Wall clock time and date at job start Wed Apr 1 2020 02:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38221 * 120.42346 * 2 1 4 4 N 1.31855 * 120.76445 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72784 * 359.70953 * 4 3 2 6 6 C 1.38186 * 120.75899 * 0.57767 * 5 4 3 7 7 C 1.50703 * 120.41466 * 179.70359 * 6 5 4 8 8 C 1.52996 * 109.47210 * 269.72883 * 7 6 5 9 9 C 1.50699 * 109.46737 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00421 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99878 * 179.97438 * 9 8 7 12 12 C 1.47664 * 134.46107 * 179.97438 * 11 9 8 13 13 C 1.53503 * 85.98378 * 204.29468 * 12 11 9 14 14 C 1.47673 * 134.45491 * 359.96901 * 11 9 8 15 15 C 1.52671 * 113.57286 * 222.23596 * 13 12 11 16 16 C 1.53338 * 109.11979 * 286.15847 * 15 13 12 17 17 N 1.46880 * 108.76030 * 307.59249 * 16 15 13 18 18 C 1.36935 * 120.47244 * 235.52439 * 17 16 15 19 19 H 1.07999 * 120.00125 * 28.43226 * 18 17 16 20 20 C 1.38811 * 120.00268 * 208.44146 * 18 17 16 21 21 N 1.31620 * 119.99879 * 17.62739 * 20 18 17 22 22 Si 1.86805 * 119.99968 * 197.63372 * 20 18 17 23 23 H 1.48500 * 109.47041 * 59.99777 * 22 20 18 24 24 H 1.48505 * 109.46837 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47146 * 299.99617 * 22 20 18 26 26 C 1.46896 * 119.05911 * 55.54217 * 17 16 15 27 27 C 1.52676 * 113.57179 * 91.00784 * 13 12 11 28 28 C 1.38630 * 120.41424 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47503 * 270.02100 * 1 2 3 30 30 H 1.09002 * 109.46903 * 30.01931 * 1 2 3 31 31 H 1.09002 * 109.47496 * 150.01632 * 1 2 3 32 32 H 1.08003 * 119.61387 * 359.95985 * 3 2 1 33 33 H 1.07992 * 119.62223 * 180.31103 * 5 4 3 34 34 H 1.09002 * 109.46561 * 149.72630 * 7 6 5 35 35 H 1.08996 * 109.46841 * 29.73069 * 7 6 5 36 36 H 1.08993 * 109.47010 * 60.00234 * 8 7 6 37 37 H 1.09006 * 109.46662 * 299.99605 * 8 7 6 38 38 H 1.09003 * 113.79112 * 90.02738 * 12 11 9 39 39 H 1.08999 * 113.79060 * 318.56823 * 12 11 9 40 40 H 1.08995 * 113.79009 * 41.43521 * 14 11 9 41 41 H 1.08992 * 113.78857 * 269.96812 * 14 11 9 42 42 H 1.09001 * 109.52836 * 46.05529 * 15 13 12 43 43 H 1.09008 * 109.52981 * 166.27039 * 15 13 12 44 44 H 1.08995 * 109.59000 * 187.81055 * 16 15 13 45 45 H 1.09001 * 109.58737 * 67.37022 * 16 15 13 46 46 H 0.97006 * 119.99848 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.58955 * 184.67041 * 26 17 16 48 48 H 1.08997 * 109.58559 * 64.23457 * 26 17 16 49 49 H 1.08995 * 109.53140 * 193.72853 * 27 13 12 50 50 H 1.08997 * 109.53092 * 313.95090 * 27 13 12 51 51 H 1.07993 * 120.79347 * 0.04380 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1997 0.0005 5 6 4.2257 0.0821 0.0067 6 6 3.5947 -1.1472 0.0010 7 6 4.4025 -2.4195 0.0014 8 6 4.6764 -2.8502 -1.4409 9 6 5.4837 -4.1227 -1.4403 10 8 5.8084 -4.6344 -0.3898 11 7 5.8449 -4.6921 -2.6073 12 6 6.6113 -5.8994 -2.9755 13 6 6.9005 -5.1802 -4.3004 14 6 5.6326 -4.3587 -4.0301 15 6 6.7927 -6.0872 -5.5237 16 6 8.0105 -7.0180 -5.5677 17 7 9.2300 -6.2051 -5.4705 18 6 10.2035 -6.2962 -6.4293 19 1 9.9412 -6.5677 -7.4411 20 6 11.5275 -6.0397 -6.1007 21 7 11.9070 -6.0520 -4.8404 22 14 12.7706 -5.6768 -7.4470 23 1 12.3470 -4.4685 -8.1992 24 1 14.1040 -5.4383 -6.8383 25 1 12.8488 -6.8346 -8.3736 26 6 9.3908 -5.2934 -4.3300 27 6 8.1823 -4.3510 -4.2779 28 6 2.2088 -1.1955 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6675 2.1276 -0.0007 33 1 5.3046 0.1283 0.0120 34 1 3.8457 -3.2031 0.5152 35 1 5.3484 -2.2490 0.5156 36 1 5.2332 -2.0665 -1.9545 37 1 3.7305 -3.0206 -1.9550 38 1 5.9974 -6.7934 -3.0853 39 1 7.4968 -6.0624 -2.3612 40 1 5.7404 -3.2974 -4.2538 41 1 4.7278 -4.7945 -4.4535 42 1 5.8817 -6.6820 -5.4572 43 1 6.7665 -5.4785 -6.4276 44 1 8.0139 -7.5711 -6.5068 45 1 7.9682 -7.7149 -4.7307 46 1 12.8322 -5.8724 -4.6108 47 1 10.3035 -4.7106 -4.4539 48 1 9.4450 -5.8696 -3.4064 49 1 8.2013 -3.6860 -5.1413 50 1 8.2190 -3.7617 -3.3618 51 1 1.6887 -2.1419 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050586201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:35 Heat of formation + Delta-G solvation = 40.755250 kcal Electronic energy + Delta-G solvation = -29492.277890 eV Core-core repulsion = 25585.654442 eV Total energy + Delta-G solvation = -3906.623448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.77668 -40.49814 -38.45547 -35.87572 -34.81665 -33.93140 -32.54643 -30.91458 -30.18828 -29.88640 -27.68562 -27.21672 -26.39422 -24.79202 -23.98752 -23.21276 -22.38927 -21.17089 -20.79358 -19.02650 -18.07428 -17.32099 -17.03811 -16.99761 -16.33960 -15.85225 -15.76966 -14.86444 -14.66633 -14.64085 -14.57758 -13.92353 -13.67651 -13.56778 -13.43810 -13.37524 -13.21708 -13.08287 -12.99295 -12.81019 -12.65685 -12.48265 -12.13081 -11.95576 -11.83768 -11.58438 -11.42661 -11.27928 -11.05676 -10.73026 -10.50451 -10.35347 -10.15341 -10.00244 -9.88637 -9.78513 -9.71564 -9.61598 -9.38636 -9.09028 -8.54823 -8.46833 -6.68065 -5.80245 -3.23294 0.75990 0.94916 2.69208 2.89759 3.37297 3.43779 3.44368 3.46019 4.07701 4.29138 4.39167 4.48216 4.55367 4.60900 4.63279 4.66417 4.80028 4.84130 4.98384 5.10799 5.13785 5.17885 5.25227 5.29143 5.36903 5.39962 5.45946 5.49994 5.54274 5.54946 5.59420 5.65096 5.83249 5.86794 5.90613 5.96536 6.01809 6.05550 6.07645 6.25150 6.40249 6.41618 6.56902 6.57628 6.64733 6.79168 6.92500 7.31932 7.63891 7.67463 7.78013 7.83278 8.21980 8.44265 9.19803 9.83461 10.39619 11.27800 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.001986 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.266280 B =14092.941516 C =14546.897542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.090 3.910 4 N -0.479 5.479 5 C 0.096 3.904 6 C -0.125 4.125 7 C -0.061 4.061 8 C -0.128 4.128 9 C 0.532 3.468 10 O -0.547 6.547 11 N -0.639 5.639 12 C 0.116 3.884 13 C -0.073 4.073 14 C 0.101 3.899 15 C -0.120 4.120 16 C 0.146 3.854 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.172 3.828 27 C -0.116 4.116 28 C -0.075 4.075 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.018 0.982 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.734 10.024 6.889 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.067 4.067 4 N -0.187 5.187 5 C -0.061 4.061 6 C -0.127 4.127 7 C -0.099 4.099 8 C -0.168 4.168 9 C 0.321 3.679 10 O -0.426 6.426 11 N -0.374 5.374 12 C -0.006 4.006 13 C -0.074 4.074 14 C -0.022 4.022 15 C -0.160 4.160 16 C 0.019 3.981 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.046 3.954 27 C -0.155 4.155 28 C -0.101 4.101 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.036 0.964 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.981 10.671 7.710 25.622 hybrid contribution 0.140 -0.600 -0.687 0.922 sum -21.841 10.072 7.024 25.056 Atomic orbital electron populations 1.20727 0.90197 1.03187 1.02638 1.20947 0.97596 0.94161 1.01201 1.22668 0.90020 0.97445 0.96588 1.67696 1.08329 1.31270 1.11367 1.22736 1.00462 0.87085 0.95805 1.20952 0.94518 0.96775 1.00495 1.20280 1.00457 0.93376 0.95835 1.21567 1.00795 0.95911 0.98508 1.20244 0.79512 0.85876 0.82236 1.90705 1.56129 1.65279 1.30438 1.50084 1.54604 1.27518 1.05181 1.23273 0.94941 0.88140 0.94207 1.21994 0.94775 0.95978 0.94667 1.23466 0.98806 1.01018 0.78914 1.21962 0.99294 0.98243 0.96453 1.20884 0.86400 0.91873 0.98902 1.44010 1.17303 1.43649 1.26299 1.19128 0.86206 1.43722 0.89359 0.91763 1.25053 0.96967 1.01630 0.95957 1.70024 1.16533 1.52068 1.15887 0.86388 0.80559 0.78510 0.81412 1.21044 1.21673 1.20890 1.20779 0.94891 0.90667 0.89090 1.21953 0.94953 0.98302 1.00283 1.21430 0.93446 0.98273 0.96947 0.90875 0.91122 0.91273 0.82993 0.82677 0.89933 0.89550 0.88828 0.89193 0.90202 0.89764 0.90332 0.89981 0.92756 0.91649 0.92636 0.96379 0.93538 0.89218 0.96387 0.92052 0.93143 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.00 0.36 -0.16 16 2 C -0.14 -1.03 5.90 -104.48 -0.62 -1.65 16 3 C 0.09 0.78 10.86 -17.55 -0.19 0.59 16 4 N -0.48 -5.16 10.36 -13.25 -0.14 -5.30 16 5 C 0.10 0.95 10.86 -17.55 -0.19 0.76 16 6 C -0.13 -1.13 5.15 -104.48 -0.54 -1.67 16 7 C -0.06 -0.59 4.66 -27.88 -0.13 -0.72 16 8 C -0.13 -1.27 5.43 -27.89 -0.15 -1.42 16 9 C 0.53 7.54 8.06 -10.99 -0.09 7.45 16 10 O -0.55 -9.83 16.71 5.56 0.09 -9.74 16 11 N -0.64 -8.85 3.44 -180.22 -0.62 -9.47 16 12 C 0.12 1.76 7.62 -3.15 -0.02 1.74 16 13 C -0.07 -1.09 0.77 -154.43 -0.12 -1.21 16 14 C 0.10 1.17 7.74 -3.16 -0.02 1.15 16 15 C -0.12 -1.80 5.26 -26.73 -0.14 -1.94 16 16 C 0.15 2.83 6.39 -3.66 -0.02 2.81 16 17 N -0.59 -14.06 2.96 -172.21 -0.51 -14.57 16 18 C -0.25 -6.75 9.56 -15.06 -0.14 -6.90 16 19 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 20 C 0.00 0.07 4.89 -17.43 -0.09 -0.01 16 21 N -0.90 -25.80 11.21 55.49 0.62 -25.18 16 22 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.17 3.93 5.22 -3.65 -0.02 3.91 16 27 C -0.12 -2.07 5.21 -26.72 -0.14 -2.20 16 28 C -0.08 -0.60 9.55 -39.28 -0.37 -0.98 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 32 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.09 0.89 8.05 -51.93 -0.42 0.48 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 39 H 0.08 1.48 7.41 -51.93 -0.38 1.10 16 40 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 45 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.09 2.34 5.98 -51.93 -0.31 2.03 16 48 H 0.02 0.44 7.50 -51.93 -0.39 0.05 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 51 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -32.31 409.41 -10.67 -42.99 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.62 Total: -0.73 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.64 Total: -0.46 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.65 Total: -54.52 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.31 -10.67 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050586201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.740 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds