Wall clock time and date at job start Wed Apr 1 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 120.41807 * 2 1 4 4 N 1.31857 * 120.76541 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72235 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76677 * 0.25789 * 5 4 3 7 7 C 1.50695 * 120.41939 * 179.74430 * 6 5 4 8 8 C 1.53001 * 109.47293 * 89.99363 * 7 6 5 9 9 C 1.50695 * 109.47293 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00133 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99952 * 180.02562 * 9 8 7 12 12 C 1.47848 * 122.23334 * 359.71100 * 11 9 8 13 13 C 1.53502 * 111.08406 * 128.29847 * 12 11 9 14 14 C 1.53866 * 111.78660 * 47.69364 * 13 12 11 15 15 C 1.51078 * 107.34899 * 303.73455 * 14 13 12 16 16 H 1.09007 * 108.73906 * 308.52006 * 15 14 13 17 17 C 1.45733 * 122.22871 * 180.02562 * 11 9 8 18 18 H 1.08994 * 111.06568 * 119.46058 * 17 11 9 19 19 C 1.53430 * 116.37758 * 350.95885 * 17 11 9 20 20 C 1.56413 * 101.23802 * 207.70678 * 19 17 11 21 21 N 1.45026 * 118.76159 * 183.59637 * 15 14 13 22 22 C 1.36939 * 126.56002 * 29.03116 * 21 15 14 23 23 H 1.08007 * 120.00081 * 0.02562 * 22 21 15 24 24 C 1.38812 * 120.00096 * 180.02562 * 22 21 15 25 25 N 1.31620 * 119.99934 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00226 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46944 * 59.99255 * 26 24 22 28 28 H 1.48493 * 109.47378 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46672 * 299.99726 * 26 24 22 30 30 C 1.38627 * 120.42107 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46939 * 89.99884 * 1 2 3 32 32 H 1.08998 * 109.47429 * 209.99665 * 1 2 3 33 33 H 1.09002 * 109.47421 * 329.99778 * 1 2 3 34 34 H 1.07999 * 119.61987 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.61237 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47428 * 209.99144 * 7 6 5 37 37 H 1.08996 * 109.47062 * 329.99843 * 7 6 5 38 38 H 1.08999 * 109.47432 * 300.00136 * 8 7 6 39 39 H 1.09009 * 109.46853 * 60.00091 * 8 7 6 40 40 H 1.08997 * 109.16646 * 247.94945 * 12 11 9 41 41 H 1.09006 * 109.15624 * 7.13137 * 12 11 9 42 42 H 1.08998 * 108.40610 * 287.44528 * 13 12 11 43 43 H 1.09000 * 109.40648 * 168.61875 * 13 12 11 44 44 H 1.09006 * 109.88079 * 184.26881 * 14 13 12 45 45 H 1.09001 * 109.88468 * 63.19482 * 14 13 12 46 46 H 1.08995 * 110.98983 * 325.35672 * 19 17 11 47 47 H 1.08999 * 110.98667 * 89.16637 * 19 17 11 48 48 H 1.09006 * 109.27975 * 262.38299 * 20 19 17 49 49 H 1.09008 * 110.35252 * 141.37201 * 20 19 17 50 50 H 0.97003 * 119.99945 * 180.02562 * 25 24 22 51 51 H 1.07995 * 120.79071 * 359.95783 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2256 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0075 7 6 4.4027 -2.4191 -0.0144 8 6 4.6770 -2.8569 1.4257 9 6 5.4843 -4.1293 1.4188 10 8 5.8088 -4.6360 0.3657 11 7 5.8458 -4.7044 2.5829 12 6 5.4826 -4.1263 3.8943 13 6 4.8142 -5.1750 4.7941 14 6 5.6031 -6.4959 4.8149 15 6 5.7357 -6.9639 3.3846 16 1 4.7476 -6.9681 2.9244 17 6 6.6264 -5.9340 2.6329 18 1 7.5735 -5.7761 3.1487 19 6 6.8373 -6.6623 1.2990 20 6 7.0017 -8.1410 1.7817 21 7 6.3755 -8.2391 3.1241 22 6 6.3988 -9.3253 3.9577 23 1 5.9058 -9.2801 4.9176 24 6 7.0561 -10.4845 3.5690 25 7 7.6565 -10.5398 2.3990 26 14 7.0874 -11.9665 4.7058 27 1 5.6970 -12.4147 4.9730 28 1 7.8471 -13.0681 4.0622 29 1 7.7423 -11.5947 5.9857 30 6 2.2089 -1.1954 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6675 2.1277 0.0004 35 1 5.3047 0.1287 -0.0023 36 1 3.8458 -3.2004 -0.5318 37 1 5.3484 -2.2461 -0.5279 38 1 5.2338 -2.0757 1.9432 39 1 3.7312 -3.0299 1.9393 40 1 6.3851 -3.7689 4.3901 41 1 4.8043 -3.2871 3.7397 42 1 3.8107 -5.3655 4.4136 43 1 4.7420 -4.7872 5.8102 44 1 5.0636 -7.2406 5.4002 45 1 6.5913 -6.3307 5.2440 46 1 5.9632 -6.5600 0.6559 47 1 7.7347 -6.3029 0.7956 48 1 8.0627 -8.3825 1.8467 49 1 6.5068 -8.8229 1.0900 50 1 8.1155 -11.3500 2.1272 51 1 1.6888 -2.1419 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049586834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:51 Heat of formation + Delta-G solvation = 23.138992 kcal Electronic energy + Delta-G solvation = -30215.870286 eV Core-core repulsion = 26308.482939 eV Total energy + Delta-G solvation = -3907.387346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69214 -40.22501 -37.89348 -35.38090 -34.80115 -33.89841 -32.59838 -32.22674 -30.53445 -28.82145 -28.17417 -27.64065 -25.71794 -24.49284 -23.97465 -23.18141 -21.51169 -21.31866 -20.49015 -19.69172 -18.71788 -17.27269 -16.97791 -16.86037 -16.20008 -15.66528 -15.50276 -14.81636 -14.71889 -14.55114 -14.24901 -14.09121 -13.91776 -13.69089 -13.47852 -13.33450 -13.18860 -13.09006 -12.77963 -12.66705 -12.43657 -12.28707 -12.21091 -11.88075 -11.68565 -11.58580 -11.21534 -11.12964 -10.83790 -10.71767 -10.51939 -10.43238 -10.11505 -10.00077 -9.88693 -9.84139 -9.70226 -9.60572 -9.14568 -8.91578 -8.57173 -8.21785 -6.82276 -5.69178 -3.03644 0.78927 0.98247 2.81814 3.14310 3.40577 3.44745 3.46428 3.49453 4.12102 4.35508 4.43168 4.49878 4.63907 4.67947 4.69921 4.79294 4.86126 4.92372 5.02787 5.08309 5.18068 5.26608 5.29438 5.32200 5.37454 5.43948 5.44853 5.58195 5.61212 5.67552 5.69212 5.76651 5.85647 5.90796 5.95334 5.99399 6.07165 6.08765 6.24172 6.28604 6.39083 6.43167 6.56448 6.72515 6.77849 6.90399 7.19404 7.58627 7.65748 7.69092 7.72736 7.85021 8.25906 8.42437 9.20041 9.83952 10.52465 11.42658 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.002199 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.988022 B =12729.589442 C =13015.435070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.089 3.911 4 N -0.481 5.481 5 C 0.094 3.906 6 C -0.124 4.124 7 C -0.062 4.062 8 C -0.134 4.134 9 C 0.515 3.485 10 O -0.532 6.532 11 N -0.601 5.601 12 C 0.110 3.890 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.017 0.983 17 C 0.116 3.884 18 H 0.077 0.923 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.593 5.593 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C -0.075 4.075 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.040 0.960 50 H 0.253 0.747 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 22.627 -1.069 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.069 4.069 4 N -0.188 5.188 5 C -0.063 4.063 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.174 4.174 9 C 0.302 3.698 10 O -0.409 6.409 11 N -0.334 5.334 12 C -0.013 4.013 13 C -0.168 4.168 14 C -0.154 4.154 15 C 0.050 3.950 16 H 0.034 0.966 17 C 0.012 3.988 18 H 0.095 0.905 19 C -0.169 4.169 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.355 4.355 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.741 3.259 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.101 4.101 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.565 22.925 -1.659 25.296 hybrid contribution -0.405 -1.628 0.784 1.851 sum -10.970 21.297 -0.875 23.972 Atomic orbital electron populations 1.20733 0.90206 1.03200 1.02673 1.20952 0.97606 0.94158 1.01079 1.22649 0.90010 0.97419 0.96780 1.67686 1.08341 1.31290 1.11482 1.22702 1.00357 0.87121 0.96120 1.20976 0.94534 0.96819 1.00236 1.20286 1.00399 0.93324 0.95984 1.21686 1.01037 0.96181 0.98481 1.20443 0.80258 0.85690 0.83358 1.90709 1.55700 1.63905 1.30634 1.48042 1.53762 1.26221 1.05333 1.21841 0.99965 0.95896 0.83594 1.22027 0.99817 0.95979 0.98971 1.21432 1.00110 0.95230 0.98659 1.20764 0.94585 0.86625 0.93040 0.96569 1.22426 0.94189 0.82458 0.99729 0.90506 1.23127 1.02337 0.96598 0.94814 1.21910 0.98402 0.89525 0.85410 1.44083 1.62266 1.08573 1.16823 1.18932 1.29101 0.89692 0.97765 0.90436 1.24810 1.00284 0.98088 0.97213 1.69940 1.39414 1.27518 1.19807 0.86226 0.77487 0.82449 0.79740 1.21227 1.21619 1.21194 1.21466 0.93507 0.98338 0.96764 0.90853 0.91200 0.91166 0.83054 0.82789 0.89756 0.89613 0.89074 0.89142 0.91685 0.90313 0.91999 0.90906 0.91458 0.91777 0.89899 0.92075 0.92729 0.94214 0.93667 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.04 36.00 0.36 -0.20 16 2 C -0.14 -1.05 5.90 -104.48 -0.62 -1.66 16 3 C 0.09 0.76 10.86 -17.54 -0.19 0.57 16 4 N -0.48 -5.03 10.36 -13.25 -0.14 -5.17 16 5 C 0.09 0.89 10.86 -17.55 -0.19 0.70 16 6 C -0.12 -1.12 5.15 -104.48 -0.54 -1.65 16 7 C -0.06 -0.59 4.66 -27.88 -0.13 -0.72 16 8 C -0.13 -1.31 4.10 -27.88 -0.11 -1.42 16 9 C 0.51 7.44 7.70 -10.99 -0.08 7.36 16 10 O -0.53 -9.59 12.78 5.55 0.07 -9.52 16 11 N -0.60 -8.90 2.91 -163.50 -0.48 -9.38 16 12 C 0.11 1.22 6.37 -3.04 -0.02 1.20 16 13 C -0.13 -1.56 5.95 -26.02 -0.15 -1.71 16 14 C -0.12 -1.94 5.43 -27.25 -0.15 -2.09 16 15 C 0.16 3.28 2.60 -68.34 -0.18 3.10 16 16 H 0.02 0.37 8.06 -51.93 -0.42 -0.04 16 17 C 0.12 2.17 3.27 -66.77 -0.22 1.95 16 18 H 0.08 1.47 8.13 -51.93 -0.42 1.05 16 19 C -0.13 -2.74 5.14 -24.67 -0.13 -2.87 16 20 C 0.17 4.34 5.49 -1.13 -0.01 4.34 16 21 N -0.59 -15.13 3.35 -162.59 -0.54 -15.68 16 22 C -0.23 -6.23 9.93 -15.06 -0.15 -6.38 16 23 H 0.08 2.03 7.28 -52.48 -0.38 1.65 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.25 10.46 55.49 0.58 -26.67 16 26 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 C -0.07 -0.62 9.55 -39.28 -0.37 -1.00 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 33 H 0.07 0.28 8.09 -51.93 -0.42 -0.15 16 34 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.09 0.74 8.01 -51.93 -0.42 0.33 16 39 H 0.09 0.78 7.77 -51.92 -0.40 0.37 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.65 6.18 -51.93 -0.32 0.33 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 45 H 0.06 1.09 8.11 -51.93 -0.42 0.66 16 46 H 0.08 1.82 6.14 -51.93 -0.32 1.50 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.05 1.50 7.19 -51.93 -0.37 1.13 16 49 H 0.04 1.10 7.81 -51.92 -0.41 0.70 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -33.19 397.06 -11.00 -44.19 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.47 Total: -0.01 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.97 Total: -0.79 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.58 Total: -56.89 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.19 -11.00 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049586834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.328 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds