Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 119.45782 * 2 1 4 4 C 1.38359 * 119.30106 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.85872 * 180.02562 * 4 3 2 6 6 C 1.40028 * 118.28762 * 0.02562 * 4 3 2 7 7 C 1.47842 * 120.55734 * 179.97438 * 6 4 3 8 8 O 1.21549 * 119.99777 * 90.00533 * 7 6 4 9 9 N 1.34774 * 120.00152 * 269.99920 * 7 6 4 10 10 C 1.46804 * 119.57935 * 0.02803 * 9 7 6 11 11 C 1.50943 * 108.37128 * 230.28647 * 10 9 7 12 12 C 1.52740 * 110.32896 * 304.22425 * 11 10 9 13 13 C 1.53014 * 110.76671 * 61.67713 * 12 11 10 14 14 H 1.08998 * 111.38963 * 69.74706 * 13 12 11 15 15 C 1.45115 * 119.57670 * 180.02562 * 9 7 6 16 16 H 1.09000 * 109.97605 * 11.95101 * 15 9 7 17 17 C 1.54422 * 112.30140 * 249.10219 * 15 9 7 18 18 C 1.54572 * 102.44865 * 203.07960 * 17 15 9 19 19 N 1.48210 * 107.11242 * 191.95705 * 13 12 11 20 20 C 1.36944 * 125.76220 * 270.84631 * 19 13 12 21 21 H 1.08002 * 120.00142 * 359.97438 * 20 19 13 22 22 C 1.38811 * 119.99747 * 179.97438 * 20 19 13 23 23 N 1.31619 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99829 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47177 * 60.00375 * 24 22 20 26 26 H 1.48505 * 109.47104 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46876 * 299.99962 * 24 22 20 28 28 C 1.39516 * 118.88138 * 0.27596 * 6 4 3 29 29 C 1.50703 * 119.71517 * 179.72459 * 28 6 4 30 30 N 1.31700 * 120.56955 * 359.45094 * 28 6 4 31 31 H 1.09008 * 109.47039 * 90.00390 * 1 2 3 32 32 H 1.09001 * 109.47355 * 209.99444 * 1 2 3 33 33 H 1.09001 * 109.47332 * 330.00327 * 1 2 3 34 34 H 1.07994 * 120.35187 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46941 * 269.97822 * 5 4 3 36 36 H 1.09005 * 109.47082 * 29.97527 * 5 4 3 37 37 H 1.08997 * 109.47743 * 149.97804 * 5 4 3 38 38 H 1.09003 * 109.82928 * 351.55455 * 10 9 7 39 39 H 1.08992 * 109.83418 * 112.44633 * 10 9 7 40 40 H 1.08996 * 110.36581 * 182.89714 * 11 10 9 41 41 H 1.08994 * 107.00795 * 63.44970 * 11 10 9 42 42 H 1.09002 * 109.21343 * 301.35506 * 12 11 10 43 43 H 1.08999 * 109.20955 * 181.98972 * 12 11 10 44 44 H 1.09000 * 110.81243 * 321.32020 * 17 15 9 45 45 H 1.09003 * 110.81546 * 84.84347 * 17 15 9 46 46 H 1.09003 * 109.88902 * 141.08595 * 18 17 15 47 47 H 1.09000 * 109.88760 * 262.10804 * 18 17 15 48 48 H 0.97003 * 119.99676 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.46800 * 90.00280 * 29 28 6 50 50 H 1.09010 * 109.47059 * 209.99620 * 29 28 6 51 51 H 1.08996 * 109.47120 * 329.99756 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4923 0.0011 6 6 4.2312 -0.0340 0.0005 7 6 5.7083 -0.0966 0.0005 8 8 6.3155 -0.1225 1.0532 9 7 6.3816 -0.1251 -1.1667 10 6 5.6390 -0.0931 -2.4326 11 6 6.1398 -1.2172 -3.3066 12 6 7.6512 -1.1077 -3.4978 13 6 8.3777 -1.2254 -2.1563 14 1 8.3121 -2.2371 -1.7561 15 6 7.8314 -0.1871 -1.1559 16 1 8.1869 -0.4149 -0.1510 17 6 8.4776 1.1213 -1.6609 18 6 9.8732 0.6460 -2.1253 19 7 9.7851 -0.8213 -2.3856 20 6 10.8058 -1.6537 -2.7607 21 1 10.6159 -2.7058 -2.9143 22 6 12.0845 -1.1453 -2.9434 23 7 12.3160 0.1367 -2.7557 24 14 13.4769 -2.2808 -3.4543 25 1 13.1504 -2.9080 -4.7601 26 1 14.7327 -1.4983 -3.5808 27 1 13.6548 -3.3388 -2.4276 28 6 3.4716 -1.2043 -0.0059 29 6 4.1628 -2.5435 -0.0124 30 7 2.1558 -1.1487 -0.0010 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6443 2.1381 -0.0004 35 1 4.5354 2.8037 -1.0264 36 1 3.7715 3.2623 0.5146 37 1 5.2971 2.3453 0.5156 38 1 4.5716 -0.1982 -2.2379 39 1 5.8297 0.8474 -2.9495 40 1 5.6449 -1.1923 -4.2774 41 1 5.9018 -2.1495 -2.7944 42 1 7.8867 -0.1443 -3.9500 43 1 7.9878 -1.9061 -4.1591 44 1 7.9121 1.5356 -2.4955 45 1 8.5650 1.8473 -0.8525 46 1 10.1567 1.1664 -3.0401 47 1 10.6095 0.8399 -1.3453 48 1 13.2096 0.4919 -2.8830 49 1 4.3287 -2.8716 1.0138 50 1 3.5387 -3.2719 -0.5303 51 1 5.1205 -2.4556 -0.5252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049600791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = 3.485359 kcal Electronic energy + Delta-G solvation = -31701.620807 eV Core-core repulsion = 27793.381215 eV Total energy + Delta-G solvation = -3908.239592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.30791 -40.99598 -39.31423 -36.81489 -35.27739 -34.83377 -34.05938 -33.77701 -30.99069 -30.15544 -29.85797 -28.89288 -28.29341 -26.38572 -25.89982 -23.61297 -23.28300 -22.24921 -22.00372 -21.36254 -19.64636 -18.82896 -18.60530 -18.09870 -17.45437 -16.77398 -16.19972 -16.08340 -15.86320 -15.71642 -15.55719 -15.13988 -15.02903 -14.69158 -14.39107 -14.23915 -14.11514 -14.06954 -13.92444 -13.81282 -13.66896 -13.51104 -13.18169 -13.12743 -12.98690 -12.85157 -12.68803 -12.66212 -12.59534 -12.38402 -12.33507 -12.11598 -11.95811 -11.71174 -11.49554 -11.24530 -11.21682 -10.73680 -10.53682 -10.42300 -9.78039 -9.71343 -8.90068 -7.85317 -5.19550 -0.15678 0.15781 1.35965 1.45313 1.48520 1.54311 1.81252 2.49422 2.57440 3.11647 3.30395 3.35387 3.48150 3.54466 3.62280 3.83019 3.88754 3.96214 4.01622 4.07344 4.13844 4.32334 4.32672 4.34519 4.48417 4.51828 4.55152 4.56243 4.57559 4.63054 4.64358 4.70265 4.73481 4.80544 4.85783 4.93810 4.95550 5.01284 5.08000 5.12743 5.17260 5.20144 5.23817 5.31911 5.37537 5.51939 5.55491 5.61261 5.67398 5.70476 6.14629 6.27011 6.90903 6.98298 7.05281 7.71990 8.41327 9.26575 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.002913 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.158464 B = 9609.022150 C = 9994.297166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.173 4.173 4 C -0.007 4.007 5 C -0.122 4.122 6 C -0.198 4.198 7 C 0.573 3.427 8 O -0.578 6.578 9 N -0.576 5.576 10 C 0.110 3.890 11 C -0.124 4.124 12 C -0.115 4.115 13 C 0.151 3.849 14 H 0.048 0.952 15 C 0.145 3.855 16 H 0.069 0.931 17 C -0.130 4.130 18 C 0.189 3.811 19 N -0.618 5.618 20 C -0.233 4.233 21 H 0.082 0.918 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.976 3.024 25 H -0.275 1.275 26 H -0.296 1.296 27 H -0.281 1.281 28 C 0.163 3.837 29 C -0.109 4.109 30 N -0.504 5.504 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.016 0.984 47 H 0.011 0.989 48 H 0.246 0.754 49 H 0.079 0.921 50 H 0.098 0.902 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.109 3.678 1.057 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.192 4.192 4 C -0.015 4.015 5 C -0.179 4.179 6 C -0.203 4.203 7 C 0.362 3.638 8 O -0.458 6.458 9 N -0.306 5.306 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.154 4.154 13 C 0.044 3.956 14 H 0.066 0.934 15 C 0.040 3.960 16 H 0.088 0.912 17 C -0.169 4.169 18 C 0.064 3.936 19 N -0.344 5.344 20 C -0.361 4.361 21 H 0.100 0.900 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.804 3.196 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.207 1.207 28 C 0.024 3.976 29 C -0.167 4.167 30 N -0.216 5.216 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.193 0.807 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.030 0.970 48 H 0.056 0.944 49 H 0.097 0.903 50 H 0.117 0.883 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.997 2.901 1.535 27.196 hybrid contribution 2.328 0.164 -0.001 2.333 sum -24.669 3.065 1.534 24.906 Atomic orbital electron populations 1.20862 0.85918 1.04647 1.04480 1.22076 0.98812 0.87760 0.91151 1.22089 0.92675 1.00782 1.03642 1.20577 0.94825 0.94022 0.92051 1.20957 0.99244 0.93391 1.04270 1.20474 0.92629 0.96046 1.11147 1.18464 0.87339 0.74866 0.83176 1.90777 1.70457 1.51873 1.32688 1.47556 1.05461 1.70979 1.06642 1.21501 0.96099 1.00619 0.82877 1.21424 0.95058 0.98785 1.00980 1.21847 0.94610 1.01606 0.97377 1.21496 0.84733 0.95394 0.94017 0.93431 1.21286 0.79120 0.96297 0.99346 0.91236 1.22882 0.96576 0.96557 1.00881 1.21224 0.92011 0.83528 0.96862 1.45396 1.04061 1.04682 1.80249 1.19329 0.87780 0.91044 1.37982 0.90014 1.25591 0.99729 0.97641 1.02878 1.70127 1.20575 1.12764 1.56599 0.85188 0.78393 0.77638 0.78332 1.20089 1.22190 1.20692 1.21326 0.89322 0.94534 0.92371 1.20810 0.99684 0.92591 1.03573 1.67443 1.08227 1.30461 1.15441 0.88640 0.90750 0.88106 0.80682 0.88461 0.87828 0.93430 0.88341 0.90130 0.87737 0.91866 0.92765 0.92962 0.89695 0.91197 0.96571 0.97016 0.94435 0.90280 0.88307 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.16 71.24 0.72 -0.19 16 2 C 0.14 2.33 6.78 42.57 0.29 2.61 16 3 C -0.17 -2.54 9.43 22.32 0.21 -2.33 16 4 C -0.01 -0.14 5.95 -19.40 -0.12 -0.25 16 5 C -0.12 -2.09 9.69 71.23 0.69 -1.40 16 6 C -0.20 -5.06 3.60 -19.99 -0.07 -5.13 16 7 C 0.57 18.20 4.19 86.79 0.36 18.56 16 8 O -0.58 -23.58 16.43 -3.87 -0.06 -23.64 16 9 N -0.58 -17.14 2.77 -802.59 -2.23 -19.37 16 10 C 0.11 2.47 6.01 85.65 0.51 2.98 16 11 C -0.12 -2.88 5.93 29.84 0.18 -2.70 16 12 C -0.11 -3.80 5.17 30.51 0.16 -3.64 16 13 C 0.15 6.13 3.53 45.07 0.16 6.29 16 14 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 15 C 0.15 5.44 3.05 46.13 0.14 5.58 16 16 H 0.07 3.08 6.96 -2.39 -0.02 3.07 16 17 C -0.13 -4.90 6.11 31.61 0.19 -4.71 16 18 C 0.19 9.35 5.28 86.37 0.46 9.81 16 19 N -0.62 -31.60 2.99 -661.51 -1.98 -33.58 16 20 C -0.23 -13.02 10.31 84.03 0.87 -12.16 16 21 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 22 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 23 N -0.95 -57.69 10.52 21.65 0.23 -57.46 16 24 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 C 0.16 4.00 6.59 42.89 0.28 4.28 16 29 C -0.11 -2.53 9.79 71.24 0.70 -1.83 16 30 N -0.50 -11.27 10.17 -171.05 -1.74 -13.01 16 31 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16 34 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.20 8.10 -2.38 -0.02 1.18 16 37 H 0.05 1.12 7.19 -2.39 -0.02 1.10 16 38 H 0.10 1.92 6.08 -2.39 -0.01 1.90 16 39 H 0.08 1.63 7.61 -2.39 -0.02 1.61 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 42 H 0.05 1.91 7.15 -2.39 -0.02 1.89 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 2.79 6.95 -2.39 -0.02 2.77 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.02 0.87 7.68 -2.39 -0.02 0.85 16 47 H 0.01 0.66 7.39 -2.39 -0.02 0.64 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.07 1.66 7.07 -2.39 -0.02 1.64 16 Total: -1.00 -74.57 396.68 3.37 -71.20 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.92 Total: 15.09 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.20 Total: 12.50 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -5.71 Total: -123.42 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.06 Total: -23.64 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -74.57 3.37 -71.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049600791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.688 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds