Wall clock time and date at job start Wed Apr 1 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38349 * 119.46338 * 2 1 4 4 C 1.38359 * 119.30345 * 180.02562 * 3 2 1 5 5 C 1.40020 * 118.28718 * 359.97438 * 4 3 2 6 6 C 1.47838 * 120.55788 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99790 * 131.64196 * 6 5 4 8 8 N 1.34769 * 120.00607 * 311.64512 * 6 5 4 9 9 C 1.46654 * 125.34203 * 174.95806 * 8 6 5 10 10 C 1.53667 * 107.97649 * 179.29354 * 9 8 6 11 11 H 1.08999 * 113.32476 * 106.33277 * 10 9 8 12 12 C 1.53985 * 109.29730 * 233.06568 * 10 9 8 13 13 N 1.46756 * 106.68148 * 82.33915 * 12 10 9 14 14 C 1.36934 * 125.33656 * 198.42996 * 13 12 10 15 15 H 1.07995 * 119.99963 * 180.02562 * 14 13 12 16 16 C 1.38810 * 120.00026 * 0.02562 * 14 13 12 17 17 N 1.31618 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00269 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46711 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47312 * 119.99780 * 18 16 14 21 21 H 1.48500 * 109.46975 * 240.00105 * 18 16 14 22 22 C 1.46658 * 109.32536 * 18.45103 * 13 12 10 23 23 C 1.53669 * 107.97656 * 359.29249 * 22 13 12 24 24 H 1.09000 * 112.77736 * 106.01192 * 23 22 13 25 25 C 1.46768 * 125.33110 * 354.96109 * 8 6 5 26 26 C 1.39524 * 118.88322 * 0.25456 * 5 4 3 27 27 C 1.50700 * 119.71821 * 179.74629 * 26 5 4 28 28 C 1.52999 * 109.47182 * 124.11272 * 27 26 5 29 29 C 1.53005 * 109.47102 * 244.11845 * 27 26 5 30 30 N 1.31697 * 120.56541 * 359.49501 * 26 5 4 31 31 H 1.08992 * 109.47520 * 89.99468 * 1 2 3 32 32 H 1.08998 * 109.47497 * 209.99999 * 1 2 3 33 33 H 1.09002 * 109.46848 * 329.99661 * 1 2 3 34 34 H 1.08003 * 120.34769 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.85587 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.76461 * 59.65861 * 9 8 6 37 37 H 1.09003 * 109.76836 * 298.92748 * 9 8 6 38 38 H 1.08998 * 110.01511 * 323.03030 * 12 10 9 39 39 H 1.09004 * 110.01995 * 201.64791 * 12 10 9 40 40 H 0.97001 * 120.00503 * 180.02562 * 17 16 14 41 41 H 1.09008 * 109.76575 * 239.66001 * 22 13 12 42 42 H 1.09000 * 109.76832 * 118.92450 * 22 13 12 43 43 H 1.09002 * 110.01365 * 79.14318 * 25 8 6 44 44 H 1.09000 * 110.01590 * 317.75607 * 25 8 6 45 45 H 1.09008 * 109.46699 * 4.11280 * 27 26 5 46 46 H 1.09000 * 109.46868 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.47234 * 299.99961 * 28 27 26 48 48 H 1.09003 * 109.46837 * 60.00400 * 28 27 26 49 49 H 1.08992 * 109.46944 * 60.00005 * 29 27 26 50 50 H 1.09002 * 109.46968 * 180.02562 * 29 27 26 51 51 H 1.08998 * 109.46335 * 299.99347 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0005 5 6 4.2312 -0.0341 -0.0005 6 6 5.7082 -0.0968 -0.0016 7 8 6.2864 -0.8211 0.7849 8 7 6.4138 0.6490 -0.8746 9 6 7.8759 0.7578 -0.9096 10 6 8.2542 1.6938 -2.0682 11 1 8.5912 2.6760 -1.7370 12 6 9.2757 0.9884 -2.9794 13 7 8.5079 0.1212 -3.8807 14 6 9.0188 -0.9302 -4.5938 15 1 8.3731 -1.5128 -5.2341 16 6 10.3665 -1.2471 -4.4938 17 7 11.1533 -0.5374 -3.7131 18 14 11.0636 -2.6810 -5.4672 19 1 9.9801 -3.3127 -6.2624 20 1 12.1263 -2.1892 -6.3804 21 1 11.6382 -3.6812 -4.5321 22 6 7.1078 0.5576 -3.8982 23 6 6.9724 1.7553 -2.9450 24 1 6.8618 2.7033 -3.4715 25 6 5.8393 1.4798 -1.9394 26 6 3.4715 -1.2044 -0.0054 27 6 4.1625 -2.5436 -0.0112 28 6 3.6777 -3.3729 1.1796 29 6 3.8365 -3.2800 -1.3122 30 7 2.1557 -1.1488 0.0001 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6444 2.1381 -0.0004 35 1 4.1276 2.1263 -0.0010 36 1 8.3150 -0.2265 -1.0723 37 1 8.2374 1.1717 0.0318 38 1 9.9603 0.3895 -2.3788 39 1 9.8329 1.7263 -3.5565 40 1 12.0951 -0.7586 -3.6434 41 1 6.4641 -0.2555 -3.5623 42 1 6.8275 0.8567 -4.9081 43 1 5.4730 2.4185 -1.5236 44 1 5.0257 0.9464 -2.4310 45 1 5.2401 -2.3967 0.0629 46 1 4.1779 -4.3414 1.1756 47 1 3.9100 -2.8483 2.1064 48 1 2.6001 -3.5198 1.1054 49 1 4.1820 -2.6892 -2.1604 50 1 4.3360 -4.2489 -1.3162 51 1 2.7590 -3.4269 -1.3862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048965351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:16 Heat of formation + Delta-G solvation = 23.746105 kcal Electronic energy + Delta-G solvation = -31408.876831 eV Core-core repulsion = 27501.515811 eV Total energy + Delta-G solvation = -3907.361020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07661 -39.80608 -38.08913 -35.72194 -34.93482 -33.29091 -32.14277 -31.52452 -30.23439 -29.70117 -28.22179 -27.04201 -25.66879 -25.52914 -24.11453 -23.46065 -22.31623 -20.49110 -20.10917 -19.68084 -19.42388 -17.46818 -16.88523 -16.56369 -16.00836 -15.82001 -15.60432 -14.77883 -14.75284 -14.56745 -14.14836 -13.99064 -13.72132 -13.45543 -13.32281 -13.14919 -12.96770 -12.74959 -12.65452 -12.44720 -12.35803 -12.11868 -11.99601 -11.96881 -11.65582 -11.39549 -11.33261 -11.09259 -10.99825 -10.84722 -10.71551 -10.47084 -10.11138 -10.04306 -10.00903 -9.91069 -9.85361 -9.63883 -9.43054 -8.94739 -8.66089 -8.36041 -6.85939 -5.70903 -3.09310 0.65881 1.05352 2.74142 3.11654 3.39230 3.45082 3.47280 3.58647 3.96290 4.38309 4.44224 4.47088 4.54794 4.73479 4.82344 4.99126 5.10496 5.11373 5.19860 5.24394 5.25909 5.31663 5.34497 5.42773 5.48797 5.59034 5.65307 5.69340 5.71100 5.75739 5.76186 5.80793 5.82562 5.89976 5.93413 6.04363 6.09886 6.13006 6.27146 6.32128 6.34993 6.36865 6.53151 6.56367 6.62746 6.70346 6.78654 7.41078 7.60035 7.65817 7.79347 7.82372 8.24645 8.29611 9.20066 9.80457 10.43036 11.35852 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.003358 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.073366 B = 8336.044508 C = 9167.312019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.144 3.856 3 C -0.185 4.185 4 C -0.039 4.039 5 C -0.178 4.178 6 C 0.577 3.423 7 O -0.529 6.529 8 N -0.599 5.599 9 C 0.122 3.878 10 C -0.123 4.123 11 H 0.089 0.911 12 C 0.170 3.830 13 N -0.599 5.599 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.145 3.855 23 C -0.109 4.109 24 H 0.098 0.902 25 C 0.111 3.889 26 C 0.196 3.804 27 C -0.064 4.064 28 C -0.131 4.131 29 C -0.138 4.138 30 N -0.480 5.480 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.020 0.980 40 H 0.252 0.748 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.260 5.866 7.821 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.205 4.205 4 C -0.065 4.065 5 C -0.183 4.183 6 C 0.364 3.636 7 O -0.407 6.407 8 N -0.331 5.331 9 C 0.000 4.000 10 C -0.143 4.143 11 H 0.107 0.893 12 C 0.044 3.956 13 N -0.325 5.325 14 C -0.352 4.352 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.018 3.982 23 C -0.129 4.129 24 H 0.116 0.884 25 C -0.012 4.012 26 C 0.057 3.943 27 C -0.083 4.083 28 C -0.189 4.189 29 C -0.196 4.196 30 N -0.189 5.189 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.263 4.545 8.252 21.444 hybrid contribution 0.874 0.380 -0.633 1.144 sum -18.389 4.925 7.619 20.505 Atomic orbital electron populations 1.20746 0.88629 1.03552 1.03266 1.21465 0.97129 0.88276 0.92538 1.21838 0.94368 0.99426 1.04854 1.21712 0.94482 0.97203 0.93075 1.20751 0.94475 0.95021 1.08045 1.17628 0.85881 0.79467 0.80587 1.90771 1.71153 1.38727 1.40027 1.48164 1.08148 1.45467 1.31313 1.21915 0.78495 1.01546 0.98038 1.23213 0.97376 0.98568 0.95167 0.89305 1.21479 0.91037 0.92342 0.90698 1.44199 1.02594 1.34219 1.51529 1.19081 0.92457 1.04614 1.19092 0.90467 1.24773 0.96088 0.99473 1.00077 1.69855 1.04784 1.40908 1.41450 0.86021 0.78824 0.81709 0.79084 1.20537 1.21742 1.21673 1.21127 0.88692 0.92772 0.95563 1.22849 0.94066 0.99983 0.95980 0.88384 1.22053 0.96829 0.94070 0.88284 1.21295 0.88557 0.94524 0.89887 1.20462 1.01256 0.89643 0.96965 1.21668 1.01403 0.99124 0.96681 1.21768 1.01946 1.00107 0.95791 1.67348 1.08881 1.28855 1.13831 0.90137 0.90322 0.90616 0.84370 0.84313 0.89865 0.92207 0.88445 0.96223 0.93719 0.96029 0.96029 0.92023 0.91126 0.87513 0.92186 0.92897 0.92004 0.92823 0.91863 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.16 36.01 0.37 -0.36 16 2 C 0.14 1.52 6.78 -82.51 -0.56 0.96 16 3 C -0.19 -1.75 9.72 -39.50 -0.38 -2.13 16 4 C -0.04 -0.43 8.71 -38.87 -0.34 -0.77 16 5 C -0.18 -2.56 5.15 -104.82 -0.54 -3.10 16 6 C 0.58 9.84 6.69 -12.34 -0.08 9.75 16 7 O -0.53 -10.66 15.26 5.32 0.08 -10.57 16 8 N -0.60 -9.74 3.31 -173.45 -0.57 -10.32 16 9 C 0.12 2.19 6.24 -3.61 -0.02 2.16 16 10 C -0.12 -2.14 4.09 -88.48 -0.36 -2.50 16 11 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 12 C 0.17 3.91 4.84 -3.39 -0.02 3.89 16 13 N -0.60 -14.85 3.37 -171.89 -0.58 -15.43 16 14 C -0.22 -6.17 10.25 -15.06 -0.15 -6.33 16 15 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 17 N -0.92 -26.42 10.16 55.49 0.56 -25.86 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.14 2.90 6.62 -3.61 -0.02 2.87 16 23 C -0.11 -1.71 4.09 -88.48 -0.36 -2.07 16 24 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 25 C 0.11 1.50 4.72 -3.38 -0.02 1.49 16 26 C 0.20 2.84 5.50 -82.17 -0.45 2.39 16 27 C -0.06 -0.94 2.91 -91.77 -0.27 -1.21 16 28 C -0.13 -1.68 9.06 37.16 0.34 -1.35 16 29 C -0.14 -1.86 9.13 37.16 0.34 -1.52 16 30 N -0.48 -6.29 9.71 -5.42 -0.05 -6.34 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.14 1.28 6.85 -52.49 -0.36 0.92 16 36 H 0.08 1.82 7.47 -51.93 -0.39 1.44 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 2.56 5.83 -51.93 -0.30 2.25 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.02 0.45 7.47 -51.92 -0.39 0.07 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.66 7.07 -51.93 -0.37 0.29 16 44 H 0.07 0.95 7.51 -51.93 -0.39 0.56 16 45 H 0.11 1.85 5.14 -51.92 -0.27 1.58 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.75 7.96 -51.93 -0.41 0.33 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -32.11 398.10 -10.56 -42.67 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.34 Total: 0.95 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.63 Total: 1.84 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.64 Total: -57.95 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.11 -10.56 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048965351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.413 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds