Wall clock time and date at job start Wed Apr 1 2020 02:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.41940 * 2 1 4 4 N 1.31851 * 120.76167 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72875 * 359.70617 * 4 3 2 6 6 C 1.38181 * 120.76080 * 0.58286 * 5 4 3 7 7 C 1.50699 * 120.41957 * 179.70329 * 6 5 4 8 8 C 1.53005 * 109.47251 * 269.72572 * 7 6 5 9 9 C 1.50701 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00160 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99720 * 179.97438 * 9 8 7 12 12 C 1.44510 * 116.65216 * 353.91433 * 11 9 8 13 13 C 1.51609 * 112.73484 * 154.48257 * 12 11 9 14 14 C 1.51328 * 111.98855 * 42.38219 * 13 12 11 15 15 C 1.51915 * 112.94095 * 303.77784 * 14 13 12 16 16 H 1.08997 * 107.47976 * 170.02398 * 15 14 13 17 17 C 1.51318 * 111.44329 * 289.18387 * 15 14 13 18 18 N 1.46827 * 107.26200 * 140.46662 * 17 15 14 19 19 C 1.36938 * 125.38031 * 181.17454 * 18 17 15 20 20 H 1.08006 * 119.99912 * 0.04630 * 19 18 17 21 21 C 1.38806 * 120.00086 * 180.02562 * 19 18 17 22 22 N 1.31613 * 120.00245 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47147 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47636 * 119.99713 * 23 21 19 26 26 H 1.48503 * 109.47189 * 239.99880 * 23 21 19 27 27 C 1.46902 * 109.24481 * 1.18816 * 18 17 15 28 28 C 1.44114 * 116.64886 * 173.93287 * 11 9 8 29 29 H 1.08999 * 109.49121 * 75.21896 * 28 11 9 30 30 C 1.38627 * 120.41875 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47262 * 269.97864 * 1 2 3 32 32 H 1.09003 * 109.46829 * 29.97737 * 1 2 3 33 33 H 1.09001 * 109.47177 * 149.97443 * 1 2 3 34 34 H 1.07994 * 119.61623 * 0.04938 * 3 2 1 35 35 H 1.08000 * 119.62238 * 180.31360 * 5 4 3 36 36 H 1.08995 * 109.47523 * 149.72518 * 7 6 5 37 37 H 1.09005 * 109.46803 * 29.72405 * 7 6 5 38 38 H 1.09005 * 109.46814 * 59.99666 * 8 7 6 39 39 H 1.08991 * 109.47073 * 299.99848 * 8 7 6 40 40 H 1.09003 * 108.82624 * 33.64199 * 12 11 9 41 41 H 1.08993 * 108.74273 * 275.26490 * 12 11 9 42 42 H 1.08991 * 108.96540 * 163.00625 * 13 12 11 43 43 H 1.09005 * 108.96411 * 281.76726 * 13 12 11 44 44 H 1.08997 * 108.68156 * 65.70612 * 14 13 12 45 45 H 1.08999 * 108.68251 * 183.64130 * 14 13 12 46 46 H 1.08994 * 109.84235 * 21.11958 * 17 15 14 47 47 H 1.09001 * 110.17895 * 259.99574 * 17 15 14 48 48 H 0.97003 * 120.00247 * 179.97438 * 22 21 19 49 49 H 1.08998 * 110.08890 * 222.86990 * 27 18 17 50 50 H 1.08998 * 110.08499 * 101.28951 * 27 18 17 51 51 H 1.07997 * 120.79134 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 0.0047 6 6 3.5948 -1.1470 -0.0011 7 6 4.4026 -2.4192 -0.0018 8 6 4.6754 -2.8494 -1.4446 9 6 5.4838 -4.1212 -1.4452 10 8 5.8092 -4.6335 -0.3951 11 7 5.8442 -4.6900 -2.6127 12 6 5.3049 -4.0983 -3.8158 13 6 6.1760 -4.3456 -5.0317 14 6 6.6945 -5.7666 -5.0778 15 6 7.4612 -6.1579 -3.8261 16 1 7.6359 -7.2328 -3.8718 17 6 8.7960 -5.4490 -3.7506 18 7 9.0096 -5.0704 -2.3482 19 6 10.0951 -4.3878 -1.8677 20 1 10.8825 -4.0826 -2.5411 21 6 10.1834 -4.0877 -0.5154 22 7 9.2235 -4.4587 0.3051 23 14 11.6645 -3.1571 0.1401 24 1 12.5955 -2.8579 -0.9775 25 1 11.2148 -1.8866 0.7638 26 1 12.3612 -3.9874 1.1553 27 6 7.8750 -5.5399 -1.5417 28 6 6.7275 -5.8259 -2.5329 29 1 6.1677 -6.6992 -2.1981 30 6 2.2089 -1.1954 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6675 2.1276 0.0008 35 1 5.3047 0.1285 0.0093 36 1 3.8463 -3.2032 0.5120 37 1 5.3489 -2.2490 0.5117 38 1 5.2318 -2.0654 -1.9584 39 1 3.7292 -3.0196 -1.9580 40 1 5.2072 -3.0231 -3.6657 41 1 4.3162 -4.5186 -3.9999 42 1 5.5916 -4.1524 -5.9313 43 1 7.0231 -3.6601 -5.0059 44 1 5.8503 -6.4419 -5.2170 45 1 7.3630 -5.8668 -5.9328 46 1 8.7767 -4.5566 -4.3760 47 1 9.5942 -6.1142 -4.0800 48 1 9.2853 -4.2493 1.2502 49 1 7.5742 -4.7678 -0.8335 50 1 8.1459 -6.4518 -1.0096 51 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050094058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:07 Heat of formation + Delta-G solvation = 29.561756 kcal Electronic energy + Delta-G solvation = -31079.086498 eV Core-core repulsion = 27171.977663 eV Total energy + Delta-G solvation = -3907.108834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61392 -40.23775 -37.78960 -35.40453 -34.52763 -33.71068 -33.11449 -32.04273 -30.41757 -29.42269 -27.47629 -27.21546 -25.63842 -25.04002 -23.82560 -23.05923 -21.98187 -21.16434 -20.35842 -19.11928 -17.81081 -17.13864 -16.97384 -16.75736 -16.35441 -15.78305 -15.39898 -14.73444 -14.61724 -14.39675 -14.33653 -14.01734 -13.68720 -13.55247 -13.53510 -13.15824 -13.11838 -12.96883 -12.77141 -12.55096 -12.28997 -12.13915 -11.91449 -11.63609 -11.52063 -11.45262 -11.09438 -10.96011 -10.84099 -10.74701 -10.53454 -10.30198 -10.17372 -9.96603 -9.85142 -9.67156 -9.55883 -9.47618 -8.97776 -8.79213 -8.40482 -7.84223 -6.67205 -5.50038 -2.92882 1.01073 1.19311 3.20263 3.45729 3.50923 3.52969 3.53837 3.73054 4.35165 4.57999 4.61425 4.61787 4.83038 4.87109 4.91217 4.96292 4.98986 5.08198 5.16503 5.21013 5.29779 5.30362 5.40746 5.41415 5.49602 5.54772 5.60055 5.62451 5.69327 5.74955 5.79436 5.89054 5.94953 5.98733 6.06075 6.09833 6.12079 6.24177 6.28582 6.29664 6.36075 6.50173 6.66575 6.67796 6.77598 6.83706 7.20493 7.64248 7.78026 7.88916 7.91771 8.18186 8.60169 8.85919 9.35073 9.96634 10.60144 11.51930 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.003552 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.768978 B = 7881.830129 C = 9734.966894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.086 3.914 4 N -0.480 5.480 5 C 0.096 3.904 6 C -0.119 4.119 7 C -0.064 4.064 8 C -0.131 4.131 9 C 0.499 3.501 10 O -0.502 6.502 11 N -0.588 5.588 12 C 0.118 3.882 13 C -0.128 4.128 14 C -0.103 4.103 15 C -0.098 4.098 16 H 0.073 0.927 17 C 0.142 3.858 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.905 5.905 23 Si 0.906 3.094 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.137 3.863 28 C 0.132 3.868 29 H 0.058 0.942 30 C -0.077 4.077 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.019 0.981 48 H 0.251 0.749 49 H 0.141 0.859 50 H 0.019 0.981 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.404 4.705 -7.298 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.142 4.142 3 C -0.071 4.071 4 N -0.188 5.188 5 C -0.060 4.060 6 C -0.121 4.121 7 C -0.102 4.102 8 C -0.171 4.171 9 C 0.286 3.714 10 O -0.376 6.376 11 N -0.322 5.322 12 C -0.005 4.005 13 C -0.166 4.166 14 C -0.141 4.141 15 C -0.118 4.118 16 H 0.091 0.909 17 C 0.015 3.985 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.552 5.552 23 Si 0.737 3.263 24 H -0.207 1.207 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.013 3.987 28 C 0.028 3.972 29 H 0.076 0.924 30 C -0.103 4.103 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.062 0.938 49 H 0.158 0.842 50 H 0.037 0.963 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.676 5.269 -6.583 19.584 hybrid contribution 0.458 -0.428 0.096 0.634 sum -17.218 4.841 -6.487 19.026 Atomic orbital electron populations 1.20707 0.90390 1.02982 1.02504 1.20919 0.97427 0.94237 1.01620 1.22621 0.90091 0.97303 0.97093 1.67691 1.08253 1.31396 1.11427 1.22795 1.00598 0.87089 0.95563 1.21023 0.94438 0.97015 0.99598 1.20316 1.00688 0.92984 0.96216 1.21676 1.00460 0.96722 0.98232 1.20480 0.80896 0.85974 0.84013 1.90750 1.52545 1.63337 1.31016 1.46598 1.47880 1.32049 1.05718 1.20737 0.96073 0.98038 0.85684 1.21109 1.00201 0.98333 0.96982 1.20780 0.99420 0.96191 0.97723 1.21018 0.96395 1.00594 0.93769 0.90883 1.20754 0.92876 0.95772 0.89050 1.44392 1.21686 1.65533 1.01265 1.19014 0.96844 1.28168 0.91923 0.90770 1.24819 0.98221 1.01225 0.96098 1.69939 1.31767 1.50371 1.03114 0.86134 0.82098 0.79329 0.78727 1.20698 1.21805 1.21832 1.22385 0.82594 1.01534 0.92225 1.21194 0.92080 0.86770 0.97203 0.92426 1.21424 0.93500 0.98152 0.97183 0.91011 0.91296 0.91370 0.83215 0.82539 0.89972 0.89080 0.89079 0.89730 0.91076 0.93207 0.91092 0.91117 0.92426 0.91821 0.96163 0.96326 0.93823 0.84242 0.96333 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.04 36.01 0.36 -0.33 16 2 C -0.14 -1.35 5.90 -104.48 -0.62 -1.96 16 3 C 0.09 0.93 10.86 -17.55 -0.19 0.74 16 4 N -0.48 -6.42 10.36 -13.25 -0.14 -6.56 16 5 C 0.10 1.27 10.86 -17.55 -0.19 1.07 16 6 C -0.12 -1.44 5.15 -104.48 -0.54 -1.98 16 7 C -0.06 -0.87 4.66 -27.88 -0.13 -1.00 16 8 C -0.13 -1.77 4.03 -27.88 -0.11 -1.89 16 9 C 0.50 9.15 6.89 -10.98 -0.08 9.08 16 10 O -0.50 -11.40 13.12 5.56 0.07 -11.32 16 11 N -0.59 -10.22 3.09 -169.83 -0.52 -10.74 16 12 C 0.12 1.53 5.70 -5.81 -0.03 1.50 16 13 C -0.13 -1.59 5.84 -28.28 -0.17 -1.75 16 14 C -0.10 -1.36 5.18 -28.13 -0.15 -1.51 16 15 C -0.10 -1.72 2.81 -92.35 -0.26 -1.98 16 16 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 17 C 0.14 3.00 6.70 -4.71 -0.03 2.97 16 18 N -0.60 -15.88 3.39 -172.86 -0.59 -16.47 16 19 C -0.23 -6.63 10.25 -15.06 -0.15 -6.78 16 20 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.20 5.48 -17.44 -0.10 -0.29 16 22 N -0.90 -27.46 10.18 55.49 0.56 -26.90 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 C 0.14 3.52 4.64 -3.14 -0.01 3.51 16 28 C 0.13 2.62 3.26 -68.85 -0.22 2.39 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 C -0.08 -0.80 9.55 -39.28 -0.37 -1.18 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.09 1.45 8.05 -51.93 -0.42 1.04 16 38 H 0.09 1.21 7.40 -51.93 -0.38 0.83 16 39 H 0.08 0.92 7.90 -51.93 -0.41 0.50 16 40 H 0.07 0.83 6.07 -51.93 -0.32 0.52 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.00 7.10 -51.93 -0.37 0.64 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 46 H 0.02 0.43 6.70 -51.93 -0.35 0.08 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.14 3.92 3.07 -51.93 -0.16 3.76 16 50 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -34.72 392.90 -10.98 -45.70 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.28 Total: 2.04 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.99 Total: 0.62 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.68 Total: -60.66 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.72 -10.98 -45.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050094058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.266 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds