Wall clock time and date at job start Wed Apr 1 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38633 * 120.31797 * 2 1 4 4 C 1.38593 * 118.48428 * 179.97438 * 3 2 1 5 5 C 1.39304 * 119.05892 * 359.97438 * 4 3 2 6 6 C 1.48170 * 119.72407 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99779 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00386 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00062 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46874 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.43723 * 300.04611 * 10 9 8 12 12 C 1.53146 * 109.43716 * 59.96093 * 10 9 8 13 13 C 1.53705 * 108.87593 * 66.17421 * 12 10 9 14 14 H 1.09005 * 112.09827 * 187.61466 * 13 12 10 15 15 C 1.54602 * 107.83242 * 312.22795 * 13 12 10 16 16 C 1.54821 * 104.65386 * 88.55207 * 15 13 12 17 17 C 1.54610 * 104.65345 * 0.02562 * 16 15 13 18 18 H 1.08997 * 112.69983 * 147.18814 * 17 16 15 19 19 C 1.53152 * 109.43478 * 180.18427 * 10 9 8 20 20 N 1.48293 * 107.27530 * 64.01093 * 13 12 10 21 21 C 1.36933 * 128.21290 * 107.39713 * 20 13 12 22 22 H 1.07995 * 120.00518 * 164.81230 * 21 20 13 23 23 C 1.38817 * 119.99939 * 344.80809 * 21 20 13 24 24 N 1.31627 * 119.99649 * 351.63272 * 23 21 20 25 25 Si 1.86797 * 120.00110 * 171.62701 * 23 21 20 26 26 H 1.48497 * 109.47182 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.46868 * 300.00157 * 25 23 21 28 28 H 1.48499 * 109.47144 * 60.00066 * 25 23 21 29 29 N 1.32721 * 120.55642 * 0.26059 * 5 4 3 30 30 C 1.31526 * 121.63973 * 359.46773 * 29 5 4 31 31 C 1.50700 * 119.54859 * 180.26950 * 30 29 5 32 32 H 1.09006 * 109.46805 * 89.99899 * 1 2 3 33 33 H 1.08994 * 109.46745 * 209.99672 * 1 2 3 34 34 H 1.08998 * 109.47480 * 330.00690 * 1 2 3 35 35 H 1.07995 * 120.75887 * 359.97438 * 3 2 1 36 36 H 1.07992 * 120.46901 * 180.02562 * 4 3 2 37 37 H 0.97005 * 119.99563 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.47285 * 59.99992 * 9 8 6 39 39 H 1.08995 * 109.47385 * 300.00050 * 9 8 6 40 40 H 1.09001 * 109.56536 * 306.35724 * 12 10 9 41 41 H 1.08994 * 109.66835 * 186.05089 * 12 10 9 42 42 H 1.09003 * 110.38351 * 207.48734 * 15 13 12 43 43 H 1.09001 * 110.38567 * 329.84792 * 15 13 12 44 44 H 1.08995 * 110.33754 * 241.26351 * 16 15 13 45 45 H 1.09003 * 110.52611 * 118.83168 * 16 15 13 46 46 H 1.08999 * 109.56960 * 53.63928 * 19 10 9 47 47 H 1.08992 * 109.57446 * 173.88429 * 19 10 9 48 48 H 0.96999 * 119.99411 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.47395 * 270.26081 * 31 30 29 50 50 H 1.08998 * 109.47186 * 30.25912 * 31 30 29 51 51 H 1.08996 * 109.47052 * 150.25580 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1967 0.0000 4 6 3.5921 1.1524 0.0005 5 6 4.2294 -0.0863 0.0016 6 6 5.7097 -0.1509 0.0016 7 8 6.3626 0.8740 0.0012 8 7 6.3321 -1.3464 0.0021 9 6 7.7957 -1.4101 0.0027 10 6 8.2423 -2.8735 0.0026 11 1 7.8556 -3.3709 0.8920 12 6 7.7002 -3.5717 -1.2480 13 6 8.3707 -2.9607 -2.4888 14 1 7.9278 -3.3253 -3.4157 15 6 8.2971 -1.4220 -2.3573 16 6 9.5774 -1.0338 -1.5782 17 6 10.2982 -2.3764 -1.3166 18 1 11.3837 -2.2774 -1.3135 19 6 9.7724 -2.9393 0.0078 20 7 9.8193 -3.2660 -2.4018 21 6 10.5423 -4.1612 -3.1440 22 1 11.6211 -4.1114 -3.1495 23 6 9.8886 -5.1328 -3.8895 24 7 8.5899 -5.3010 -3.7568 25 14 10.8520 -6.2014 -5.0808 26 1 9.9291 -7.1533 -5.7495 27 1 11.5015 -5.3417 -6.1027 28 1 11.8913 -6.9582 -4.3376 29 7 3.5218 -1.2092 -0.0031 30 6 2.2066 -1.1959 0.0015 31 6 1.4503 -2.4994 0.0020 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 1.6846 2.1420 -0.0004 36 1 4.1692 2.0652 0.0010 37 1 5.8109 -2.1645 0.0021 38 1 8.1807 -0.9124 0.8927 39 1 8.1814 -0.9128 -0.8871 40 1 6.6214 -3.4277 -1.3077 41 1 7.9242 -4.6373 -1.1994 42 1 8.2935 -0.9565 -3.3429 43 1 7.4093 -1.1310 -1.7959 44 1 9.3161 -0.5529 -0.6356 45 1 10.2061 -0.3767 -2.1792 46 1 10.1605 -2.3476 0.8370 47 1 10.0930 -3.9753 0.1172 48 1 8.1331 -5.9797 -4.2780 49 1 1.2684 -2.8143 -1.0255 50 1 2.0375 -3.2600 0.5165 51 1 0.4980 -2.3666 0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048545672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:16 Heat of formation + Delta-G solvation = 113.145639 kcal Electronic energy + Delta-G solvation = -31251.090110 eV Core-core repulsion = 27347.605744 eV Total energy + Delta-G solvation = -3903.484365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.29038 -40.61244 -38.58989 -34.71563 -34.16334 -33.23526 -32.74128 -31.34557 -30.32468 -29.91633 -28.65969 -27.81392 -26.32270 -23.85325 -23.19655 -23.09928 -22.18205 -20.60481 -20.46518 -19.39209 -18.79765 -17.86055 -16.99291 -16.82716 -15.92943 -15.39836 -15.37193 -15.01781 -14.70568 -14.55236 -14.25381 -13.77548 -13.47214 -13.43110 -13.19886 -13.00370 -12.89038 -12.78161 -12.58485 -12.41270 -12.30708 -11.94483 -11.72869 -11.64967 -11.38538 -11.34795 -11.19380 -10.79110 -10.68768 -10.53299 -10.25988 -10.09838 -9.97437 -9.79151 -9.55376 -9.46016 -9.36524 -9.30073 -9.15847 -9.00179 -8.55751 -8.05446 -6.75431 -5.72353 -3.07092 0.52090 1.02348 2.78071 3.33554 3.41034 3.46216 3.46714 3.77495 3.98192 4.39330 4.50132 4.55261 4.57488 4.79878 5.03923 5.14463 5.28323 5.29178 5.35452 5.35730 5.37929 5.42531 5.51315 5.54396 5.59741 5.65421 5.80210 5.81801 5.86449 5.88951 5.97616 5.98554 6.12216 6.15907 6.21979 6.32487 6.42208 6.48329 6.53797 6.63288 6.70795 6.77306 6.85296 6.89701 7.00010 7.12427 7.17972 7.54781 7.61582 7.64336 7.81248 7.87832 8.29320 8.41104 9.18198 9.80232 10.60265 11.39562 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.002915 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.733515 B = 9602.111271 C =10648.211497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.117 4.117 5 C 0.083 3.917 6 C 0.562 3.438 7 O -0.542 6.542 8 N -0.695 5.695 9 C 0.001 3.999 10 C -0.087 4.087 11 H 0.050 0.950 12 C -0.111 4.111 13 C 0.183 3.817 14 H 0.110 0.890 15 C -0.174 4.174 16 C -0.160 4.160 17 C 0.148 3.852 18 H 0.066 0.934 19 C -0.121 4.121 20 N -0.584 5.584 21 C -0.221 4.221 22 H 0.074 0.926 23 C -0.006 4.006 24 N -0.912 5.912 25 Si 0.909 3.091 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.286 1.286 29 N -0.453 5.453 30 C 0.126 3.874 31 C -0.108 4.108 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.406 0.594 38 H 0.048 0.952 39 H 0.196 0.804 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.252 0.748 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 10.098 9.306 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.138 4.138 5 C -0.055 4.055 6 C 0.347 3.653 7 O -0.420 6.420 8 N -0.345 5.345 9 C -0.117 4.117 10 C -0.106 4.106 11 H 0.069 0.931 12 C -0.150 4.150 13 C 0.076 3.924 14 H 0.128 0.872 15 C -0.213 4.213 16 C -0.199 4.199 17 C 0.040 3.960 18 H 0.085 0.915 19 C -0.161 4.161 20 N -0.304 5.304 21 C -0.350 4.350 22 H 0.091 0.909 23 C -0.203 4.203 24 N -0.559 5.559 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.212 1.212 29 N -0.165 5.165 30 C -0.015 4.015 31 C -0.165 4.165 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.243 0.757 38 H 0.066 0.934 39 H 0.211 0.789 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.892 9.762 9.126 20.009 hybrid contribution -0.282 -0.314 -0.342 0.543 sum -15.174 9.447 8.784 19.916 Atomic orbital electron populations 1.20858 0.89995 1.03375 1.02930 1.20928 0.97696 0.93614 1.00136 1.21482 0.93642 0.98307 0.97392 1.22099 0.94827 0.99120 0.97714 1.21263 0.94538 0.89493 1.00216 1.17831 0.85557 0.84284 0.77668 1.90757 1.65831 1.34207 1.51212 1.46195 1.08843 1.08093 1.71404 1.25280 0.78110 1.00328 1.08010 1.21269 0.96671 0.93655 0.99006 0.93109 1.22060 0.97069 1.01204 0.94688 1.21475 0.85400 0.87766 0.97751 0.87225 1.23646 0.97264 1.01246 0.99107 1.23457 0.97289 0.99067 1.00049 1.21447 0.96328 0.89764 0.88433 0.91539 1.22049 0.94171 1.01530 0.98336 1.45162 1.04840 1.43796 1.36651 1.18947 0.90063 1.05889 1.20088 0.90863 1.24827 0.96134 0.97954 1.01355 1.69851 1.07279 1.35571 1.43156 0.86249 0.78704 0.80008 0.81062 1.21711 1.21299 1.21230 1.67414 1.08039 1.30484 1.10592 1.21163 0.89194 0.95285 0.95835 1.20814 0.99179 0.92981 1.03538 0.90490 0.90547 0.91216 0.84232 0.83444 0.75725 0.93372 0.78918 0.94321 0.90691 0.93122 0.89102 0.89248 0.92596 0.93609 0.91616 0.93752 0.89999 0.90144 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.62 36.01 0.35 -0.28 16 2 C -0.12 -1.09 5.91 -104.36 -0.62 -1.71 16 3 C -0.08 -0.76 9.85 -39.30 -0.39 -1.15 16 4 C -0.12 -1.39 9.63 -39.05 -0.38 -1.77 16 5 C 0.08 1.20 6.75 -83.01 -0.56 0.64 16 6 C 0.56 9.30 7.57 -12.18 -0.09 9.21 16 7 O -0.54 -10.11 16.32 5.35 0.09 -10.02 16 8 N -0.70 -11.23 4.37 -61.15 -0.27 -11.49 16 9 C 0.00 0.02 2.68 -4.04 -0.01 0.01 16 10 C -0.09 -1.56 2.76 -90.46 -0.25 -1.81 16 11 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.11 -2.31 5.20 -26.29 -0.14 -2.44 16 13 C 0.18 4.21 3.16 -65.73 -0.21 4.00 16 14 H 0.11 2.92 6.28 -51.93 -0.33 2.59 16 15 C -0.17 -3.47 5.74 -24.93 -0.14 -3.61 16 16 C -0.16 -2.95 5.74 -24.93 -0.14 -3.10 16 17 C 0.15 3.02 4.29 -66.00 -0.28 2.74 16 18 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 19 C -0.12 -2.23 5.35 -26.54 -0.14 -2.38 16 20 N -0.58 -14.28 2.82 -153.06 -0.43 -14.71 16 21 C -0.22 -6.00 10.38 -15.06 -0.16 -6.16 16 22 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 23 C -0.01 -0.16 5.43 -17.43 -0.09 -0.26 16 24 N -0.91 -25.65 10.59 55.49 0.59 -25.06 16 25 Si 0.91 21.79 29.56 -169.99 -5.03 16.76 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 29 N -0.45 -6.17 9.45 -6.06 -0.06 -6.22 16 30 C 0.13 1.37 6.78 -82.61 -0.56 0.81 16 31 C -0.11 -0.86 9.77 36.01 0.35 -0.51 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.34 5.95 -51.93 -0.31 0.03 16 34 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.15 1.67 7.64 -52.49 -0.40 1.27 16 37 H 0.41 6.35 6.64 -40.82 -0.27 6.08 16 38 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 39 H 0.20 3.46 1.12 -165.81 -0.19 3.28 16 40 H 0.04 0.75 6.71 -51.93 -0.35 0.40 16 41 H 0.07 1.81 8.03 -51.93 -0.42 1.40 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.72 3.94 -51.93 -0.20 1.52 16 44 H 0.09 1.52 4.83 -51.93 -0.25 1.27 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -30.85 381.71 -10.45 -41.30 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.63 Total: 11.47 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.46 Total: -7.76 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.17 Total: -57.49 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.85 -10.45 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048545672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.442 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds