Wall clock time and date at job start Wed Apr 1 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 120.41807 * 2 1 4 4 N 1.31857 * 120.76541 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72235 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76677 * 0.25789 * 5 4 3 7 7 C 1.50695 * 120.41939 * 179.74430 * 6 5 4 8 8 C 1.53001 * 109.47293 * 89.99363 * 7 6 5 9 9 C 1.50695 * 109.47293 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00133 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99952 * 180.02562 * 9 8 7 12 12 C 1.47848 * 122.23334 * 359.71100 * 11 9 8 13 13 C 1.53502 * 111.08406 * 128.29847 * 12 11 9 14 14 C 1.53866 * 111.78660 * 47.69364 * 13 12 11 15 15 C 1.51078 * 107.34899 * 303.73455 * 14 13 12 16 16 H 1.09007 * 108.73906 * 308.52006 * 15 14 13 17 17 C 1.45733 * 122.22871 * 180.02562 * 11 9 8 18 18 H 1.08994 * 111.06568 * 119.46058 * 17 11 9 19 19 C 1.53430 * 116.37758 * 350.95885 * 17 11 9 20 20 C 1.56413 * 101.23802 * 207.70678 * 19 17 11 21 21 N 1.45026 * 118.76159 * 183.59637 * 15 14 13 22 22 C 1.36939 * 126.56002 * 29.03116 * 21 15 14 23 23 H 1.08007 * 120.00081 * 0.02562 * 22 21 15 24 24 C 1.38812 * 120.00096 * 180.02562 * 22 21 15 25 25 N 1.31620 * 119.99934 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00226 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46944 * 59.99255 * 26 24 22 28 28 H 1.48493 * 109.47378 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46672 * 299.99726 * 26 24 22 30 30 C 1.38627 * 120.42107 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46939 * 89.99884 * 1 2 3 32 32 H 1.08998 * 109.47429 * 209.99665 * 1 2 3 33 33 H 1.09002 * 109.47421 * 329.99778 * 1 2 3 34 34 H 1.07999 * 119.61987 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.61237 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47428 * 209.99144 * 7 6 5 37 37 H 1.08996 * 109.47062 * 329.99843 * 7 6 5 38 38 H 1.08999 * 109.47432 * 300.00136 * 8 7 6 39 39 H 1.09009 * 109.46853 * 60.00091 * 8 7 6 40 40 H 1.08997 * 109.16646 * 247.94945 * 12 11 9 41 41 H 1.09006 * 109.15624 * 7.13137 * 12 11 9 42 42 H 1.08998 * 108.40610 * 287.44528 * 13 12 11 43 43 H 1.09000 * 109.40648 * 168.61875 * 13 12 11 44 44 H 1.09006 * 109.88079 * 184.26881 * 14 13 12 45 45 H 1.09001 * 109.88468 * 63.19482 * 14 13 12 46 46 H 1.08995 * 110.98983 * 325.35672 * 19 17 11 47 47 H 1.08999 * 110.98667 * 89.16637 * 19 17 11 48 48 H 1.09006 * 109.27975 * 262.38299 * 20 19 17 49 49 H 1.09008 * 110.35252 * 141.37201 * 20 19 17 50 50 H 0.97003 * 119.99945 * 180.02562 * 25 24 22 51 51 H 1.07995 * 120.79071 * 359.95783 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2256 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0075 7 6 4.4027 -2.4191 -0.0144 8 6 4.6770 -2.8569 1.4257 9 6 5.4843 -4.1293 1.4188 10 8 5.8088 -4.6360 0.3657 11 7 5.8458 -4.7044 2.5829 12 6 5.4826 -4.1263 3.8943 13 6 4.8142 -5.1750 4.7941 14 6 5.6031 -6.4959 4.8149 15 6 5.7357 -6.9639 3.3846 16 1 4.7476 -6.9681 2.9244 17 6 6.6264 -5.9340 2.6329 18 1 7.5735 -5.7761 3.1487 19 6 6.8373 -6.6623 1.2990 20 6 7.0017 -8.1410 1.7817 21 7 6.3755 -8.2391 3.1241 22 6 6.3988 -9.3253 3.9577 23 1 5.9058 -9.2801 4.9176 24 6 7.0561 -10.4845 3.5690 25 7 7.6565 -10.5398 2.3990 26 14 7.0874 -11.9665 4.7058 27 1 5.6970 -12.4147 4.9730 28 1 7.8471 -13.0681 4.0622 29 1 7.7423 -11.5947 5.9857 30 6 2.2089 -1.1954 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6675 2.1277 0.0004 35 1 5.3047 0.1287 -0.0023 36 1 3.8458 -3.2004 -0.5318 37 1 5.3484 -2.2461 -0.5279 38 1 5.2338 -2.0757 1.9432 39 1 3.7312 -3.0299 1.9393 40 1 6.3851 -3.7689 4.3901 41 1 4.8043 -3.2871 3.7397 42 1 3.8107 -5.3655 4.4136 43 1 4.7420 -4.7872 5.8102 44 1 5.0636 -7.2406 5.4002 45 1 6.5913 -6.3307 5.2440 46 1 5.9632 -6.5600 0.6559 47 1 7.7347 -6.3029 0.7956 48 1 8.0627 -8.3825 1.8467 49 1 6.5068 -8.8229 1.0900 50 1 8.1155 -11.3500 2.1272 51 1 1.6888 -2.1419 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049586834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:50 Heat of formation + Delta-G solvation = 3.897022 kcal Electronic energy + Delta-G solvation = -30216.704680 eV Core-core repulsion = 26308.482939 eV Total energy + Delta-G solvation = -3908.221741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.70408 -41.15596 -39.30437 -36.86377 -35.61441 -34.45549 -34.21432 -33.82791 -31.59239 -30.45924 -29.61338 -28.13199 -26.84435 -26.28802 -25.12384 -23.88869 -22.82459 -22.50981 -21.65106 -21.33117 -19.89961 -18.62262 -17.86140 -17.63493 -17.38846 -17.17503 -16.72771 -16.52409 -15.87192 -15.52328 -15.38468 -15.26596 -15.14558 -14.86766 -14.50773 -14.25814 -14.03278 -13.93063 -13.83258 -13.74089 -13.60451 -13.37247 -13.17442 -13.17151 -13.04646 -12.87019 -12.68459 -12.41032 -12.21920 -12.11407 -11.98145 -11.92485 -11.75871 -11.68710 -11.55904 -11.41430 -10.76639 -10.54992 -10.36201 -10.25380 -9.68452 -9.51174 -8.91391 -7.84395 -5.21530 0.16871 0.35509 1.44755 1.48670 1.54875 1.70874 2.01258 2.50142 2.84754 3.32817 3.33861 3.49837 3.64804 3.85951 3.87845 3.94152 3.98136 4.05340 4.08298 4.09349 4.10751 4.21850 4.24089 4.27508 4.36443 4.49634 4.56752 4.59486 4.62695 4.69084 4.72614 4.83912 4.84921 4.90560 4.93204 4.99451 5.04523 5.11178 5.16212 5.18998 5.26069 5.29041 5.36053 5.41512 5.44487 5.47750 5.59388 5.63434 5.73350 5.83782 6.17663 6.58491 7.04757 7.05909 7.27892 7.75278 8.45576 9.27109 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.002199 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.988022 B =12729.589442 C =13015.435070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C 0.079 3.921 4 N -0.507 5.507 5 C 0.082 3.918 6 C -0.124 4.124 7 C -0.054 4.054 8 C -0.119 4.119 9 C 0.508 3.492 10 O -0.576 6.576 11 N -0.603 5.603 12 C 0.105 3.895 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.153 3.847 16 H 0.000 1.000 17 C 0.132 3.868 18 H 0.075 0.925 19 C -0.112 4.112 20 C 0.181 3.819 21 N -0.613 5.613 22 C -0.233 4.233 23 H 0.089 0.911 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.980 3.020 27 H -0.277 1.277 28 H -0.298 1.298 29 H -0.272 1.272 30 C -0.083 4.083 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.172 0.828 35 H 0.163 0.837 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.023 0.977 49 H -0.001 1.001 50 H 0.246 0.754 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.284 25.437 1.200 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.078 4.078 4 N -0.214 5.214 5 C -0.075 4.075 6 C -0.126 4.126 7 C -0.093 4.093 8 C -0.159 4.159 9 C 0.298 3.702 10 O -0.456 6.456 11 N -0.335 5.335 12 C -0.016 4.016 13 C -0.158 4.158 14 C -0.151 4.151 15 C 0.044 3.956 16 H 0.017 0.983 17 C 0.026 3.974 18 H 0.093 0.907 19 C -0.151 4.151 20 C 0.056 3.944 21 N -0.338 5.338 22 C -0.361 4.361 23 H 0.107 0.893 24 C -0.264 4.264 25 N -0.604 5.604 26 Si 0.808 3.192 27 H -0.203 1.203 28 H -0.224 1.224 29 H -0.198 1.198 30 C -0.108 4.108 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.189 0.811 35 H 0.180 0.820 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.041 0.959 49 H 0.017 0.983 50 H 0.055 0.945 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.609 25.793 0.655 28.718 hybrid contribution 0.151 -2.462 0.021 2.467 sum -12.458 23.331 0.676 26.458 Atomic orbital electron populations 1.20789 0.88279 1.04211 1.03374 1.21225 0.98988 0.93553 0.99847 1.23064 0.89691 0.98731 0.96348 1.67694 1.09418 1.31850 1.12484 1.22873 1.00932 0.87173 0.96484 1.20844 0.94790 0.96088 1.00901 1.20153 0.99909 0.93323 0.95903 1.21667 1.01336 0.93848 0.99012 1.21324 0.79760 0.86669 0.82403 1.90692 1.57302 1.65375 1.32238 1.48152 1.53208 1.24774 1.07387 1.22196 1.01733 0.96346 0.81347 1.22008 0.98824 0.93504 1.01512 1.21414 1.00811 0.97651 0.95196 1.20962 0.93390 0.85044 0.96154 0.98261 1.21966 0.94303 0.84039 0.97056 0.90706 1.22848 1.01981 0.94130 0.96115 1.21616 0.95893 0.91599 0.85295 1.44352 1.62446 1.10353 1.16601 1.19371 1.28194 0.90391 0.98191 0.89329 1.25723 1.00651 1.01193 0.98832 1.70182 1.40696 1.27771 1.21783 0.85128 0.77610 0.78483 0.77976 1.20322 1.22417 1.19820 1.21704 0.93381 0.99234 0.96517 0.90201 0.90570 0.89820 0.81124 0.81980 0.91073 0.90570 0.86381 0.86879 0.89975 0.86193 0.91863 0.87206 0.92642 0.91976 0.90804 0.91835 0.95908 0.98270 0.94490 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.04 71.23 0.72 -0.07 16 2 C -0.13 -1.73 5.90 -19.77 -0.12 -1.85 16 3 C 0.08 1.18 10.86 84.69 0.92 2.10 16 4 N -0.51 -9.79 10.36 -195.83 -2.03 -11.82 16 5 C 0.08 1.42 10.86 84.67 0.92 2.34 16 6 C -0.12 -2.00 5.15 -19.77 -0.10 -2.10 16 7 C -0.05 -0.96 4.66 29.85 0.14 -0.83 16 8 C -0.12 -1.94 4.10 29.85 0.12 -1.82 16 9 C 0.51 13.81 7.70 87.66 0.67 14.49 16 10 O -0.58 -20.82 12.78 -3.04 -0.04 -20.86 16 11 N -0.60 -16.54 2.91 -789.57 -2.30 -18.84 16 12 C 0.10 1.85 6.37 86.29 0.55 2.40 16 13 C -0.12 -2.41 5.95 31.05 0.18 -2.22 16 14 C -0.11 -3.57 5.43 30.26 0.16 -3.41 16 15 C 0.15 6.31 2.60 45.51 0.12 6.43 16 16 H 0.00 0.00 8.06 -2.38 -0.02 -0.02 16 17 C 0.13 4.91 3.27 46.15 0.15 5.06 16 18 H 0.08 2.83 8.13 -2.39 -0.02 2.81 16 19 C -0.11 -4.94 5.14 31.93 0.16 -4.77 16 20 C 0.18 9.78 5.49 87.19 0.48 10.25 16 21 N -0.61 -32.46 3.35 -668.31 -2.24 -34.70 16 22 C -0.23 -13.10 9.93 84.03 0.83 -12.26 16 23 H 0.09 4.66 7.28 -2.91 -0.02 4.64 16 24 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 25 N -0.96 -59.51 10.46 21.65 0.23 -59.29 16 26 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 28 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 30 C -0.08 -1.18 9.55 22.47 0.21 -0.97 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.47 8.10 -2.39 -0.02 0.45 16 33 H 0.08 0.39 8.09 -2.39 -0.02 0.37 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 37 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 38 H 0.12 1.37 8.01 -2.39 -0.02 1.35 16 39 H 0.11 1.41 7.77 -2.38 -0.02 1.39 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 1.22 6.18 -2.38 -0.01 1.20 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.88 7.67 -2.38 -0.02 1.86 16 45 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 46 H 0.07 3.40 6.14 -2.39 -0.01 3.38 16 47 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 48 H 0.02 1.35 7.19 -2.38 -0.02 1.33 16 49 H 0.00 -0.06 7.81 -2.38 -0.02 -0.08 16 50 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 51 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -77.65 397.06 3.15 -74.50 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.91 Total: 13.58 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.60 Total: 9.10 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -6.34 Total: -124.64 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.04 Total: -20.86 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.65 3.15 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049586834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.394 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds