Wall clock time and date at job start Wed Apr 1 2020 02:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.41940 * 2 1 4 4 N 1.31851 * 120.76167 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72875 * 359.70617 * 4 3 2 6 6 C 1.38181 * 120.76080 * 0.58286 * 5 4 3 7 7 C 1.50699 * 120.41957 * 179.70329 * 6 5 4 8 8 C 1.53005 * 109.47251 * 269.72572 * 7 6 5 9 9 C 1.50701 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00160 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99720 * 179.97438 * 9 8 7 12 12 C 1.44510 * 116.65216 * 353.91433 * 11 9 8 13 13 C 1.51609 * 112.73484 * 154.48257 * 12 11 9 14 14 C 1.51328 * 111.98855 * 42.38219 * 13 12 11 15 15 C 1.51915 * 112.94095 * 303.77784 * 14 13 12 16 16 H 1.08997 * 107.47976 * 170.02398 * 15 14 13 17 17 C 1.51318 * 111.44329 * 289.18387 * 15 14 13 18 18 N 1.46827 * 107.26200 * 140.46662 * 17 15 14 19 19 C 1.36938 * 125.38031 * 181.17454 * 18 17 15 20 20 H 1.08006 * 119.99912 * 0.04630 * 19 18 17 21 21 C 1.38806 * 120.00086 * 180.02562 * 19 18 17 22 22 N 1.31613 * 120.00245 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47147 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47636 * 119.99713 * 23 21 19 26 26 H 1.48503 * 109.47189 * 239.99880 * 23 21 19 27 27 C 1.46902 * 109.24481 * 1.18816 * 18 17 15 28 28 C 1.44114 * 116.64886 * 173.93287 * 11 9 8 29 29 H 1.08999 * 109.49121 * 75.21896 * 28 11 9 30 30 C 1.38627 * 120.41875 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47262 * 269.97864 * 1 2 3 32 32 H 1.09003 * 109.46829 * 29.97737 * 1 2 3 33 33 H 1.09001 * 109.47177 * 149.97443 * 1 2 3 34 34 H 1.07994 * 119.61623 * 0.04938 * 3 2 1 35 35 H 1.08000 * 119.62238 * 180.31360 * 5 4 3 36 36 H 1.08995 * 109.47523 * 149.72518 * 7 6 5 37 37 H 1.09005 * 109.46803 * 29.72405 * 7 6 5 38 38 H 1.09005 * 109.46814 * 59.99666 * 8 7 6 39 39 H 1.08991 * 109.47073 * 299.99848 * 8 7 6 40 40 H 1.09003 * 108.82624 * 33.64199 * 12 11 9 41 41 H 1.08993 * 108.74273 * 275.26490 * 12 11 9 42 42 H 1.08991 * 108.96540 * 163.00625 * 13 12 11 43 43 H 1.09005 * 108.96411 * 281.76726 * 13 12 11 44 44 H 1.08997 * 108.68156 * 65.70612 * 14 13 12 45 45 H 1.08999 * 108.68251 * 183.64130 * 14 13 12 46 46 H 1.08994 * 109.84235 * 21.11958 * 17 15 14 47 47 H 1.09001 * 110.17895 * 259.99574 * 17 15 14 48 48 H 0.97003 * 120.00247 * 179.97438 * 22 21 19 49 49 H 1.08998 * 110.08890 * 222.86990 * 27 18 17 50 50 H 1.08998 * 110.08499 * 101.28951 * 27 18 17 51 51 H 1.07997 * 120.79134 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 0.0047 6 6 3.5948 -1.1470 -0.0011 7 6 4.4026 -2.4192 -0.0018 8 6 4.6754 -2.8494 -1.4446 9 6 5.4838 -4.1212 -1.4452 10 8 5.8092 -4.6335 -0.3951 11 7 5.8442 -4.6900 -2.6127 12 6 5.3049 -4.0983 -3.8158 13 6 6.1760 -4.3456 -5.0317 14 6 6.6945 -5.7666 -5.0778 15 6 7.4612 -6.1579 -3.8261 16 1 7.6359 -7.2328 -3.8718 17 6 8.7960 -5.4490 -3.7506 18 7 9.0096 -5.0704 -2.3482 19 6 10.0951 -4.3878 -1.8677 20 1 10.8825 -4.0826 -2.5411 21 6 10.1834 -4.0877 -0.5154 22 7 9.2235 -4.4587 0.3051 23 14 11.6645 -3.1571 0.1401 24 1 12.5955 -2.8579 -0.9775 25 1 11.2148 -1.8866 0.7638 26 1 12.3612 -3.9874 1.1553 27 6 7.8750 -5.5399 -1.5417 28 6 6.7275 -5.8259 -2.5329 29 1 6.1677 -6.6992 -2.1981 30 6 2.2089 -1.1954 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6675 2.1276 0.0008 35 1 5.3047 0.1285 0.0093 36 1 3.8463 -3.2032 0.5120 37 1 5.3489 -2.2490 0.5117 38 1 5.2318 -2.0654 -1.9584 39 1 3.7292 -3.0196 -1.9580 40 1 5.2072 -3.0231 -3.6657 41 1 4.3162 -4.5186 -3.9999 42 1 5.5916 -4.1524 -5.9313 43 1 7.0231 -3.6601 -5.0059 44 1 5.8503 -6.4419 -5.2170 45 1 7.3630 -5.8668 -5.9328 46 1 8.7767 -4.5566 -4.3760 47 1 9.5942 -6.1142 -4.0800 48 1 9.2853 -4.2493 1.2502 49 1 7.5742 -4.7678 -0.8335 50 1 8.1459 -6.4518 -1.0096 51 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050094058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:06 Heat of formation + Delta-G solvation = 8.040279 kcal Electronic energy + Delta-G solvation = -31080.019739 eV Core-core repulsion = 27171.977663 eV Total energy + Delta-G solvation = -3908.042076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.96365 -41.20377 -39.27845 -36.99525 -35.61199 -34.68044 -34.47289 -33.71827 -31.80853 -30.91966 -28.81639 -28.12404 -27.35847 -26.26919 -25.28672 -23.97896 -23.28968 -22.62802 -21.64796 -20.52386 -19.28660 -18.80305 -17.99413 -17.78055 -17.63152 -17.22944 -17.01643 -16.29335 -16.03171 -15.72750 -15.45067 -15.17882 -15.03690 -14.73190 -14.65842 -14.22639 -14.07079 -13.95455 -13.83680 -13.61547 -13.58558 -13.49595 -13.16173 -13.09531 -13.03370 -12.96904 -12.73721 -12.47403 -12.33744 -12.07238 -11.98826 -11.86288 -11.71494 -11.56653 -11.37401 -11.33591 -10.79174 -10.54969 -10.37659 -10.23614 -9.70908 -9.30606 -8.81924 -7.71096 -5.17726 0.14246 0.34011 1.41513 1.43082 1.53327 1.79848 2.24429 2.48517 2.82368 3.34962 3.42311 3.59076 3.71386 3.76134 3.82603 3.86445 3.96619 4.02199 4.07347 4.08674 4.10180 4.13038 4.20580 4.21677 4.46374 4.51419 4.62539 4.63952 4.69918 4.72909 4.79545 4.85951 4.88974 4.90012 4.94964 4.98325 5.01413 5.15480 5.17718 5.21302 5.25601 5.35139 5.36081 5.39492 5.43446 5.48820 5.52106 5.82298 5.88029 6.07308 6.47021 6.64689 7.03297 7.12976 7.44011 7.84324 8.45652 9.27417 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.003552 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.768978 B = 7881.830129 C = 9734.966894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C 0.078 3.922 4 N -0.507 5.507 5 C 0.074 3.926 6 C -0.121 4.121 7 C -0.054 4.054 8 C -0.116 4.116 9 C 0.486 3.514 10 O -0.559 6.559 11 N -0.589 5.589 12 C 0.105 3.895 13 C -0.127 4.127 14 C -0.098 4.098 15 C -0.091 4.091 16 H 0.081 0.919 17 C 0.137 3.863 18 N -0.623 5.623 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.065 4.065 22 N -0.933 5.933 23 Si 0.973 3.027 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.294 1.294 27 C 0.136 3.864 28 C 0.144 3.856 29 H 0.056 0.944 30 C -0.077 4.077 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.176 0.824 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.029 0.971 47 H 0.019 0.981 48 H 0.241 0.759 49 H 0.118 0.882 50 H -0.035 1.035 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.425 5.683 -10.351 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.082 4.082 6 C -0.123 4.123 7 C -0.093 4.093 8 C -0.155 4.155 9 C 0.276 3.724 10 O -0.437 6.437 11 N -0.322 5.322 12 C -0.016 4.016 13 C -0.164 4.164 14 C -0.136 4.136 15 C -0.110 4.110 16 H 0.099 0.901 17 C 0.012 3.988 18 N -0.350 5.350 19 C -0.373 4.373 20 H 0.097 0.903 21 C -0.259 4.259 22 N -0.582 5.582 23 Si 0.802 3.198 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.011 3.989 28 C 0.039 3.961 29 H 0.074 0.926 30 C -0.103 4.103 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.193 0.807 35 H 0.162 0.838 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.051 0.949 49 H 0.135 0.865 50 H -0.017 1.017 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.702 6.254 -9.720 23.710 hybrid contribution 1.373 -0.735 1.043 1.875 sum -19.329 5.519 -8.676 21.894 Atomic orbital electron populations 1.20792 0.87585 1.04446 1.03525 1.21281 0.99293 0.93240 0.99430 1.23151 0.89387 0.99100 0.96310 1.67663 1.09807 1.31521 1.12498 1.22691 1.00382 0.87836 0.97299 1.20795 0.95253 0.95502 1.00796 1.20119 0.99136 0.93888 0.96114 1.21635 1.01398 0.93952 0.98529 1.21384 0.80583 0.86957 0.83517 1.90730 1.54859 1.65050 1.33093 1.46721 1.46866 1.31262 1.07319 1.21176 0.97572 0.98923 0.83941 1.21167 0.99871 0.97034 0.98351 1.20789 1.00132 0.97384 0.95271 1.21009 0.94507 1.00715 0.94814 0.90100 1.20980 0.95144 0.96352 0.86316 1.44690 1.21427 1.65243 1.03605 1.19398 0.97733 1.27887 0.92303 0.90336 1.25672 1.01092 1.02627 0.96497 1.70244 1.33635 1.51687 1.02631 0.85086 0.78990 0.77577 0.78145 1.18867 1.21955 1.22127 1.22149 0.84723 0.98356 0.93622 1.20764 0.90666 0.87793 0.96880 0.92633 1.21702 0.92555 0.99678 0.96332 0.90035 0.89721 0.90099 0.80689 0.83839 0.90140 0.92914 0.88653 0.85665 0.89698 0.89565 0.86740 0.93466 0.89705 0.90071 0.95295 0.96352 0.94910 0.86502 1.01716 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.04 71.24 0.72 -0.22 16 2 C -0.13 -2.14 5.90 -19.77 -0.12 -2.26 16 3 C 0.08 1.54 10.86 84.69 0.92 2.46 16 4 N -0.51 -13.46 10.36 -195.85 -2.03 -15.49 16 5 C 0.07 2.01 10.86 84.67 0.92 2.93 16 6 C -0.12 -2.94 5.15 -19.77 -0.10 -3.04 16 7 C -0.05 -1.53 4.66 29.85 0.14 -1.39 16 8 C -0.12 -3.06 4.03 29.85 0.12 -2.94 16 9 C 0.49 18.22 6.89 87.66 0.60 18.82 16 10 O -0.56 -27.17 13.12 -3.03 -0.04 -27.21 16 11 N -0.59 -19.98 3.09 -809.61 -2.50 -22.48 16 12 C 0.11 2.34 5.70 86.29 0.49 2.84 16 13 C -0.13 -2.59 5.84 29.59 0.17 -2.41 16 14 C -0.10 -2.19 5.18 29.69 0.15 -2.04 16 15 C -0.09 -3.07 2.81 -11.92 -0.03 -3.10 16 16 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 17 C 0.14 5.80 6.70 85.77 0.57 6.38 16 18 N -0.62 -34.18 3.39 -700.80 -2.37 -36.56 16 19 C -0.24 -14.50 10.25 84.03 0.86 -13.64 16 20 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 21 C -0.07 -3.95 5.48 84.86 0.47 -3.49 16 22 N -0.93 -60.40 10.18 21.65 0.22 -60.18 16 23 Si 0.97 48.56 29.55 68.60 2.03 50.58 16 24 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 27 C 0.14 7.47 4.64 86.74 0.40 7.88 16 28 C 0.14 5.83 3.26 45.66 0.15 5.97 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 C -0.08 -1.44 9.55 22.47 0.21 -1.22 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.51 8.09 -2.39 -0.02 0.50 16 33 H 0.08 0.55 8.10 -2.39 -0.02 0.53 16 34 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 37 H 0.05 1.87 8.05 -2.38 -0.02 1.85 16 38 H 0.10 2.48 7.40 -2.38 -0.02 2.46 16 39 H 0.13 2.29 7.90 -2.39 -0.02 2.28 16 40 H 0.08 1.68 6.07 -2.39 -0.01 1.67 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.20 7.10 -2.38 -0.02 1.18 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 46 H 0.03 1.19 6.70 -2.39 -0.02 1.17 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 49 H 0.12 7.06 3.07 -2.39 -0.01 7.06 16 50 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 51 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -83.83 392.90 2.87 -80.96 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.91 Total: 18.85 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.65 Total: 11.52 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -6.68 Total: -134.70 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.58 kcal Total: -83.83 2.87 -80.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050094058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.996 kcal (2) G-P(sol) polarization free energy of solvation -83.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds