Wall clock time and date at job start Wed Apr 1 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38353 * 119.46129 * 2 1 4 4 C 1.38353 * 119.30272 * 179.97438 * 3 2 1 5 5 C 1.40022 * 118.28849 * 359.97438 * 4 3 2 6 6 C 1.47841 * 120.55714 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00119 * 171.89909 * 6 5 4 8 8 N 1.34778 * 119.99936 * 351.89745 * 6 5 4 9 9 C 1.46502 * 119.99931 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47294 * 180.02562 * 9 8 6 11 11 H 1.09010 * 109.43078 * 300.07138 * 10 9 8 12 12 C 1.53142 * 109.43591 * 59.97980 * 10 9 8 13 13 C 1.53697 * 108.87543 * 66.17731 * 12 10 9 14 14 H 1.09003 * 112.10118 * 187.62004 * 13 12 10 15 15 C 1.54606 * 107.83291 * 312.23174 * 13 12 10 16 16 C 1.54318 * 104.75335 * 88.67076 * 15 13 12 17 17 C 1.54608 * 104.74837 * 359.97438 * 16 15 13 18 18 H 1.08998 * 112.19587 * 146.80112 * 17 16 15 19 19 C 1.53147 * 109.43829 * 180.20865 * 10 9 8 20 20 N 1.48297 * 104.26180 * 25.14491 * 17 16 15 21 21 C 1.36932 * 128.21490 * 138.38046 * 20 17 16 22 22 H 1.08004 * 120.00530 * 185.74210 * 21 20 17 23 23 C 1.38814 * 119.99600 * 5.73522 * 21 20 17 24 24 N 1.31619 * 120.00220 * 24.20377 * 23 21 20 25 25 Si 1.86809 * 119.99821 * 204.20011 * 23 21 20 26 26 H 1.48500 * 109.46901 * 95.00171 * 25 23 21 27 27 H 1.48493 * 109.46869 * 214.99888 * 25 23 21 28 28 H 1.48493 * 109.46857 * 335.00338 * 25 23 21 29 29 C 1.39522 * 118.88428 * 0.25165 * 5 4 3 30 30 C 1.50697 * 119.71691 * 179.75003 * 29 5 4 31 31 N 1.31694 * 120.56484 * 359.47848 * 29 5 4 32 32 H 1.08998 * 109.47223 * 90.00405 * 1 2 3 33 33 H 1.08999 * 109.47282 * 210.00313 * 1 2 3 34 34 H 1.09003 * 109.47063 * 329.99714 * 1 2 3 35 35 H 1.07999 * 120.34687 * 359.95800 * 3 2 1 36 36 H 1.08005 * 120.85476 * 180.02562 * 4 3 2 37 37 H 0.96999 * 120.00210 * 0.02562 * 8 6 5 38 38 H 1.09005 * 109.47220 * 300.00108 * 9 8 6 39 39 H 1.08999 * 109.47140 * 60.00106 * 9 8 6 40 40 H 1.09007 * 109.56920 * 185.99662 * 12 10 9 41 41 H 1.08998 * 109.57094 * 306.35750 * 12 10 9 42 42 H 1.08994 * 110.38290 * 207.48662 * 15 13 12 43 43 H 1.09001 * 110.38133 * 329.85216 * 15 13 12 44 44 H 1.09003 * 110.37950 * 241.18443 * 16 15 13 45 45 H 1.08988 * 110.38330 * 118.81168 * 16 15 13 46 46 H 1.08998 * 109.57038 * 53.63993 * 19 10 9 47 47 H 1.08994 * 109.57207 * 174.00528 * 19 10 9 48 48 H 0.96996 * 120.00008 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.47403 * 90.05174 * 30 29 5 50 50 H 1.09000 * 109.47202 * 210.05576 * 30 29 5 51 51 H 1.09004 * 109.47441 * 330.05374 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2311 -0.0340 0.0016 6 6 5.7082 -0.0966 0.0017 7 8 6.2713 -1.1635 0.1509 8 7 6.4304 1.0292 -0.1638 9 6 7.8941 0.9671 -0.1644 10 6 8.4642 2.3722 -0.3681 11 1 8.1157 2.7702 -1.3212 12 6 7.9915 3.2836 0.7681 13 6 8.6151 2.7988 2.0866 14 1 8.2108 3.3269 2.9501 15 6 8.4097 1.2689 2.1732 16 6 9.6438 0.6662 1.4697 17 6 10.4787 1.8886 1.0235 18 1 11.5497 1.6886 1.0526 19 6 9.9942 2.3056 -0.3738 20 7 10.0837 2.9641 1.9652 21 6 10.8851 3.8901 2.5778 22 1 10.4694 4.5603 3.3157 23 6 12.2319 3.9674 2.2504 24 7 12.6506 3.5342 1.0802 25 14 13.4499 4.6862 3.4708 26 1 14.0682 3.5890 4.2576 27 1 14.5079 5.4258 2.7368 28 1 12.7420 5.6150 4.3879 29 6 3.4716 -1.2043 -0.0033 30 6 4.1627 -2.5435 -0.0079 31 7 2.1558 -1.1488 0.0015 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6443 2.1381 -0.0007 36 1 4.1275 2.1264 0.0010 37 1 5.9811 1.8806 -0.2826 38 1 8.2413 0.5693 0.7893 39 1 8.2299 0.3176 -0.9728 40 1 8.3071 4.3080 0.5698 41 1 6.9048 3.2422 0.8413 42 1 8.3725 0.9492 3.2145 43 1 7.4968 0.9785 1.6532 44 1 9.3381 0.0793 0.6035 45 1 10.2139 0.0501 2.1649 46 1 10.3250 1.5719 -1.1088 47 1 10.4014 3.2851 -0.6242 48 1 13.5917 3.5879 0.8516 49 1 4.3279 -2.8707 1.0186 50 1 3.5392 -3.2723 -0.5257 51 1 5.1210 -2.4561 -0.5200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048588911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:23 Heat of formation + Delta-G solvation = 102.063462 kcal Electronic energy + Delta-G solvation = -31268.195385 eV Core-core repulsion = 27364.230460 eV Total energy + Delta-G solvation = -3903.964925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.80747 -41.60124 -39.78528 -36.34892 -34.80086 -34.47942 -33.75731 -32.88496 -32.32921 -31.39348 -29.94935 -28.91074 -27.58956 -25.37747 -24.83921 -23.88618 -23.18902 -22.15041 -21.85147 -20.96388 -20.46922 -18.98250 -18.55359 -17.90322 -17.29947 -16.64214 -16.54326 -16.34570 -16.08049 -15.86054 -15.51253 -14.97321 -14.62849 -14.51428 -14.34344 -14.26746 -14.17016 -13.93546 -13.67519 -13.49586 -13.19199 -13.15383 -13.09378 -13.02227 -12.85771 -12.81014 -12.77918 -12.68386 -12.53003 -12.31782 -11.98749 -11.36705 -11.20551 -11.04160 -10.95236 -10.89393 -10.86107 -10.81231 -10.46329 -10.32620 -9.86796 -9.42910 -8.81338 -7.87078 -5.06830 -0.34462 0.21585 1.45989 1.49965 1.56342 1.85590 2.17417 2.52614 2.77664 3.21260 3.28787 3.59569 3.66055 3.71687 3.77407 3.94674 3.96652 4.00854 4.07965 4.25610 4.28752 4.38183 4.39197 4.54625 4.59443 4.61417 4.67281 4.72422 4.76016 4.79044 4.79823 4.83819 4.90316 4.99476 5.01289 5.03771 5.10777 5.11593 5.18251 5.19562 5.26970 5.34676 5.38600 5.50543 5.57177 5.58112 5.59147 5.70117 5.80178 5.87200 6.25103 6.56035 6.94018 7.09815 7.23931 7.79973 8.59580 9.25869 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.002545 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.638725 B =10999.392723 C =11399.319398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.141 3.859 3 C -0.181 4.181 4 C -0.034 4.034 5 C -0.212 4.212 6 C 0.557 3.443 7 O -0.560 6.560 8 N -0.704 5.704 9 C 0.015 3.985 10 C -0.075 4.075 11 H 0.072 0.928 12 C -0.116 4.116 13 C 0.143 3.857 14 H 0.067 0.933 15 C -0.149 4.149 16 C -0.163 4.163 17 C 0.171 3.829 18 H 0.064 0.936 19 C -0.103 4.103 20 N -0.606 5.606 21 C -0.231 4.231 22 H 0.076 0.924 23 C -0.056 4.056 24 N -0.926 5.926 25 Si 0.955 3.045 26 H -0.295 1.295 27 H -0.300 1.300 28 H -0.271 1.271 29 C 0.174 3.826 30 C -0.112 4.112 31 N -0.516 5.516 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.406 0.594 38 H 0.184 0.816 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.038 0.962 48 H 0.246 0.754 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.177 -4.687 -4.437 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.003 3.997 3 C -0.201 4.201 4 C -0.060 4.060 5 C -0.217 4.217 6 C 0.345 3.655 7 O -0.441 6.441 8 N -0.356 5.356 9 C -0.105 4.105 10 C -0.093 4.093 11 H 0.090 0.910 12 C -0.155 4.155 13 C 0.036 3.964 14 H 0.085 0.915 15 C -0.187 4.187 16 C -0.201 4.201 17 C 0.064 3.936 18 H 0.082 0.918 19 C -0.143 4.143 20 N -0.327 5.327 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.250 4.250 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.223 1.223 27 H -0.227 1.227 28 H -0.196 1.196 29 C 0.036 3.964 30 C -0.169 4.169 31 N -0.227 5.227 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.194 0.806 36 H 0.183 0.817 37 H 0.243 0.757 38 H 0.200 0.800 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.998 -6.049 -4.313 25.121 hybrid contribution 1.769 1.702 0.248 2.467 sum -22.228 -4.347 -4.065 23.011 Atomic orbital electron populations 1.20892 0.86232 1.04748 1.04355 1.22193 0.98883 0.88211 0.90380 1.22284 0.94221 1.00484 1.03062 1.22122 0.95465 0.97205 0.91185 1.20733 0.93676 0.95906 1.11376 1.18209 0.86786 0.83915 0.76593 1.90687 1.72968 1.29344 1.51149 1.46065 1.07533 1.09751 1.72262 1.24879 0.78447 0.98120 1.09042 1.21124 0.95255 0.94317 0.98642 0.90993 1.22096 0.99609 0.98175 0.95667 1.21754 0.84546 0.94093 0.95993 0.91464 1.23336 0.98689 0.96589 1.00090 1.23454 0.97044 0.98781 1.00789 1.21435 0.97370 0.86277 0.88519 0.91774 1.21817 0.94211 1.00215 0.98087 1.45449 1.02200 1.33206 1.51894 1.19234 0.90248 1.11716 1.14819 0.90588 1.25292 0.98913 1.02925 0.97906 1.70163 1.14202 1.53692 1.19340 0.85407 0.79372 0.77370 0.79388 1.22261 1.22690 1.19609 1.21587 0.89031 0.95796 0.90029 1.21072 1.00916 0.91271 1.03651 1.67509 1.08891 1.30678 1.15653 0.88851 0.90818 0.87874 0.80588 0.81674 0.75680 0.80030 0.93248 0.93895 0.89867 0.92875 0.86618 0.87432 0.93357 0.93037 0.94339 0.94528 0.90354 0.90804 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.16 71.24 0.72 -0.22 16 2 C 0.14 2.29 6.78 42.57 0.29 2.58 16 3 C -0.18 -2.27 9.72 22.32 0.22 -2.06 16 4 C -0.03 -0.51 9.62 22.73 0.22 -0.29 16 5 C -0.21 -4.67 5.89 -19.99 -0.12 -4.78 16 6 C 0.56 14.24 7.44 86.78 0.65 14.89 16 7 O -0.56 -17.76 13.31 -3.87 -0.05 -17.81 16 8 N -0.70 -15.74 4.33 -465.98 -2.02 -17.75 16 9 C 0.01 0.41 2.68 86.38 0.23 0.64 16 10 C -0.07 -2.27 2.76 -10.70 -0.03 -2.30 16 11 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 12 C -0.12 -3.58 5.27 30.88 0.16 -3.42 16 13 C 0.14 5.29 4.32 45.43 0.20 5.48 16 14 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.15 -4.92 5.72 31.59 0.18 -4.74 16 16 C -0.16 -5.97 5.72 31.59 0.18 -5.79 16 17 C 0.17 7.67 3.25 45.41 0.15 7.82 16 18 H 0.06 3.44 6.29 -2.39 -0.02 3.43 16 19 C -0.10 -4.13 5.37 30.86 0.17 -3.96 16 20 N -0.61 -28.83 2.83 -637.33 -1.80 -30.63 16 21 C -0.23 -12.46 10.31 84.03 0.87 -11.60 16 22 H 0.08 4.00 7.94 -2.91 -0.02 3.98 16 23 C -0.06 -3.08 5.27 84.86 0.45 -2.63 16 24 N -0.93 -53.55 11.08 21.65 0.24 -53.31 16 25 Si 0.95 45.14 29.62 68.60 2.03 47.17 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 C 0.17 4.20 6.82 42.89 0.29 4.50 16 30 C -0.11 -2.68 9.14 71.23 0.65 -2.03 16 31 N -0.52 -11.65 10.17 -171.06 -1.74 -13.39 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 35 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.17 1.49 6.60 -2.91 -0.02 1.47 16 37 H 0.41 6.77 5.49 -92.71 -0.51 6.26 16 38 H 0.18 5.56 1.12 -109.53 -0.12 5.44 16 39 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 40 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.08 1.86 6.71 -2.39 -0.02 1.84 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.12 3.34 3.94 -2.39 -0.01 3.33 16 44 H 0.11 3.56 4.84 -2.39 -0.01 3.55 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.10 2.58 5.42 -2.39 -0.01 2.56 16 Total: -1.00 -68.96 379.27 2.47 -66.50 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.34 Total: 27.14 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.47 Total: -7.92 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -5.32 Total: -115.08 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.05 Total: -17.81 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.96 2.47 -66.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048588911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.560 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds