Wall clock time and date at job start Wed Apr 1 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31691 * 119.71539 * 2 1 4 4 C 1.31928 * 121.88016 * 180.28472 * 3 2 1 5 5 C 1.50699 * 119.46317 * 179.69367 * 4 3 2 6 6 C 1.53005 * 109.46477 * 94.98201 * 5 4 3 7 7 C 1.52997 * 109.47397 * 214.98158 * 5 4 3 8 8 C 1.38356 * 121.07686 * 359.68237 * 4 3 2 9 9 C 1.38349 * 119.30331 * 0.02562 * 8 4 3 10 10 C 1.39525 * 119.71556 * 179.69879 * 2 1 3 11 11 C 1.47831 * 120.55710 * 0.03207 * 10 2 1 12 12 O 1.21555 * 120.00358 * 320.75253 * 11 10 2 13 13 N 1.34782 * 120.00034 * 140.76363 * 11 10 2 14 14 C 1.46655 * 125.33532 * 174.83195 * 13 11 10 15 15 C 1.53680 * 107.96782 * 179.28987 * 14 13 11 16 16 H 1.08999 * 113.31907 * 106.33234 * 15 14 13 17 17 C 1.53986 * 109.29316 * 233.05952 * 15 14 13 18 18 N 1.46761 * 106.67696 * 82.34415 * 17 15 14 19 19 C 1.36928 * 125.33600 * 198.42698 * 18 17 15 20 20 H 1.08001 * 120.00201 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00000 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00202 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46644 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47125 * 120.00453 * 23 21 19 26 26 H 1.48501 * 109.47047 * 240.00296 * 23 21 19 27 27 C 1.46661 * 109.32866 * 18.44682 * 18 17 15 28 28 C 1.53674 * 107.97098 * 359.29381 * 27 18 17 29 29 H 1.08997 * 112.77896 * 106.01779 * 28 27 18 30 30 C 1.46762 * 125.33230 * 354.82608 * 13 11 10 31 31 H 1.08998 * 109.47424 * 264.76060 * 1 2 3 32 32 H 1.09000 * 109.47130 * 24.76876 * 1 2 3 33 33 H 1.08999 * 109.46968 * 144.76311 * 1 2 3 34 34 H 1.08999 * 109.47528 * 334.98962 * 5 4 3 35 35 H 1.09001 * 109.47437 * 60.00617 * 6 5 4 36 36 H 1.09003 * 109.47018 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47483 * 300.00081 * 6 5 4 38 38 H 1.08996 * 109.46929 * 60.00378 * 7 5 4 39 39 H 1.09003 * 109.46998 * 180.02562 * 7 5 4 40 40 H 1.09002 * 109.46966 * 300.00264 * 7 5 4 41 41 H 1.08007 * 120.34686 * 179.97438 * 8 4 3 42 42 H 1.08005 * 120.85494 * 179.97438 * 9 8 4 43 43 H 1.08997 * 109.76804 * 59.66409 * 14 13 11 44 44 H 1.08995 * 109.76883 * 298.91581 * 14 13 11 45 45 H 1.08998 * 110.01529 * 323.03972 * 17 15 14 46 46 H 1.08997 * 110.01311 * 201.64877 * 17 15 14 47 47 H 0.96996 * 119.99909 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.76555 * 239.66051 * 27 18 17 49 49 H 1.09008 * 109.76606 * 118.92207 * 27 18 17 50 50 H 1.09003 * 110.01291 * 79.14467 * 30 13 11 51 51 H 1.09003 * 110.01681 * 317.76327 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1936 -0.0056 5 6 4.1692 2.5327 -0.0123 6 6 4.5203 2.9325 1.4223 7 6 5.4500 2.4416 -0.8443 8 6 4.2366 0.0364 -0.0051 9 6 3.5987 -1.1913 0.0007 10 6 2.1986 -1.2118 0.0064 11 6 1.4656 -2.4955 0.0124 12 8 0.4559 -2.6158 0.6785 13 7 1.9169 -3.5327 -0.7205 14 6 1.3474 -4.8842 -0.7184 15 6 2.1545 -5.7402 -1.7071 16 1 2.8178 -6.4539 -1.2184 17 6 1.1914 -6.4079 -2.7060 18 7 0.9044 -5.4115 -3.7446 19 6 -0.1557 -5.4527 -4.6102 20 1 -0.2844 -4.6708 -5.3440 21 6 -1.0651 -6.4994 -4.5446 22 7 -0.9085 -7.4521 -3.6499 23 14 -2.5110 -6.5561 -5.7260 24 1 -2.4603 -5.3768 -6.6270 25 1 -2.4412 -7.7997 -6.5345 26 1 -3.7806 -6.5370 -4.9558 27 6 1.9313 -4.3650 -3.7103 28 6 2.9153 -4.7031 -2.5793 29 1 3.8705 -5.0763 -2.9485 30 6 3.0551 -3.4865 -1.6459 31 1 -0.3634 -0.0938 1.0233 32 1 -0.3633 0.9331 -0.4305 33 1 -0.3633 -0.8394 -0.5929 34 1 3.5066 3.2815 -0.4462 35 1 5.1831 2.1838 1.8563 36 1 5.0198 3.9013 1.4176 37 1 3.6079 2.9974 2.0151 38 1 5.1998 2.1568 -1.8662 39 1 5.9501 3.4101 -0.8487 40 1 6.1127 1.6928 -0.4102 41 1 5.3152 0.0910 -0.0101 42 1 4.1661 -2.1103 0.0008 43 1 0.3040 -4.8451 -1.0311 44 1 1.4170 -5.3119 0.2817 45 1 0.2698 -6.6957 -2.2001 46 1 1.6632 -7.2845 -3.1500 47 1 -1.5442 -8.1833 -3.6038 48 1 1.4662 -3.3983 -3.5176 49 1 2.4604 -4.3363 -4.6629 50 1 3.9906 -3.5482 -1.0899 51 1 3.0262 -2.5648 -2.2272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049064077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:20 Heat of formation + Delta-G solvation = 24.967103 kcal Electronic energy + Delta-G solvation = -30831.138417 eV Core-core repulsion = 26923.830343 eV Total energy + Delta-G solvation = -3907.308074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06409 -39.86559 -38.14719 -35.94041 -35.07113 -33.19621 -32.17619 -31.65362 -30.16299 -29.70626 -27.97374 -27.31325 -25.80316 -25.53368 -24.61517 -22.93923 -22.53865 -20.70043 -20.08437 -19.61754 -19.42256 -17.47511 -17.05427 -16.59951 -16.16412 -15.91215 -15.55672 -14.85794 -14.74565 -14.58757 -14.26899 -14.00625 -13.71725 -13.53344 -13.41727 -13.19262 -12.98522 -12.85030 -12.58340 -12.47322 -12.26593 -12.13177 -12.08766 -11.92717 -11.62906 -11.51540 -11.47637 -11.37847 -11.25995 -10.97357 -10.84298 -10.49202 -10.12066 -10.04371 -10.02363 -9.92838 -9.85159 -9.63909 -9.47625 -8.96412 -8.66312 -8.35453 -6.86295 -5.71288 -3.09677 0.62235 1.05402 2.79847 3.11789 3.39006 3.44822 3.47079 3.61591 3.85182 4.33683 4.42529 4.47057 4.57019 4.71605 4.73353 4.76916 4.84756 4.91378 5.05072 5.14871 5.24999 5.35432 5.37420 5.39275 5.45335 5.48252 5.53382 5.55267 5.61730 5.65058 5.68441 5.73506 5.75932 5.83325 5.87492 5.89457 5.89929 6.05091 6.09660 6.13812 6.27761 6.36549 6.47244 6.55092 6.62683 6.70301 6.78419 7.40996 7.59765 7.66587 7.79136 7.81298 8.26456 8.29378 9.19774 9.80116 10.42703 11.35533 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.002719 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.186774 B =10294.430269 C =10522.138764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.188 3.812 3 N -0.487 5.487 4 C 0.156 3.844 5 C -0.049 4.049 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.185 4.185 9 C -0.040 4.040 10 C -0.181 4.181 11 C 0.575 3.425 12 O -0.530 6.530 13 N -0.600 5.600 14 C 0.122 3.878 15 C -0.123 4.123 16 H 0.089 0.911 17 C 0.170 3.830 18 N -0.600 5.600 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.144 3.856 28 C -0.110 4.110 29 H 0.098 0.902 30 C 0.110 3.890 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.020 0.980 47 H 0.252 0.748 48 H 0.022 0.978 49 H 0.022 0.978 50 H 0.062 0.938 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.285 15.852 8.803 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.050 3.950 3 N -0.196 5.196 4 C 0.018 3.982 5 C -0.068 4.068 6 C -0.199 4.199 7 C -0.205 4.205 8 C -0.205 4.205 9 C -0.066 4.066 10 C -0.186 4.186 11 C 0.363 3.637 12 O -0.407 6.407 13 N -0.333 5.333 14 C 0.001 3.999 15 C -0.144 4.144 16 H 0.107 0.893 17 C 0.044 3.956 18 N -0.326 5.326 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.018 3.982 28 C -0.129 4.129 29 H 0.116 0.884 30 C -0.014 4.014 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.040 0.960 50 H 0.080 0.920 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.033 16.477 9.144 23.496 hybrid contribution -0.066 -0.989 -0.700 1.213 sum 13.967 15.488 8.444 22.500 Atomic orbital electron populations 1.20805 0.87735 1.03449 1.04087 1.21386 0.97294 0.86412 0.89941 1.67419 1.09283 1.28648 1.14264 1.21392 0.89300 0.95401 0.92087 1.20096 0.96523 0.92743 0.97438 1.21800 1.01857 1.01455 0.94750 1.21932 0.96314 1.02387 0.99915 1.21868 1.01583 0.92327 1.04738 1.21883 0.93070 0.98931 0.92714 1.20765 0.94562 0.94875 1.08383 1.17621 0.84024 0.82282 0.79776 1.90792 1.24279 1.82746 1.42911 1.48141 1.32231 1.10900 1.41997 1.21906 0.99386 0.79845 0.98799 1.23216 0.97974 0.96743 0.96420 0.89300 1.21479 0.96860 0.89720 0.87495 1.44203 1.26478 1.23574 1.38314 1.19083 1.00058 1.06465 1.09623 0.90466 1.24783 0.99311 0.97027 0.99343 1.69858 1.37558 1.13158 1.36466 0.86013 0.82288 0.77317 0.79974 1.20539 1.21734 1.21673 1.21131 0.89576 0.92905 0.94564 1.22855 0.99699 0.94357 0.95996 0.88370 1.22126 0.88499 0.99617 0.91128 0.89420 0.90682 0.89917 0.89058 0.92450 0.91772 0.92226 0.92163 0.91734 0.92052 0.84188 0.84045 0.89892 0.92225 0.88457 0.96212 0.93707 0.96024 0.96005 0.91987 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 8.85 36.01 0.32 -1.13 16 2 C 0.19 2.72 6.82 -82.17 -0.56 2.16 16 3 N -0.49 -6.54 10.17 -5.42 -0.06 -6.59 16 4 C 0.16 1.71 5.79 -82.51 -0.48 1.23 16 5 C -0.05 -0.39 3.23 -91.77 -0.30 -0.69 16 6 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 7 C -0.15 -0.89 8.61 37.16 0.32 -0.57 16 8 C -0.19 -1.80 9.16 -39.50 -0.36 -2.16 16 9 C -0.04 -0.45 8.47 -38.87 -0.33 -0.78 16 10 C -0.18 -2.59 5.37 -104.82 -0.56 -3.15 16 11 C 0.58 9.77 6.83 -12.33 -0.08 9.69 16 12 O -0.53 -10.58 15.42 5.32 0.08 -10.50 16 13 N -0.60 -9.75 3.31 -173.45 -0.57 -10.33 16 14 C 0.12 2.20 6.24 -3.60 -0.02 2.18 16 15 C -0.12 -2.14 4.09 -88.47 -0.36 -2.50 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 17 C 0.17 3.91 4.84 -3.39 -0.02 3.90 16 18 N -0.60 -14.88 3.37 -171.88 -0.58 -15.46 16 19 C -0.22 -6.18 10.25 -15.06 -0.15 -6.34 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 22 N -0.92 -26.51 10.16 55.49 0.56 -25.95 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.14 2.89 6.62 -3.60 -0.02 2.87 16 28 C -0.11 -1.71 4.09 -88.48 -0.36 -2.07 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 30 C 0.11 1.47 4.52 -3.39 -0.02 1.45 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.30 6.82 -51.93 -0.35 0.94 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.32 6.48 -51.93 -0.34 -0.02 16 41 H 0.14 0.95 6.29 -52.48 -0.33 0.62 16 42 H 0.14 1.31 5.90 -52.48 -0.31 1.00 16 43 H 0.08 1.82 7.47 -51.93 -0.39 1.43 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 2.56 5.83 -51.93 -0.30 2.25 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.02 0.46 7.47 -51.93 -0.39 0.07 16 49 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 50 H 0.06 0.64 6.58 -51.93 -0.34 0.30 16 51 H 0.07 0.94 7.28 -51.93 -0.38 0.57 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -32.25 393.86 -10.57 -42.81 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.17 Total: -0.12 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.74 Total: 3.09 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.65 Total: -58.33 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.25 -10.57 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049064077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.779 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds