Wall clock time and date at job start Wed Apr 1 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38671 * 120.78691 * 2 1 4 4 C 1.38180 * 119.16015 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.76726 * 359.97438 * 4 3 2 6 6 C 1.31855 * 121.72572 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.61819 * 179.97438 * 6 5 4 8 8 C 1.53009 * 109.46709 * 105.00518 * 7 6 5 9 9 C 1.52998 * 109.47395 * 225.00168 * 7 6 5 10 10 C 1.50700 * 109.47359 * 345.00557 * 7 6 5 11 11 O 1.21279 * 120.00084 * 117.67816 * 10 7 6 12 12 N 1.34777 * 119.99927 * 297.67928 * 10 7 6 13 13 C 1.46662 * 125.33741 * 185.22415 * 12 10 7 14 14 C 1.53730 * 107.94202 * 180.54516 * 13 12 10 15 15 H 1.09000 * 112.56561 * 139.72129 * 14 13 12 16 16 C 1.53692 * 109.33857 * 266.25269 * 14 13 12 17 17 N 1.47178 * 107.73126 * 128.69802 * 16 14 13 18 18 C 1.36933 * 125.24959 * 180.40102 * 17 16 14 19 19 H 1.08005 * 119.99640 * 179.13191 * 18 17 16 20 20 C 1.38812 * 120.00901 * 359.13113 * 18 17 16 21 21 N 1.31623 * 119.99023 * 0.02562 * 20 18 17 22 22 Si 1.86788 * 120.00568 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47408 * 60.00041 * 22 20 18 24 24 H 1.48503 * 109.47244 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47367 * 300.00094 * 22 20 18 26 26 C 1.46743 * 109.41069 * 359.64639 * 17 16 14 27 27 C 1.53920 * 106.72180 * 342.41099 * 26 17 16 28 28 H 1.09000 * 113.01323 * 150.83582 * 27 26 17 29 29 C 1.46779 * 125.33498 * 4.91561 * 12 10 7 30 30 C 1.38226 * 120.76038 * 0.27679 * 6 5 4 31 31 H 1.08999 * 109.47356 * 90.00343 * 1 2 3 32 32 H 1.09006 * 109.46536 * 210.00075 * 1 2 3 33 33 H 1.08999 * 109.46750 * 329.99480 * 1 2 3 34 34 H 1.07999 * 120.42107 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.61821 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.46812 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.47368 * 59.99912 * 8 7 6 38 38 H 1.09007 * 109.46532 * 299.99586 * 8 7 6 39 39 H 1.09008 * 109.47241 * 292.56077 * 9 7 6 40 40 H 1.09003 * 109.47083 * 52.55565 * 9 7 6 41 41 H 1.08996 * 109.47100 * 172.56357 * 9 7 6 42 42 H 1.08992 * 109.77430 * 300.16240 * 13 12 10 43 43 H 1.09004 * 109.77452 * 60.92598 * 13 12 10 44 44 H 1.09000 * 109.75992 * 247.19358 * 16 14 13 45 45 H 1.08993 * 109.76273 * 7.91297 * 16 14 13 46 46 H 0.97010 * 119.99580 * 180.02562 * 21 20 18 47 47 H 1.09006 * 110.00670 * 223.09123 * 26 17 16 48 48 H 1.09001 * 110.00421 * 101.72879 * 26 17 16 49 49 H 1.08996 * 110.03131 * 280.77779 * 29 12 10 50 50 H 1.09000 * 110.02653 * 42.19925 * 29 12 10 51 51 H 1.08006 * 120.41606 * 179.70414 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0016 6 6 3.5984 -1.1516 0.0016 7 6 4.3801 -2.4400 0.0022 8 6 4.3248 -3.0693 1.3958 9 6 3.7731 -3.4054 -1.0178 10 6 5.8142 -2.1576 -0.3649 11 8 6.7009 -2.3937 0.4281 12 7 6.1113 -1.6428 -1.5745 13 6 7.4653 -1.4244 -2.0942 14 6 7.3404 -0.8106 -3.4981 15 1 8.0756 -0.0264 -3.6786 16 6 7.3852 -1.9310 -4.5492 17 7 6.2253 -1.7579 -5.4385 18 6 5.9142 -2.5674 -6.4982 19 1 5.0314 -2.3694 -7.0881 20 6 6.7333 -3.6425 -6.8146 21 7 7.8089 -3.8841 -6.0954 22 14 6.3092 -4.7462 -8.2605 23 1 6.2790 -3.9395 -9.5070 24 1 7.3348 -5.8128 -8.3867 25 1 4.9771 -5.3636 -8.0381 26 6 5.4453 -0.5942 -5.0017 27 6 5.8779 -0.2882 -3.5567 28 1 5.7873 0.7671 -3.2992 29 6 5.1305 -1.2186 -2.5808 30 6 2.2167 -1.1908 -0.0052 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3632 -0.8901 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6967 2.1378 -0.0004 35 1 4.1583 2.0755 0.0001 36 1 4.8906 -4.0010 1.3963 37 1 3.2876 -3.2735 1.6613 38 1 4.7573 -2.3815 2.1224 39 1 2.7827 -3.7130 -0.6822 40 1 3.6910 -2.9083 -1.9844 41 1 4.4130 -4.2825 -1.1134 42 1 8.0056 -0.7407 -1.4397 43 1 7.9954 -2.3750 -2.1532 44 1 8.2985 -1.8473 -5.1383 45 1 7.3533 -2.9018 -4.0547 46 1 8.3816 -4.6352 -6.3166 47 1 4.3807 -0.8266 -5.0311 48 1 5.6588 0.2602 -5.6440 49 1 4.7417 -2.0870 -3.1125 50 1 4.3145 -0.6775 -2.1018 51 1 1.6966 -2.1374 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048887579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:47 Heat of formation + Delta-G solvation = 32.778181 kcal Electronic energy + Delta-G solvation = -32041.233942 eV Core-core repulsion = 28134.264583 eV Total energy + Delta-G solvation = -3906.969360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.17359 -39.70601 -38.25517 -35.39882 -34.81642 -34.01687 -32.17354 -30.40780 -30.18707 -29.33381 -28.10107 -27.24872 -25.78368 -25.38834 -24.45735 -23.11238 -22.44702 -21.08408 -20.03560 -19.21920 -18.61923 -17.23927 -16.75314 -16.69776 -16.19944 -15.66339 -15.39155 -14.91160 -14.66448 -14.47725 -14.36082 -13.93862 -13.69219 -13.49384 -13.27530 -12.96686 -12.88469 -12.81702 -12.58426 -12.38183 -12.29894 -12.12667 -12.00874 -11.90700 -11.67077 -11.47026 -11.37814 -11.17929 -11.02153 -10.87173 -10.77428 -10.32423 -10.09688 -10.02821 -9.82849 -9.69698 -9.61646 -9.56146 -9.27425 -9.07369 -8.59140 -8.08276 -6.82709 -5.71357 -3.05177 0.94520 1.10312 2.99806 3.39134 3.39792 3.44310 3.45897 3.60730 4.01691 4.36523 4.49539 4.50835 4.67699 4.86948 4.87377 4.93298 4.96859 5.00349 5.14094 5.22938 5.23486 5.34888 5.35920 5.51598 5.52199 5.58834 5.63253 5.66235 5.69362 5.73959 5.75431 5.80434 5.85186 5.93360 5.99063 6.06452 6.07408 6.16643 6.21062 6.28145 6.37917 6.47747 6.54726 6.60309 6.64413 6.79365 6.87448 7.57130 7.61431 7.82799 7.88574 7.99821 8.26530 8.56780 9.21845 9.82844 10.47317 11.39911 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.003600 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.109596 B = 7776.523152 C = 8182.806161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.041 4.041 3 C -0.179 4.179 4 C 0.108 3.892 5 N -0.474 5.474 6 C 0.150 3.850 7 C -0.031 4.031 8 C -0.120 4.120 9 C -0.149 4.149 10 C 0.558 3.442 11 O -0.549 6.549 12 N -0.592 5.592 13 C 0.123 3.877 14 C -0.123 4.123 15 H 0.089 0.911 16 C 0.186 3.814 17 N -0.602 5.602 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.147 3.853 27 C -0.108 4.108 28 H 0.085 0.915 29 C 0.115 3.885 30 C -0.165 4.165 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.050 0.950 46 H 0.253 0.747 47 H 0.033 0.967 48 H 0.020 0.980 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 8.573 13.784 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.199 4.199 4 C -0.049 4.049 5 N -0.183 5.183 6 C 0.012 3.988 7 C -0.035 4.035 8 C -0.178 4.178 9 C -0.207 4.207 10 C 0.345 3.655 11 O -0.428 6.428 12 N -0.323 5.323 13 C 0.000 4.000 14 C -0.142 4.142 15 H 0.107 0.893 16 C 0.062 3.938 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.021 3.979 27 C -0.128 4.128 28 H 0.103 0.897 29 C -0.008 4.008 30 C -0.185 4.185 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.172 0.828 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.093 0.907 50 H 0.081 0.919 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.257 8.221 14.165 20.456 hybrid contribution -1.116 -0.429 -0.883 1.486 sum -13.372 7.791 13.282 20.395 Atomic orbital electron populations 1.20828 0.90215 1.03197 1.03029 1.20294 0.96718 0.92850 0.94993 1.22022 0.95657 0.98599 1.03630 1.22729 0.91675 0.95971 0.94519 1.67584 1.41063 0.97898 1.11718 1.20788 0.90754 0.92751 0.94459 1.19761 0.92537 0.92264 0.98906 1.21647 1.01648 1.01457 0.93092 1.22096 1.01097 0.98925 0.98583 1.19432 0.89645 0.76311 0.80100 1.90646 1.49050 1.54010 1.49059 1.47920 1.07930 1.61463 1.14975 1.21772 0.83688 1.00575 0.93919 1.23139 0.96204 0.99693 0.95194 0.89321 1.21198 0.90993 0.92992 0.88625 1.44339 1.26281 1.29542 1.32752 1.18977 1.07291 1.05483 1.04172 0.90545 1.24784 0.97297 0.98832 0.99286 1.69956 1.15390 1.30912 1.40456 0.86218 0.77260 0.80228 0.82142 1.21191 1.21605 1.21232 1.21125 0.95058 0.91049 0.90700 1.22891 0.95697 0.98075 0.96156 0.89694 1.22200 0.91711 0.97943 0.88922 1.21763 0.94412 0.98973 1.03367 0.90347 0.91045 0.91097 0.84935 0.82775 0.90951 0.92014 0.91726 0.91254 0.90689 0.90903 0.92427 0.91175 0.93616 0.93198 0.93670 0.94862 0.96276 0.90743 0.91923 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.06 36.01 0.36 -0.34 16 2 C -0.04 -0.37 5.92 -104.32 -0.62 -0.99 16 3 C -0.18 -1.62 9.82 -39.44 -0.39 -2.01 16 4 C 0.11 1.19 11.18 -17.55 -0.20 1.00 16 5 N -0.47 -6.63 7.70 -9.47 -0.07 -6.71 16 6 C 0.15 1.96 3.74 -82.59 -0.31 1.65 16 7 C -0.03 -0.43 0.61 -156.81 -0.10 -0.53 16 8 C -0.12 -1.51 7.70 37.16 0.29 -1.22 16 9 C -0.15 -1.90 7.62 37.16 0.28 -1.62 16 10 C 0.56 10.08 5.83 -10.98 -0.06 10.01 16 11 O -0.55 -11.56 16.30 5.56 0.09 -11.47 16 12 N -0.59 -10.67 3.17 -172.17 -0.55 -11.22 16 13 C 0.12 2.29 6.24 -3.57 -0.02 2.27 16 14 C -0.12 -2.31 4.01 -88.60 -0.36 -2.66 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.19 4.45 4.77 -3.31 -0.02 4.43 16 17 N -0.60 -14.96 3.39 -171.51 -0.58 -15.54 16 18 C -0.23 -6.30 10.25 -15.06 -0.15 -6.45 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 21 N -0.92 -26.74 10.25 55.49 0.57 -26.18 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.15 2.95 6.41 -3.43 -0.02 2.93 16 27 C -0.11 -1.88 4.14 -88.25 -0.37 -2.24 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 C 0.12 1.96 4.29 -3.28 -0.01 1.94 16 30 C -0.17 -1.72 8.80 -39.44 -0.35 -2.07 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.38 8.10 -51.93 -0.42 -0.05 16 33 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.07 0.67 7.03 -51.92 -0.36 0.30 16 40 H 0.07 1.05 5.07 -51.93 -0.26 0.78 16 41 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.42 7.44 -51.93 -0.39 1.03 16 44 H 0.05 1.22 7.40 -51.93 -0.38 0.84 16 45 H 0.05 1.34 6.58 -51.93 -0.34 1.00 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.03 0.65 7.97 -51.93 -0.41 0.23 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 1.41 6.20 -51.93 -0.32 1.09 16 50 H 0.06 0.98 4.96 -51.93 -0.26 0.73 16 51 H 0.14 1.15 6.88 -52.48 -0.36 0.78 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -33.15 389.66 -9.95 -43.10 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.13 Total: 1.42 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.13 Total: 3.86 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.63 Total: -59.64 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.15 -9.95 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048887579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.874 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds