 -51.93 -0.42 1.52 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.60 4.84 -51.93 -0.25 1.35 16 46 H 0.09 1.62 3.94 -51.93 -0.20 1.42 16 47 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 48 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.15 1.64 7.64 -52.49 -0.40 1.24 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -30.79 386.80 -10.54 -41.33 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -7.87 Total: 10.02 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.41 Total: -7.85 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.14 Total: -56.30 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.79 -10.54 -41.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048541713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.829 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds