Wall clock time and date at job start Wed Apr 1 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38351 * 119.46192 * 2 1 4 4 C 1.38356 * 119.30366 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.85556 * 179.97438 * 4 3 2 6 6 C 1.40021 * 118.28904 * 0.25822 * 4 3 2 7 7 C 1.47845 * 120.56126 * 179.72815 * 6 4 3 8 8 O 1.21545 * 120.00406 * 89.99489 * 7 6 4 9 9 N 1.34777 * 119.99665 * 269.99502 * 7 6 4 10 10 C 1.46810 * 119.57334 * 359.72633 * 9 7 6 11 11 C 1.53920 * 107.35139 * 127.89774 * 10 9 7 12 12 C 1.52735 * 108.35362 * 58.31249 * 11 10 9 13 13 C 1.53011 * 110.79980 * 296.10028 * 12 11 10 14 14 H 1.08997 * 111.38779 * 291.24015 * 13 12 11 15 15 C 1.45115 * 119.57824 * 180.02562 * 9 7 6 16 16 H 1.08999 * 109.96884 * 348.05709 * 15 9 7 17 17 C 1.54415 * 111.60759 * 111.34423 * 15 9 7 18 18 C 1.54574 * 102.44669 * 156.57814 * 17 15 9 19 19 N 1.47117 * 107.25352 * 338.33283 * 18 17 15 20 20 C 1.36935 * 125.76892 * 177.38143 * 19 18 17 21 21 H 1.07998 * 120.00268 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99810 * 0.02601 * 20 19 18 23 23 N 1.31620 * 119.99923 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99898 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47572 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46958 * 119.99527 * 24 22 20 27 27 H 1.48497 * 109.47401 * 239.99245 * 24 22 20 28 28 C 1.39525 * 118.88139 * 359.47725 * 6 4 3 29 29 C 1.50694 * 119.71816 * 180.25306 * 28 6 4 30 30 N 1.31696 * 120.56418 * 0.53416 * 28 6 4 31 31 H 1.09002 * 109.47236 * 89.99364 * 1 2 3 32 32 H 1.08994 * 109.46985 * 210.00195 * 1 2 3 33 33 H 1.09003 * 109.46571 * 329.99713 * 1 2 3 34 34 H 1.08005 * 120.34980 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47152 * 90.00183 * 5 4 3 36 36 H 1.09001 * 109.46980 * 330.00283 * 5 4 3 37 37 H 1.09004 * 109.47113 * 210.00264 * 5 4 3 38 38 H 1.08996 * 109.83487 * 247.47249 * 10 9 7 39 39 H 1.08995 * 109.83235 * 8.43427 * 10 9 7 40 40 H 1.09001 * 109.79000 * 298.59179 * 11 10 9 41 41 H 1.09008 * 109.75223 * 178.01302 * 11 10 9 42 42 H 1.08998 * 109.20889 * 175.76428 * 12 11 10 43 43 H 1.09000 * 109.21281 * 56.44396 * 12 11 10 44 44 H 1.08995 * 110.81174 * 274.81200 * 17 15 9 45 45 H 1.08999 * 110.81628 * 38.34058 * 17 15 9 46 46 H 1.08999 * 109.88485 * 218.91984 * 18 17 15 47 47 H 1.09000 * 109.88342 * 97.74475 * 18 17 15 48 48 H 0.96994 * 119.99947 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.47155 * 270.27402 * 29 28 6 50 50 H 1.08998 * 109.47488 * 30.28263 * 29 28 6 51 51 H 1.09005 * 109.47202 * 150.27878 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4924 0.0000 6 6 4.2312 -0.0340 -0.0045 7 6 5.7083 -0.0967 -0.0102 8 8 6.3196 -0.1245 1.0400 9 7 6.3771 -0.1230 -1.1800 10 6 5.6292 -0.0951 -2.4430 11 6 6.2155 1.0422 -3.2987 12 6 7.7035 0.7687 -3.5078 13 6 8.4553 0.8065 -2.1757 14 1 8.4904 1.8166 -1.7676 15 6 7.8269 -0.1851 -1.1751 16 1 8.2044 0.0089 -0.1711 17 6 8.3397 -1.5444 -1.6983 18 6 9.7678 -1.1993 -2.1786 19 7 9.8077 0.2511 -2.4220 20 6 10.9082 0.9675 -2.8104 21 1 10.8321 2.0340 -2.9628 22 6 12.1216 0.3229 -3.0083 23 7 12.2145 -0.9767 -2.8221 24 14 13.6230 1.3003 -3.5375 25 1 13.2576 2.7329 -3.6756 26 1 14.6911 1.1588 -2.5155 27 1 14.1141 0.7861 -4.8411 28 6 3.4716 -1.2043 0.0013 29 6 4.1627 -2.5435 0.0019 30 7 2.1558 -1.1487 0.0008 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3632 0.8900 0.5139 34 1 1.6444 2.1382 -0.0004 35 1 4.5344 2.8044 1.0275 36 1 3.7721 3.2620 -0.5146 37 1 5.2977 2.3449 -0.5134 38 1 5.7422 -1.0474 -2.9609 39 1 4.5747 0.0959 -2.2442 40 1 6.0867 1.9947 -2.7847 41 1 5.7098 1.0753 -4.2638 42 1 8.1170 1.5253 -4.1746 43 1 7.8271 -0.2146 -3.9617 44 1 8.3685 -2.2821 -0.8965 45 1 7.7266 -1.8963 -2.5280 46 1 9.9886 -1.7363 -3.1011 47 1 10.4923 -1.4662 -1.4092 48 1 13.0624 -1.4271 -2.9600 49 1 4.3296 -2.8666 -1.0257 50 1 5.1199 -2.4582 0.5161 51 1 3.5382 -3.2745 0.5156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049600790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:44 Heat of formation + Delta-G solvation = 21.533351 kcal Electronic energy + Delta-G solvation = -31715.651699 eV Core-core repulsion = 27808.194727 eV Total energy + Delta-G solvation = -3907.456972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22081 -39.82119 -37.91006 -35.30430 -34.41343 -33.91621 -32.42138 -32.16899 -29.48285 -29.05098 -28.37730 -27.97894 -27.40056 -24.73218 -24.30481 -22.60736 -22.02884 -21.35713 -20.37244 -19.98995 -18.28487 -17.48102 -17.19378 -16.90562 -16.15105 -15.22060 -15.05132 -14.78594 -14.58612 -14.46693 -14.26760 -13.86305 -13.62523 -13.49850 -13.46761 -13.39408 -13.18020 -12.98825 -12.85125 -12.51972 -12.46474 -12.22427 -12.11775 -11.99807 -11.91565 -11.82928 -11.41276 -11.05667 -11.01704 -10.82124 -10.67213 -10.54391 -10.25927 -10.06958 -9.95026 -9.67666 -9.66179 -9.63362 -9.44450 -8.92399 -8.64656 -8.33719 -6.88397 -5.73061 -3.07260 0.70495 0.98713 2.59457 3.06257 3.38742 3.41853 3.44575 3.46750 3.92190 4.31071 4.33660 4.45143 4.47439 4.81255 4.92913 5.05478 5.10109 5.15047 5.16914 5.25223 5.26807 5.30662 5.34219 5.36475 5.43675 5.46106 5.47978 5.54863 5.59567 5.62620 5.68490 5.78441 5.83077 5.89768 5.92677 5.98202 6.01217 6.08519 6.17619 6.26904 6.32923 6.43068 6.48031 6.55880 6.69454 6.92805 7.02506 7.49769 7.54045 7.59948 7.75270 7.80725 8.19718 8.24834 9.18560 9.78146 10.43778 11.38199 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.002913 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.543638 B = 9608.640026 C = 9985.965123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.124 4.124 6 C -0.176 4.176 7 C 0.566 3.434 8 O -0.532 6.532 9 N -0.582 5.582 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.130 4.130 13 C 0.157 3.843 14 H 0.059 0.941 15 C 0.129 3.871 16 H 0.103 0.897 17 C -0.151 4.151 18 C 0.181 3.819 19 N -0.597 5.597 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.172 3.828 29 C -0.111 4.111 30 N -0.488 5.488 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.052 0.948 48 H 0.252 0.748 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 2.478 2.359 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.203 4.203 4 C -0.010 4.010 5 C -0.181 4.181 6 C -0.181 4.181 7 C 0.352 3.648 8 O -0.409 6.409 9 N -0.313 5.313 10 C -0.014 4.014 11 C -0.170 4.170 12 C -0.170 4.170 13 C 0.049 3.951 14 H 0.077 0.923 15 C 0.025 3.975 16 H 0.121 0.879 17 C -0.191 4.191 18 C 0.056 3.944 19 N -0.322 5.322 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.034 3.966 29 C -0.169 4.169 30 N -0.199 5.199 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.098 0.902 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.994 1.646 2.857 23.230 hybrid contribution 1.281 1.227 -0.427 1.825 sum -21.713 2.873 2.430 22.037 Atomic orbital electron populations 1.20736 0.88597 1.03572 1.03217 1.21381 0.97051 0.88103 0.92939 1.21727 0.93599 0.99458 1.05498 1.20319 0.93746 0.94481 0.92419 1.20941 1.00235 0.93262 1.03641 1.20660 0.94730 0.94585 1.08157 1.18083 0.86216 0.76440 0.84049 1.90805 1.68883 1.49926 1.31252 1.47638 1.07064 1.71277 1.05349 1.21900 0.95146 0.99735 0.84656 1.22002 0.97986 0.97812 0.99211 1.22125 0.92363 1.02343 1.00148 1.21341 0.86531 0.95305 0.91960 0.92289 1.21865 0.76925 0.97144 1.01579 0.87941 1.23118 1.00046 0.95967 0.99927 1.21177 0.89438 0.84336 0.99444 1.44711 1.04055 1.03582 1.79823 1.19068 0.86450 0.91362 1.38540 0.90401 1.24798 0.97712 0.95939 1.01900 1.69962 1.24570 1.07164 1.55076 0.86055 0.83047 0.78876 0.77828 1.20544 1.21762 1.21802 1.21279 0.88813 0.94632 0.91925 1.20826 1.00287 0.92118 1.03634 1.67370 1.08799 1.29110 1.14629 0.90193 0.90335 0.90606 0.84375 0.89819 0.90407 0.90544 0.91067 0.90607 0.91866 0.91328 0.92068 0.91771 0.91952 0.92196 0.94006 0.92987 0.93768 0.89790 0.90196 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.16 36.01 0.37 -0.32 16 2 C 0.14 1.45 6.78 -82.51 -0.56 0.89 16 3 C -0.18 -1.74 9.43 -39.50 -0.37 -2.11 16 4 C 0.00 -0.02 5.75 -103.91 -0.60 -0.62 16 5 C -0.12 -1.25 9.70 36.01 0.35 -0.90 16 6 C -0.18 -2.37 3.58 -104.82 -0.38 -2.75 16 7 C 0.57 8.97 4.19 -12.33 -0.05 8.91 16 8 O -0.53 -10.41 16.42 5.33 0.09 -10.32 16 9 N -0.58 -8.81 2.73 -165.82 -0.45 -9.26 16 10 C 0.11 1.36 6.09 -3.39 -0.02 1.34 16 11 C -0.13 -1.67 6.12 -26.39 -0.16 -1.83 16 12 C -0.13 -2.18 5.10 -26.86 -0.14 -2.32 16 13 C 0.16 3.10 3.60 -66.30 -0.24 2.86 16 14 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.13 2.36 3.10 -67.28 -0.21 2.15 16 16 H 0.10 2.14 6.96 -51.93 -0.36 1.78 16 17 C -0.15 -2.84 6.08 -25.16 -0.15 -2.99 16 18 C 0.18 4.29 5.19 -2.88 -0.01 4.28 16 19 N -0.60 -14.61 2.91 -162.13 -0.47 -15.08 16 20 C -0.23 -6.11 10.29 -15.06 -0.15 -6.27 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.65 10.33 55.49 0.57 -26.07 16 24 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.17 2.23 6.82 -82.17 -0.56 1.66 16 29 C -0.11 -1.29 9.78 36.00 0.35 -0.94 16 30 N -0.49 -6.02 10.17 -5.42 -0.06 -6.08 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.08 0.89 7.18 -51.93 -0.37 0.52 16 38 H 0.07 0.87 7.51 -51.93 -0.39 0.48 16 39 H 0.08 0.86 6.10 -51.93 -0.32 0.55 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.03 6.78 -51.93 -0.35 0.68 16 46 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 47 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.04 7.08 -51.93 -0.37 0.67 16 51 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -31.92 396.10 -10.35 -42.26 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.34 Total: 0.95 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.63 Total: 0.76 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.41 Total: -56.50 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.92 -10.35 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049600790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.798 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds