Wall clock time and date at job start Wed Apr 1 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38353 * 119.46129 * 2 1 4 4 C 1.38353 * 119.30272 * 179.97438 * 3 2 1 5 5 C 1.40022 * 118.28849 * 359.97438 * 4 3 2 6 6 C 1.47841 * 120.55714 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00119 * 171.89909 * 6 5 4 8 8 N 1.34778 * 119.99936 * 351.89745 * 6 5 4 9 9 C 1.46502 * 119.99931 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47294 * 180.02562 * 9 8 6 11 11 H 1.09010 * 109.43078 * 300.07138 * 10 9 8 12 12 C 1.53142 * 109.43591 * 59.97980 * 10 9 8 13 13 C 1.53697 * 108.87543 * 66.17731 * 12 10 9 14 14 H 1.09003 * 112.10118 * 187.62004 * 13 12 10 15 15 C 1.54606 * 107.83291 * 312.23174 * 13 12 10 16 16 C 1.54318 * 104.75335 * 88.67076 * 15 13 12 17 17 C 1.54608 * 104.74837 * 359.97438 * 16 15 13 18 18 H 1.08998 * 112.19587 * 146.80112 * 17 16 15 19 19 C 1.53147 * 109.43829 * 180.20865 * 10 9 8 20 20 N 1.48297 * 104.26180 * 25.14491 * 17 16 15 21 21 C 1.36932 * 128.21490 * 138.38046 * 20 17 16 22 22 H 1.08004 * 120.00530 * 185.74210 * 21 20 17 23 23 C 1.38814 * 119.99600 * 5.73522 * 21 20 17 24 24 N 1.31619 * 120.00220 * 24.20377 * 23 21 20 25 25 Si 1.86809 * 119.99821 * 204.20011 * 23 21 20 26 26 H 1.48500 * 109.46901 * 95.00171 * 25 23 21 27 27 H 1.48493 * 109.46869 * 214.99888 * 25 23 21 28 28 H 1.48493 * 109.46857 * 335.00338 * 25 23 21 29 29 C 1.39522 * 118.88428 * 0.25165 * 5 4 3 30 30 C 1.50697 * 119.71691 * 179.75003 * 29 5 4 31 31 N 1.31694 * 120.56484 * 359.47848 * 29 5 4 32 32 H 1.08998 * 109.47223 * 90.00405 * 1 2 3 33 33 H 1.08999 * 109.47282 * 210.00313 * 1 2 3 34 34 H 1.09003 * 109.47063 * 329.99714 * 1 2 3 35 35 H 1.07999 * 120.34687 * 359.95800 * 3 2 1 36 36 H 1.08005 * 120.85476 * 180.02562 * 4 3 2 37 37 H 0.96999 * 120.00210 * 0.02562 * 8 6 5 38 38 H 1.09005 * 109.47220 * 300.00108 * 9 8 6 39 39 H 1.08999 * 109.47140 * 60.00106 * 9 8 6 40 40 H 1.09007 * 109.56920 * 185.99662 * 12 10 9 41 41 H 1.08998 * 109.57094 * 306.35750 * 12 10 9 42 42 H 1.08994 * 110.38290 * 207.48662 * 15 13 12 43 43 H 1.09001 * 110.38133 * 329.85216 * 15 13 12 44 44 H 1.09003 * 110.37950 * 241.18443 * 16 15 13 45 45 H 1.08988 * 110.38330 * 118.81168 * 16 15 13 46 46 H 1.08998 * 109.57038 * 53.63993 * 19 10 9 47 47 H 1.08994 * 109.57207 * 174.00528 * 19 10 9 48 48 H 0.96996 * 120.00008 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.47403 * 90.05174 * 30 29 5 50 50 H 1.09000 * 109.47202 * 210.05576 * 30 29 5 51 51 H 1.09004 * 109.47441 * 330.05374 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2311 -0.0340 0.0016 6 6 5.7082 -0.0966 0.0017 7 8 6.2713 -1.1635 0.1509 8 7 6.4304 1.0292 -0.1638 9 6 7.8941 0.9671 -0.1644 10 6 8.4642 2.3722 -0.3681 11 1 8.1157 2.7702 -1.3212 12 6 7.9915 3.2836 0.7681 13 6 8.6151 2.7988 2.0866 14 1 8.2108 3.3269 2.9501 15 6 8.4097 1.2689 2.1732 16 6 9.6438 0.6662 1.4697 17 6 10.4787 1.8886 1.0235 18 1 11.5497 1.6886 1.0526 19 6 9.9942 2.3056 -0.3738 20 7 10.0837 2.9641 1.9652 21 6 10.8851 3.8901 2.5778 22 1 10.4694 4.5603 3.3157 23 6 12.2319 3.9674 2.2504 24 7 12.6506 3.5342 1.0802 25 14 13.4499 4.6862 3.4708 26 1 14.0682 3.5890 4.2576 27 1 14.5079 5.4258 2.7368 28 1 12.7420 5.6150 4.3879 29 6 3.4716 -1.2043 -0.0033 30 6 4.1627 -2.5435 -0.0079 31 7 2.1558 -1.1488 0.0015 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6443 2.1381 -0.0007 36 1 4.1275 2.1264 0.0010 37 1 5.9811 1.8806 -0.2826 38 1 8.2413 0.5693 0.7893 39 1 8.2299 0.3176 -0.9728 40 1 8.3071 4.3080 0.5698 41 1 6.9048 3.2422 0.8413 42 1 8.3725 0.9492 3.2145 43 1 7.4968 0.9785 1.6532 44 1 9.3381 0.0793 0.6035 45 1 10.2139 0.0501 2.1649 46 1 10.3250 1.5719 -1.1088 47 1 10.4014 3.2851 -0.6242 48 1 13.5917 3.5879 0.8516 49 1 4.3279 -2.8707 1.0186 50 1 3.5392 -3.2723 -0.5257 51 1 5.1210 -2.4561 -0.5200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048588911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:25 Heat of formation + Delta-G solvation = 119.087408 kcal Electronic energy + Delta-G solvation = -31267.457171 eV Core-core repulsion = 27364.230460 eV Total energy + Delta-G solvation = -3903.226711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.47077 -40.67818 -38.71364 -35.01236 -33.72149 -33.44062 -32.51808 -31.47390 -30.74720 -29.75770 -29.24215 -27.78491 -26.26962 -23.75601 -23.36237 -23.07572 -22.27315 -20.80138 -20.69981 -19.45900 -18.88837 -17.86650 -17.14063 -16.80336 -15.90469 -15.63502 -15.55435 -15.15821 -14.83375 -14.53875 -14.26058 -13.76653 -13.57339 -13.51547 -13.19475 -13.08960 -12.76548 -12.70390 -12.56901 -12.45189 -12.13671 -12.05071 -11.99158 -11.73679 -11.60679 -11.42798 -11.26251 -10.93138 -10.82754 -10.57849 -10.15328 -10.10893 -10.02203 -9.85877 -9.59809 -9.50532 -9.45289 -9.35582 -9.27320 -9.06504 -8.55425 -8.19205 -6.92518 -5.84124 -3.05167 0.45151 0.94255 2.80150 3.22341 3.38763 3.46608 3.47315 3.59900 3.92206 4.33817 4.45984 4.46912 4.56228 4.75849 5.05362 5.16573 5.17521 5.21763 5.24303 5.31727 5.39368 5.41703 5.52197 5.53816 5.63822 5.69557 5.71704 5.72083 5.77517 5.85331 5.94446 6.00556 6.03760 6.09498 6.14562 6.24074 6.35454 6.37378 6.45916 6.53141 6.57847 6.63198 6.71209 6.81920 6.90432 7.00346 7.04775 7.45566 7.52608 7.57496 7.71368 7.73293 8.16183 8.25729 9.08861 9.74818 10.52120 11.29921 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.002545 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.638725 B =10999.392723 C =11399.319398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.151 3.849 3 C -0.189 4.189 4 C -0.037 4.037 5 C -0.194 4.194 6 C 0.556 3.444 7 O -0.530 6.530 8 N -0.714 5.714 9 C 0.002 3.998 10 C -0.086 4.086 11 H 0.051 0.949 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.065 0.935 15 C -0.162 4.162 16 C -0.171 4.171 17 C 0.178 3.822 18 H 0.108 0.892 19 C -0.111 4.111 20 N -0.584 5.584 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.003 4.003 24 N -0.901 5.901 25 Si 0.897 3.103 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.281 1.281 29 C 0.194 3.806 30 C -0.117 4.117 31 N -0.493 5.493 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.392 0.608 38 H 0.197 0.803 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.253 0.747 49 H 0.083 0.917 50 H 0.067 0.933 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.673 -5.578 -4.383 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.013 3.987 3 C -0.209 4.209 4 C -0.063 4.063 5 C -0.199 4.199 6 C 0.342 3.658 7 O -0.410 6.410 8 N -0.365 5.365 9 C -0.116 4.116 10 C -0.105 4.105 11 H 0.069 0.931 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.084 0.916 15 C -0.201 4.201 16 C -0.209 4.209 17 C 0.071 3.929 18 H 0.126 0.874 19 C -0.150 4.150 20 N -0.304 5.304 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.200 4.200 24 N -0.547 5.547 25 Si 0.728 3.272 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.207 1.207 29 C 0.056 3.944 30 C -0.174 4.174 31 N -0.203 5.203 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.227 0.773 38 H 0.212 0.788 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.444 -6.954 -4.265 22.011 hybrid contribution 0.797 1.978 0.239 2.146 sum -19.647 -4.976 -4.027 20.663 Atomic orbital electron populations 1.20780 0.88550 1.03758 1.03328 1.21523 0.97230 0.88314 0.91640 1.21868 0.94510 0.99492 1.05023 1.21782 0.94712 0.97366 0.92410 1.20862 0.94945 0.94793 1.09337 1.17939 0.85983 0.84389 0.77442 1.90688 1.72203 1.28191 1.49885 1.46318 1.08717 1.09130 1.72319 1.25321 0.76982 0.99409 1.09911 1.21272 0.98133 0.93432 0.97642 0.93071 1.22213 0.97234 0.99605 0.97393 1.21478 0.86838 0.92795 0.94488 0.91639 1.23405 0.98520 0.98227 0.99899 1.23495 0.97085 1.00231 1.00124 1.21524 0.99057 0.85053 0.87302 0.87403 1.22012 0.91384 1.02376 0.99275 1.45261 1.00137 1.33441 1.51604 1.18964 0.89534 1.11763 1.15209 0.90458 1.24651 0.97461 1.01308 0.96611 1.70013 1.14730 1.51858 1.18095 0.86322 0.81442 0.78197 0.81279 1.21685 1.22059 1.20691 1.21528 0.88419 0.95546 0.88935 1.21190 1.01503 0.90640 1.04079 1.67495 1.09156 1.29046 1.14635 0.90060 0.90216 0.90422 0.84247 0.84356 0.77349 0.78790 0.92932 0.91794 0.94214 0.92901 0.88838 0.89281 0.92541 0.93879 0.90417 0.93715 0.89893 0.91449 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.30 16 2 C 0.15 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.19 -1.61 9.72 -39.50 -0.38 -1.99 16 4 C -0.04 -0.35 9.62 -38.87 -0.37 -0.72 16 5 C -0.19 -2.37 5.89 -104.82 -0.62 -2.98 16 6 C 0.56 7.72 7.44 -12.33 -0.09 7.63 16 7 O -0.53 -8.67 13.31 5.32 0.07 -8.60 16 8 N -0.71 -9.18 4.33 -61.25 -0.27 -9.45 16 9 C 0.00 0.03 2.68 -4.04 -0.01 0.02 16 10 C -0.09 -1.40 2.76 -90.47 -0.25 -1.65 16 11 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 12 C -0.12 -2.08 5.27 -26.30 -0.14 -2.22 16 13 C 0.15 2.92 4.32 -65.74 -0.28 2.64 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.16 -2.82 5.72 -25.20 -0.14 -2.97 16 16 C -0.17 -3.17 5.72 -25.20 -0.14 -3.31 16 17 C 0.18 3.89 3.25 -65.76 -0.21 3.68 16 18 H 0.11 2.74 6.29 -51.93 -0.33 2.42 16 19 C -0.11 -2.19 5.37 -26.31 -0.14 -2.33 16 20 N -0.58 -13.72 2.83 -152.80 -0.43 -14.15 16 21 C -0.23 -6.01 10.31 -15.06 -0.16 -6.16 16 22 H 0.08 2.02 7.94 -52.48 -0.42 1.60 16 23 C 0.00 -0.08 5.27 -17.43 -0.09 -0.17 16 24 N -0.90 -24.98 11.08 55.49 0.61 -24.36 16 25 Si 0.90 21.39 29.62 -169.99 -5.03 16.35 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 29 C 0.19 2.46 6.82 -82.17 -0.56 1.90 16 30 C -0.12 -1.40 9.14 36.00 0.33 -1.07 16 31 N -0.49 -5.96 10.17 -5.42 -0.06 -6.02 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 1.00 6.60 -52.48 -0.35 0.66 16 37 H 0.39 4.19 5.49 -40.82 -0.22 3.97 16 38 H 0.20 3.17 1.12 -165.99 -0.19 2.99 16 39 H 0.05 0.83 8.00 -51.93 -0.42 0.42 16 40 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.04 0.54 6.71 -51.93 -0.35 0.19 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.49 3.94 -51.93 -0.20 1.29 16 44 H 0.09 1.52 4.84 -51.93 -0.25 1.27 16 45 H 0.06 1.06 8.14 -51.94 -0.42 0.63 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 48 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.11 1.47 5.42 -51.93 -0.28 1.18 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -30.10 379.27 -10.48 -40.58 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.63 Total: 9.03 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.47 Total: -9.10 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.14 Total: -53.98 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.10 -10.48 -40.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048588911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.670 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds