Wall clock time and date at job start Wed Apr 1 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38346 * 119.46040 * 2 1 4 4 C 1.38357 * 119.30411 * 179.79431 * 3 2 1 5 5 C 1.50697 * 120.85845 * 180.22161 * 4 3 2 6 6 C 1.40030 * 118.28867 * 0.47219 * 4 3 2 7 7 C 1.47841 * 120.56037 * 179.77234 * 6 4 3 8 8 O 1.21550 * 120.00014 * 269.97597 * 7 6 4 9 9 N 1.34777 * 119.99726 * 89.97670 * 7 6 4 10 10 C 1.47856 * 122.22891 * 359.97438 * 9 7 6 11 11 C 1.52718 * 111.05228 * 127.51048 * 10 9 7 12 12 C 1.53869 * 111.52550 * 48.54140 * 11 10 9 13 13 C 1.51079 * 107.33937 * 303.06376 * 12 11 10 14 14 H 1.09000 * 108.73871 * 309.15584 * 13 12 11 15 15 C 1.45726 * 122.22338 * 179.71254 * 9 7 6 16 16 H 1.08995 * 111.06874 * 119.47805 * 15 9 7 17 17 C 1.53337 * 116.43308 * 350.62969 * 15 9 7 18 18 C 1.55464 * 101.58200 * 206.93132 * 17 15 9 19 19 N 1.45024 * 119.19257 * 183.88669 * 13 12 11 20 20 C 1.36938 * 126.56039 * 28.81340 * 19 13 12 21 21 H 1.07992 * 120.00290 * 0.02562 * 20 19 13 22 22 C 1.38819 * 119.99696 * 179.97438 * 20 19 13 23 23 N 1.31621 * 120.00374 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99741 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46965 * 60.00232 * 24 22 20 26 26 H 1.48500 * 109.46993 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47054 * 300.00445 * 24 22 20 28 28 C 1.39525 * 118.87906 * 359.75083 * 6 4 3 29 29 C 1.50692 * 119.71796 * 180.02562 * 28 6 4 30 30 N 1.31700 * 120.56688 * 0.02562 * 28 6 4 31 31 H 1.09002 * 109.47152 * 269.72594 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.72695 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.72676 * 1 2 3 34 34 H 1.08006 * 120.35064 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.47335 * 270.25637 * 5 4 3 36 36 H 1.09005 * 109.47158 * 30.25608 * 5 4 3 37 37 H 1.08997 * 109.47204 * 150.25438 * 5 4 3 38 38 H 1.08997 * 109.15922 * 247.91742 * 10 9 7 39 39 H 1.08996 * 109.16132 * 7.10689 * 10 9 7 40 40 H 1.09003 * 109.06576 * 169.06455 * 11 10 9 41 41 H 1.09006 * 109.07069 * 288.07599 * 11 10 9 42 42 H 1.08994 * 109.88016 * 62.52698 * 12 11 10 43 43 H 1.09006 * 109.87979 * 183.60848 * 12 11 10 44 44 H 1.09000 * 111.21098 * 88.78293 * 17 15 9 45 45 H 1.08995 * 110.87563 * 324.93139 * 17 15 9 46 46 H 1.09005 * 109.96108 * 263.00266 * 18 17 15 47 47 H 1.08998 * 109.96156 * 141.76488 * 18 17 15 48 48 H 0.96993 * 119.99755 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.47140 * 270.02499 * 29 28 6 50 50 H 1.09009 * 109.47141 * 30.02121 * 29 28 6 51 51 H 1.08999 * 109.47501 * 150.01851 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0043 5 6 4.3475 2.4923 0.0095 6 6 4.2313 -0.0340 -0.0016 7 6 5.7084 -0.0966 -0.0024 8 8 6.3152 -0.1180 -1.0554 9 7 6.3820 -0.1301 1.1645 10 6 5.6942 -0.1058 2.4730 11 6 6.1580 -1.2608 3.3581 12 6 7.6929 -1.3614 3.3966 13 6 8.1701 -1.5127 1.9712 14 1 7.6100 -2.3193 1.4981 15 6 7.8366 -0.1981 1.2202 16 1 8.2499 0.6681 1.7368 17 6 8.5594 -0.4535 -0.1078 18 6 9.8659 -1.1437 0.3757 19 7 9.5832 -1.7159 1.7161 20 6 10.4844 -2.3196 2.5520 21 1 10.1616 -2.7007 3.5095 22 6 11.8127 -2.4428 2.1680 23 7 12.2061 -1.9788 1.0007 24 14 13.0422 -3.2657 3.3085 25 1 12.6141 -4.6629 3.5725 26 1 14.3830 -3.2705 2.6702 27 1 13.1069 -2.5173 4.5895 28 6 3.4716 -1.2043 -0.0062 29 6 4.1627 -2.5435 -0.0121 30 7 2.1558 -1.1487 -0.0056 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3633 -0.8875 -0.5181 33 1 -0.3633 0.8925 -0.5096 34 1 1.6443 2.1381 0.0004 35 1 4.5340 2.8083 -1.0169 36 1 3.7723 3.2601 0.5271 37 1 5.2977 2.3429 0.5220 38 1 5.9108 0.8379 2.9736 39 1 4.6190 -0.1867 2.3136 40 1 5.7858 -1.1051 4.3707 41 1 5.7505 -2.1938 2.9686 42 1 8.1128 -0.4557 3.8340 43 1 7.9928 -2.2305 3.9822 44 1 8.7795 0.4814 -0.6231 45 1 7.9781 -1.1204 -0.7444 46 1 10.6701 -0.4111 0.4450 47 1 10.1448 -1.9384 -0.3162 48 1 13.1343 -2.0645 0.7327 49 1 4.3294 -2.8618 -1.0411 50 1 5.1202 -2.4605 0.5022 51 1 3.5384 -3.2767 0.4986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049600793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:52 Heat of formation + Delta-G solvation = 28.688004 kcal Electronic energy + Delta-G solvation = -31844.385315 eV Core-core repulsion = 27937.238592 eV Total energy + Delta-G solvation = -3907.146723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.16580 -39.83291 -37.70505 -35.45902 -34.40803 -33.87919 -32.64323 -32.09344 -29.47391 -28.97282 -28.27807 -27.99875 -27.37100 -24.64555 -24.44464 -22.44610 -21.51786 -21.34957 -20.79376 -19.74415 -19.13539 -17.20507 -17.03560 -16.46183 -15.80075 -15.26976 -15.09216 -14.80764 -14.66285 -14.59795 -14.11719 -13.98656 -13.58194 -13.51658 -13.38770 -13.35523 -13.17763 -13.02817 -12.73327 -12.48085 -12.46676 -12.27677 -12.18642 -11.93791 -11.90360 -11.77094 -11.58355 -11.13232 -10.84494 -10.72250 -10.58730 -10.49393 -10.12338 -10.03006 -9.87893 -9.81081 -9.64153 -9.61105 -9.11570 -8.85130 -8.58181 -8.27971 -6.83036 -5.69640 -3.04035 0.73352 1.00677 2.67273 3.06559 3.40796 3.44529 3.45544 3.46694 3.94972 4.32624 4.35334 4.46430 4.49991 4.82653 4.83415 5.04836 5.08034 5.14056 5.18590 5.27689 5.28789 5.33875 5.34284 5.35360 5.42451 5.46855 5.55628 5.57580 5.62236 5.64751 5.75761 5.79207 5.84757 5.93235 5.94931 6.01784 6.03402 6.08209 6.23506 6.27460 6.37791 6.46315 6.53722 6.70370 6.75805 6.87973 7.15441 7.56597 7.60769 7.67132 7.78627 7.84055 8.24902 8.31993 9.19514 9.83432 10.51452 11.42329 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.003009 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.929445 B = 9304.420957 C = 9598.912455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.142 3.858 3 C -0.184 4.184 4 C -0.004 4.004 5 C -0.122 4.122 6 C -0.177 4.177 7 C 0.572 3.428 8 O -0.520 6.520 9 N -0.591 5.591 10 C 0.113 3.887 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.160 3.840 14 H 0.017 0.983 15 C 0.115 3.885 16 H 0.080 0.920 17 C -0.131 4.131 18 C 0.173 3.827 19 N -0.592 5.592 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.174 3.826 29 C -0.112 4.112 30 N -0.488 5.488 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.253 0.747 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.436 7.770 1.175 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.204 4.204 4 C -0.012 4.012 5 C -0.178 4.178 6 C -0.183 4.183 7 C 0.358 3.642 8 O -0.396 6.396 9 N -0.324 5.324 10 C -0.010 4.010 11 C -0.168 4.168 12 C -0.154 4.154 13 C 0.051 3.949 14 H 0.034 0.966 15 C 0.011 3.989 16 H 0.098 0.902 17 C -0.169 4.169 18 C 0.048 3.952 19 N -0.316 5.316 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.036 3.964 29 C -0.169 4.169 30 N -0.199 5.199 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.317 6.929 0.580 23.375 hybrid contribution 1.124 0.404 0.650 1.360 sum -21.193 7.333 1.230 22.459 Atomic orbital electron populations 1.20735 0.88629 1.03556 1.03191 1.21379 0.97040 0.88119 0.92990 1.21711 0.93610 0.99412 1.05658 1.20308 0.93733 0.94461 0.92657 1.20901 1.00061 0.93288 1.03596 1.20757 0.94973 0.94491 1.08035 1.17922 0.85884 0.76621 0.83754 1.90817 1.68516 1.49354 1.30913 1.48026 1.07424 1.71852 1.05058 1.21671 0.96489 0.99358 0.83501 1.21905 0.97451 0.98283 0.99136 1.21427 0.92920 1.02407 0.98606 1.20653 0.87778 0.93424 0.93088 0.96594 1.22373 0.77111 0.99490 0.99898 0.90174 1.22961 0.97788 1.01338 0.94824 1.21756 0.91819 0.96172 0.85434 1.44088 1.02544 1.68011 1.16984 1.18933 0.88344 1.30372 0.97886 0.90410 1.24802 0.97105 1.01185 0.97198 1.69933 1.16036 1.50666 1.20042 0.86234 0.80722 0.79222 0.79767 1.21205 1.21625 1.21206 1.21306 0.88770 0.94699 0.91667 1.20845 1.00075 0.92052 1.03951 1.67377 1.08848 1.29086 1.14601 0.90225 0.90329 0.90634 0.84452 0.89834 0.90524 0.90760 0.91463 0.90819 0.90858 0.91759 0.91724 0.91346 0.92018 0.90008 0.92544 0.94217 0.93657 0.89648 0.90243 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.16 36.01 0.37 -0.34 16 2 C 0.14 1.48 6.78 -82.51 -0.56 0.92 16 3 C -0.18 -1.77 9.43 -39.50 -0.37 -2.15 16 4 C 0.00 -0.04 5.95 -103.91 -0.62 -0.66 16 5 C -0.12 -1.19 9.69 36.00 0.35 -0.84 16 6 C -0.18 -2.45 3.79 -104.82 -0.40 -2.84 16 7 C 0.57 9.24 4.23 -12.33 -0.05 9.19 16 8 O -0.52 -10.19 13.93 5.32 0.07 -10.11 16 9 N -0.59 -9.11 2.92 -165.45 -0.48 -9.60 16 10 C 0.11 1.38 6.32 -3.44 -0.02 1.36 16 11 C -0.13 -1.63 5.92 -26.42 -0.16 -1.79 16 12 C -0.12 -1.92 5.45 -27.25 -0.15 -2.07 16 13 C 0.16 3.25 2.58 -68.62 -0.18 3.08 16 14 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 15 C 0.12 2.14 3.28 -67.10 -0.22 1.92 16 16 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 17 C -0.13 -2.74 5.02 -25.25 -0.13 -2.86 16 18 C 0.17 4.31 5.47 -1.65 -0.01 4.30 16 19 N -0.59 -14.93 3.35 -163.51 -0.55 -15.48 16 20 C -0.23 -6.19 9.94 -15.06 -0.15 -6.34 16 21 H 0.08 2.03 7.31 -52.49 -0.38 1.64 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -27.07 10.46 55.49 0.58 -26.49 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 C 0.17 2.35 6.74 -82.17 -0.55 1.80 16 29 C -0.11 -1.43 9.79 36.00 0.35 -1.08 16 30 N -0.49 -6.24 10.17 -5.42 -0.06 -6.30 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.07 0.83 7.19 -51.93 -0.37 0.45 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 43 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.08 1.80 6.21 -51.93 -0.32 1.48 16 46 H 0.06 1.54 7.19 -51.93 -0.37 1.16 16 47 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.08 1.11 7.07 -51.92 -0.37 0.75 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -32.47 394.77 -10.52 -42.99 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.42 Total: 0.76 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.59 Total: 1.33 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.51 Total: -57.87 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.47 -10.52 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049600793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.678 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds