Wall clock time and date at job start Wed Apr 1 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.46201 * 2 1 4 4 C 1.38353 * 119.30653 * 179.76516 * 3 2 1 5 5 C 1.50698 * 120.86032 * 180.25586 * 4 3 2 6 6 C 1.40030 * 118.28454 * 0.52531 * 4 3 2 7 7 C 1.47839 * 120.55771 * 179.73043 * 6 4 3 8 8 O 1.21553 * 120.00160 * 269.72120 * 7 6 4 9 9 N 1.34780 * 119.99861 * 89.72373 * 7 6 4 10 10 C 1.47848 * 122.22656 * 0.02562 * 9 7 6 11 11 C 1.52714 * 111.06293 * 232.46725 * 10 9 7 12 12 C 1.53877 * 111.51983 * 311.46261 * 11 10 9 13 13 C 1.50818 * 107.40837 * 56.71528 * 12 11 10 14 14 H 1.09000 * 107.80739 * 51.23382 * 13 12 11 15 15 C 1.45730 * 122.22335 * 180.02562 * 9 7 6 16 16 H 1.09004 * 111.06770 * 241.42399 * 15 9 7 17 17 C 1.53429 * 116.36889 * 9.92345 * 15 9 7 18 18 C 1.55479 * 101.66791 * 152.72030 * 17 15 9 19 19 N 1.45024 * 119.37758 * 175.79325 * 13 12 11 20 20 C 1.36945 * 126.55785 * 331.77882 * 19 13 12 21 21 H 1.07997 * 119.99756 * 359.71369 * 20 19 13 22 22 C 1.38805 * 119.99878 * 179.71275 * 20 19 13 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.39518 * 118.88180 * 359.46046 * 6 4 3 29 29 C 1.50699 * 119.71814 * 180.27567 * 28 6 4 30 30 N 1.31698 * 120.56598 * 0.29555 * 28 6 4 31 31 H 1.08999 * 109.47069 * 269.97459 * 1 2 3 32 32 H 1.08998 * 109.47231 * 29.97099 * 1 2 3 33 33 H 1.08995 * 109.47700 * 149.97611 * 1 2 3 34 34 H 1.08005 * 120.34500 * 0.03129 * 3 2 1 35 35 H 1.09003 * 109.47096 * 270.27881 * 5 4 3 36 36 H 1.08996 * 109.46966 * 30.27513 * 5 4 3 37 37 H 1.08999 * 109.47170 * 150.27198 * 5 4 3 38 38 H 1.09000 * 109.16502 * 352.87659 * 10 9 7 39 39 H 1.09004 * 109.15806 * 112.11139 * 10 9 7 40 40 H 1.08997 * 109.07172 * 71.99133 * 11 10 9 41 41 H 1.09001 * 109.07322 * 191.01352 * 11 10 9 42 42 H 1.08997 * 109.88009 * 176.38361 * 12 11 10 43 43 H 1.08993 * 109.88437 * 297.40271 * 12 11 10 44 44 H 1.09004 * 110.98512 * 34.62774 * 17 15 9 45 45 H 1.08993 * 111.02475 * 270.82899 * 17 15 9 46 46 H 1.09005 * 109.95422 * 218.02482 * 18 17 15 47 47 H 1.08996 * 109.95397 * 96.78752 * 18 17 15 48 48 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.46865 * 89.99531 * 29 28 6 50 50 H 1.08997 * 109.47164 * 209.99911 * 29 28 6 51 51 H 1.09002 * 109.46800 * 330.00111 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2009 0.0049 5 6 4.3475 2.4924 0.0109 6 6 4.2312 -0.0340 -0.0015 7 6 5.7082 -0.0966 -0.0026 8 8 6.3147 -0.1223 -1.0558 9 7 6.3824 -0.1253 1.1641 10 6 5.6950 -0.0968 2.4727 11 6 6.2551 1.0105 3.3629 12 6 7.7931 0.9802 3.4013 13 6 8.2822 1.0912 1.9789 14 1 7.7899 1.9503 1.5232 15 6 7.8374 -0.1864 1.2195 16 1 8.1726 -1.0947 1.7204 17 6 8.5792 0.0200 -0.1076 18 6 9.9392 0.5957 0.3786 19 7 9.7066 1.1809 1.7214 20 6 10.6559 1.7017 2.5598 21 1 10.3667 2.1031 3.5198 22 6 11.9897 1.7137 2.1757 23 7 12.3420 1.2250 1.0054 24 14 13.2845 2.4249 3.3190 25 1 14.6208 2.3190 2.6801 26 1 12.9761 3.8521 3.5893 27 1 13.2860 1.6681 4.5967 28 6 3.4716 -1.2043 -0.0011 29 6 4.1626 -2.5435 -0.0017 30 7 2.1558 -1.1487 -0.0006 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6443 2.1381 0.0005 35 1 4.5341 2.8089 -1.0154 36 1 3.7722 3.2598 0.5288 37 1 5.2977 2.3427 0.5235 38 1 4.6305 0.0757 2.3141 39 1 5.8314 -1.0575 2.9694 40 1 5.9273 1.9764 2.9786 41 1 5.8721 0.8816 4.3752 42 1 8.1657 1.8181 3.9906 43 1 8.1346 0.0407 3.8355 44 1 8.0555 0.7368 -0.7401 45 1 8.7200 -0.9272 -0.6282 46 1 10.2837 1.3676 -0.3096 47 1 10.6788 -0.2022 0.4439 48 1 13.2740 1.2338 0.7369 49 1 4.3300 -2.8664 1.0258 50 1 3.5380 -3.2744 -0.5151 51 1 5.1198 -2.4581 -0.5162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049600788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:40 Heat of formation + Delta-G solvation = 28.188518 kcal Electronic energy + Delta-G solvation = -31840.129168 eV Core-core repulsion = 27932.960785 eV Total energy + Delta-G solvation = -3907.168383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.16203 -39.83491 -37.71165 -35.46756 -34.38088 -33.89763 -32.65970 -32.10368 -29.49380 -28.97903 -28.28975 -27.95166 -27.40213 -24.63807 -24.45447 -22.46012 -21.53745 -21.32978 -20.81579 -19.75844 -19.09140 -17.28162 -16.98018 -16.46457 -15.80246 -15.31048 -15.08155 -14.80726 -14.65762 -14.58428 -14.13765 -14.00243 -13.57378 -13.47286 -13.44423 -13.39185 -13.16682 -12.95494 -12.73886 -12.48268 -12.47063 -12.32462 -12.18435 -11.95806 -11.91743 -11.74011 -11.58758 -11.14642 -10.85912 -10.73439 -10.61620 -10.49654 -10.13021 -10.03909 -9.87737 -9.77860 -9.62793 -9.62342 -9.11892 -8.86675 -8.59029 -8.28493 -6.83869 -5.70502 -3.05082 0.73115 1.01423 2.67243 3.07016 3.39987 3.43723 3.44661 3.45947 3.93657 4.33855 4.36765 4.46741 4.49219 4.81900 4.84006 5.04104 5.09481 5.18668 5.18794 5.26233 5.27805 5.33104 5.34511 5.41067 5.41984 5.45878 5.47187 5.56551 5.61971 5.65437 5.74735 5.82347 5.84540 5.90416 5.94703 5.99470 6.06393 6.07138 6.22861 6.27600 6.36443 6.45846 6.53454 6.69830 6.75344 6.87017 7.14774 7.56017 7.60249 7.66788 7.77297 7.83415 8.24363 8.31940 9.18812 9.82593 10.50545 11.41349 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.003000 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.132575 B = 9329.819212 C = 9622.386180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.142 3.858 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.125 4.125 6 C -0.177 4.177 7 C 0.572 3.428 8 O -0.521 6.521 9 N -0.590 5.590 10 C 0.112 3.888 11 C -0.128 4.128 12 C -0.116 4.116 13 C 0.161 3.839 14 H 0.015 0.985 15 C 0.116 3.884 16 H 0.082 0.918 17 C -0.131 4.131 18 C 0.173 3.827 19 N -0.591 5.591 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.286 1.286 27 H -0.285 1.285 28 C 0.170 3.830 29 C -0.110 4.110 30 N -0.489 5.489 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.056 0.944 48 H 0.253 0.747 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.843 -2.575 1.200 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.203 4.203 4 C -0.009 4.009 5 C -0.182 4.182 6 C -0.182 4.182 7 C 0.359 3.641 8 O -0.397 6.397 9 N -0.322 5.322 10 C -0.010 4.010 11 C -0.167 4.167 12 C -0.155 4.155 13 C 0.052 3.948 14 H 0.032 0.968 15 C 0.012 3.988 16 H 0.099 0.901 17 C -0.169 4.169 18 C 0.048 3.952 19 N -0.316 5.316 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.212 1.212 28 C 0.032 3.968 29 C -0.168 4.168 30 N -0.200 5.200 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.720 -3.313 0.606 22.969 hybrid contribution 1.153 1.213 0.677 1.805 sum -21.568 -2.100 1.283 21.708 Atomic orbital electron populations 1.20730 0.88626 1.03561 1.03178 1.21366 0.97021 0.88108 0.93056 1.21734 0.93642 0.99445 1.05470 1.20347 0.93718 0.94563 0.92236 1.20945 1.00277 0.93201 1.03731 1.20754 0.94976 0.94493 1.07995 1.17924 0.85878 0.76591 0.83756 1.90821 1.68489 1.49516 1.30893 1.48012 1.07427 1.71763 1.05047 1.21670 0.96233 0.99643 0.83498 1.21899 0.97139 0.98554 0.99099 1.21397 0.92863 1.02504 0.98714 1.20591 0.87282 0.93855 0.93099 0.96789 1.22399 0.76865 0.99592 0.99930 0.90056 1.22986 0.97397 1.01714 0.94837 1.21732 0.91216 0.96880 0.85345 1.44056 1.00332 1.70658 1.16533 1.18929 0.86420 1.32558 0.97680 0.90424 1.24803 0.97064 1.01219 0.97187 1.69937 1.16341 1.50526 1.19838 0.86232 0.81113 0.78800 0.79789 1.21611 1.21220 1.21187 1.21261 0.88814 0.94610 0.92114 1.20811 1.00306 0.92162 1.03475 1.67358 1.08826 1.29120 1.14696 0.90236 0.90609 0.90362 0.84406 0.89762 0.90461 0.90461 0.90826 0.91398 0.91883 0.90867 0.91366 0.91739 0.90058 0.91987 0.94243 0.92545 0.93644 0.89949 0.89928 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.16 36.00 0.37 -0.34 16 2 C 0.14 1.48 6.78 -82.51 -0.56 0.92 16 3 C -0.18 -1.82 9.43 -39.50 -0.37 -2.19 16 4 C 0.00 -0.01 5.86 -103.91 -0.61 -0.62 16 5 C -0.13 -1.39 9.69 36.00 0.35 -1.04 16 6 C -0.18 -2.44 3.79 -104.82 -0.40 -2.83 16 7 C 0.57 9.22 4.22 -12.33 -0.05 9.17 16 8 O -0.52 -10.18 13.93 5.32 0.07 -10.11 16 9 N -0.59 -9.08 2.91 -165.32 -0.48 -9.57 16 10 C 0.11 1.38 6.31 -3.45 -0.02 1.36 16 11 C -0.13 -1.60 5.92 -26.42 -0.16 -1.75 16 12 C -0.12 -1.93 5.45 -27.37 -0.15 -2.08 16 13 C 0.16 3.26 2.56 -68.68 -0.18 3.09 16 14 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 15 C 0.12 2.15 3.32 -66.99 -0.22 1.93 16 16 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.13 -2.74 5.01 -25.19 -0.13 -2.86 16 18 C 0.17 4.31 5.47 -1.73 -0.01 4.30 16 19 N -0.59 -14.88 3.35 -163.70 -0.55 -15.43 16 20 C -0.23 -6.19 9.95 -15.06 -0.15 -6.34 16 21 H 0.08 2.02 7.31 -52.49 -0.38 1.63 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -27.02 10.46 55.49 0.58 -26.44 16 24 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 28 C 0.17 2.22 6.82 -82.17 -0.56 1.66 16 29 C -0.11 -1.26 9.79 36.01 0.35 -0.90 16 30 N -0.49 -6.09 10.17 -5.42 -0.06 -6.15 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 38 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 43 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 44 H 0.08 1.78 6.21 -51.93 -0.32 1.46 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16 47 H 0.06 1.53 7.19 -51.93 -0.37 1.16 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.08 1.02 7.07 -51.93 -0.37 0.66 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -32.39 394.72 -10.52 -42.91 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.42 Total: 0.75 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.59 Total: 1.19 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.51 Total: -57.58 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.39 -10.52 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049600788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.096 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds