Wall clock time and date at job start Wed Apr 1 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 119.45782 * 2 1 4 4 C 1.38359 * 119.30106 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.85872 * 180.02562 * 4 3 2 6 6 C 1.40028 * 118.28762 * 0.02562 * 4 3 2 7 7 C 1.47842 * 120.55734 * 179.97438 * 6 4 3 8 8 O 1.21549 * 119.99777 * 90.00533 * 7 6 4 9 9 N 1.34774 * 120.00152 * 269.99920 * 7 6 4 10 10 C 1.46804 * 119.57935 * 0.02803 * 9 7 6 11 11 C 1.50943 * 108.37128 * 230.28647 * 10 9 7 12 12 C 1.52740 * 110.32896 * 304.22425 * 11 10 9 13 13 C 1.53014 * 110.76671 * 61.67713 * 12 11 10 14 14 H 1.08998 * 111.38963 * 69.74706 * 13 12 11 15 15 C 1.45115 * 119.57670 * 180.02562 * 9 7 6 16 16 H 1.09000 * 109.97605 * 11.95101 * 15 9 7 17 17 C 1.54422 * 112.30140 * 249.10219 * 15 9 7 18 18 C 1.54572 * 102.44865 * 203.07960 * 17 15 9 19 19 N 1.48210 * 107.11242 * 191.95705 * 13 12 11 20 20 C 1.36944 * 125.76220 * 270.84631 * 19 13 12 21 21 H 1.08002 * 120.00142 * 359.97438 * 20 19 13 22 22 C 1.38811 * 119.99747 * 179.97438 * 20 19 13 23 23 N 1.31619 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99829 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47177 * 60.00375 * 24 22 20 26 26 H 1.48505 * 109.47104 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46876 * 299.99962 * 24 22 20 28 28 C 1.39516 * 118.88138 * 0.27596 * 6 4 3 29 29 C 1.50703 * 119.71517 * 179.72459 * 28 6 4 30 30 N 1.31700 * 120.56955 * 359.45094 * 28 6 4 31 31 H 1.09008 * 109.47039 * 90.00390 * 1 2 3 32 32 H 1.09001 * 109.47355 * 209.99444 * 1 2 3 33 33 H 1.09001 * 109.47332 * 330.00327 * 1 2 3 34 34 H 1.07994 * 120.35187 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46941 * 269.97822 * 5 4 3 36 36 H 1.09005 * 109.47082 * 29.97527 * 5 4 3 37 37 H 1.08997 * 109.47743 * 149.97804 * 5 4 3 38 38 H 1.09003 * 109.82928 * 351.55455 * 10 9 7 39 39 H 1.08992 * 109.83418 * 112.44633 * 10 9 7 40 40 H 1.08996 * 110.36581 * 182.89714 * 11 10 9 41 41 H 1.08994 * 107.00795 * 63.44970 * 11 10 9 42 42 H 1.09002 * 109.21343 * 301.35506 * 12 11 10 43 43 H 1.08999 * 109.20955 * 181.98972 * 12 11 10 44 44 H 1.09000 * 110.81243 * 321.32020 * 17 15 9 45 45 H 1.09003 * 110.81546 * 84.84347 * 17 15 9 46 46 H 1.09003 * 109.88902 * 141.08595 * 18 17 15 47 47 H 1.09000 * 109.88760 * 262.10804 * 18 17 15 48 48 H 0.97003 * 119.99676 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.46800 * 90.00280 * 29 28 6 50 50 H 1.09010 * 109.47059 * 209.99620 * 29 28 6 51 51 H 1.08996 * 109.47120 * 329.99756 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4923 0.0011 6 6 4.2312 -0.0340 0.0005 7 6 5.7083 -0.0966 0.0005 8 8 6.3155 -0.1225 1.0532 9 7 6.3816 -0.1251 -1.1667 10 6 5.6390 -0.0931 -2.4326 11 6 6.1398 -1.2172 -3.3066 12 6 7.6512 -1.1077 -3.4978 13 6 8.3777 -1.2254 -2.1563 14 1 8.3121 -2.2371 -1.7561 15 6 7.8314 -0.1871 -1.1559 16 1 8.1869 -0.4149 -0.1510 17 6 8.4776 1.1213 -1.6609 18 6 9.8732 0.6460 -2.1253 19 7 9.7851 -0.8213 -2.3856 20 6 10.8058 -1.6537 -2.7607 21 1 10.6159 -2.7058 -2.9143 22 6 12.0845 -1.1453 -2.9434 23 7 12.3160 0.1367 -2.7557 24 14 13.4769 -2.2808 -3.4543 25 1 13.1504 -2.9080 -4.7601 26 1 14.7327 -1.4983 -3.5808 27 1 13.6548 -3.3388 -2.4276 28 6 3.4716 -1.2043 -0.0059 29 6 4.1628 -2.5435 -0.0124 30 7 2.1558 -1.1487 -0.0010 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6443 2.1381 -0.0004 35 1 4.5354 2.8037 -1.0264 36 1 3.7715 3.2623 0.5146 37 1 5.2971 2.3453 0.5156 38 1 4.5716 -0.1982 -2.2379 39 1 5.8297 0.8474 -2.9495 40 1 5.6449 -1.1923 -4.2774 41 1 5.9018 -2.1495 -2.7944 42 1 7.8867 -0.1443 -3.9500 43 1 7.9878 -1.9061 -4.1591 44 1 7.9121 1.5356 -2.4955 45 1 8.5650 1.8473 -0.8525 46 1 10.1567 1.1664 -3.0401 47 1 10.6095 0.8399 -1.3453 48 1 13.2096 0.4919 -2.8830 49 1 4.3287 -2.8716 1.0138 50 1 3.5387 -3.2719 -0.5303 51 1 5.1205 -2.4556 -0.5252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049600791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:48 Heat of formation + Delta-G solvation = 21.857122 kcal Electronic energy + Delta-G solvation = -31700.824147 eV Core-core repulsion = 27793.381215 eV Total energy + Delta-G solvation = -3907.442933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23475 -39.82565 -37.88476 -35.29570 -34.42832 -33.90630 -32.48528 -32.16301 -29.49704 -29.05373 -28.40590 -27.98583 -27.41014 -24.76067 -24.29812 -22.58914 -21.98828 -21.36297 -20.39844 -19.98694 -18.28122 -17.45432 -17.21584 -16.86896 -16.16700 -15.24198 -15.06290 -14.75881 -14.65607 -14.41615 -14.26965 -13.89224 -13.65405 -13.54277 -13.47594 -13.36400 -13.18813 -13.04770 -12.81204 -12.49073 -12.45098 -12.24487 -12.11596 -11.98111 -11.90343 -11.84012 -11.39468 -11.09263 -10.95809 -10.80131 -10.64811 -10.55273 -10.24894 -10.13088 -9.96526 -9.69663 -9.63186 -9.60037 -9.45637 -8.92349 -8.66831 -8.35062 -6.87838 -5.73085 -3.06044 0.70117 0.98239 2.58747 3.04603 3.40407 3.41704 3.45130 3.45945 3.91798 4.30462 4.33222 4.44901 4.47599 4.81099 4.92220 5.04424 5.11340 5.14114 5.16670 5.26586 5.28504 5.30144 5.32921 5.34801 5.42833 5.48948 5.50418 5.52949 5.59950 5.61991 5.69903 5.78719 5.82121 5.89490 5.91237 5.99181 6.01327 6.09770 6.16388 6.27626 6.31033 6.42821 6.45941 6.56162 6.70821 6.92787 7.02998 7.48370 7.50495 7.55407 7.75003 7.77256 8.16609 8.23546 9.15347 9.77421 10.45492 11.39906 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.002913 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.158464 B = 9609.022150 C = 9994.297166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.124 4.124 6 C -0.176 4.176 7 C 0.567 3.433 8 O -0.531 6.531 9 N -0.581 5.581 10 C 0.110 3.890 11 C -0.134 4.134 12 C -0.127 4.127 13 C 0.155 3.845 14 H 0.058 0.942 15 C 0.129 3.871 16 H 0.102 0.898 17 C -0.149 4.149 18 C 0.178 3.822 19 N -0.598 5.598 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.173 3.827 29 C -0.112 4.112 30 N -0.488 5.488 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.196 3.146 2.153 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.203 4.203 4 C -0.010 4.010 5 C -0.181 4.181 6 C -0.181 4.181 7 C 0.353 3.647 8 O -0.408 6.408 9 N -0.312 5.312 10 C -0.013 4.013 11 C -0.173 4.173 12 C -0.167 4.167 13 C 0.046 3.954 14 H 0.076 0.924 15 C 0.025 3.975 16 H 0.120 0.880 17 C -0.189 4.189 18 C 0.053 3.947 19 N -0.323 5.323 20 C -0.352 4.352 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.034 3.966 29 C -0.169 4.169 30 N -0.199 5.199 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.019 2.391 2.655 23.295 hybrid contribution 1.227 0.338 -0.396 1.333 sum -21.792 2.730 2.259 22.078 Atomic orbital electron populations 1.20739 0.88591 1.03577 1.03223 1.21384 0.97057 0.88103 0.92918 1.21725 0.93600 0.99456 1.05504 1.20320 0.93751 0.94477 0.92481 1.20925 1.00447 0.93263 1.03433 1.20657 0.94707 0.94593 1.08186 1.18073 0.86198 0.76428 0.84039 1.90807 1.69161 1.49831 1.30979 1.47601 1.06990 1.71327 1.05329 1.21283 0.95414 1.00065 0.84501 1.21483 0.98351 0.98393 0.99078 1.22086 0.91839 1.02579 1.00183 1.21313 0.86512 0.95611 0.91938 0.92381 1.21798 0.76863 0.97203 1.01684 0.87991 1.23074 0.99449 0.96376 0.99957 1.21513 0.90011 0.83683 0.99469 1.45156 1.02401 1.04411 1.80287 1.18961 0.86830 0.90418 1.39020 0.90401 1.24780 0.97353 0.96213 1.01978 1.69913 1.20706 1.11161 1.55103 0.86211 0.81689 0.79534 0.78388 1.21214 1.21643 1.21171 1.21285 0.88817 0.94629 0.91851 1.20842 1.00030 0.92125 1.03878 1.67375 1.08783 1.29098 1.14617 0.90184 0.90329 0.90608 0.84378 0.89885 0.90449 0.90451 0.90403 0.91628 0.91046 0.92174 0.91817 0.91936 0.92199 0.91942 0.93868 0.92962 0.93677 0.89687 0.89815 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.16 36.01 0.37 -0.32 16 2 C 0.14 1.45 6.78 -82.51 -0.56 0.89 16 3 C -0.18 -1.73 9.43 -39.50 -0.37 -2.10 16 4 C 0.00 -0.03 5.95 -103.91 -0.62 -0.64 16 5 C -0.12 -1.22 9.69 36.00 0.35 -0.87 16 6 C -0.18 -2.37 3.60 -104.82 -0.38 -2.75 16 7 C 0.57 8.98 4.19 -12.33 -0.05 8.93 16 8 O -0.53 -10.40 16.43 5.32 0.09 -10.32 16 9 N -0.58 -8.80 2.77 -167.65 -0.46 -9.27 16 10 C 0.11 1.38 6.01 -4.91 -0.03 1.35 16 11 C -0.13 -1.73 5.93 -27.90 -0.17 -1.90 16 12 C -0.13 -2.15 5.17 -26.86 -0.14 -2.29 16 13 C 0.16 3.07 3.53 -66.36 -0.23 2.84 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.13 2.35 3.05 -67.31 -0.21 2.15 16 16 H 0.10 2.13 6.96 -51.93 -0.36 1.77 16 17 C -0.15 -2.77 6.11 -25.16 -0.15 -2.93 16 18 C 0.18 4.19 5.28 -1.67 -0.01 4.18 16 19 N -0.60 -14.66 2.99 -160.44 -0.48 -15.14 16 20 C -0.22 -6.08 10.31 -15.06 -0.16 -6.24 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.73 10.52 55.49 0.58 -26.15 16 24 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.17 2.24 6.59 -82.17 -0.54 1.70 16 29 C -0.11 -1.31 9.79 36.01 0.35 -0.96 16 30 N -0.49 -6.02 10.17 -5.42 -0.06 -6.08 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 38 H 0.08 0.89 6.08 -51.93 -0.32 0.58 16 39 H 0.07 0.79 7.61 -51.93 -0.40 0.39 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 42 H 0.06 1.16 7.15 -51.93 -0.37 0.79 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.02 6.95 -51.93 -0.36 0.66 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.04 1.11 7.68 -51.93 -0.40 0.71 16 47 H 0.05 1.38 7.39 -51.93 -0.38 1.00 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 51 H 0.08 0.99 7.07 -51.93 -0.37 0.62 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -31.98 396.68 -10.38 -42.36 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.36 Total: 0.96 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.64 Total: 0.74 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.42 Total: -56.64 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.98 -10.38 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049600791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.215 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds