Wall clock time and date at job start Wed Apr 1 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38355 * 119.46356 * 2 1 4 4 C 1.38353 * 119.30683 * 179.72265 * 3 2 1 5 5 C 1.50703 * 120.85652 * 180.29669 * 4 3 2 6 6 C 1.40023 * 118.28703 * 0.55463 * 4 3 2 7 7 C 1.47838 * 120.55862 * 179.73725 * 6 4 3 8 8 O 1.21555 * 120.00088 * 269.73020 * 7 6 4 9 9 N 1.34779 * 119.99960 * 89.72449 * 7 6 4 10 10 C 1.47666 * 134.45457 * 179.97438 * 9 7 6 11 11 C 1.53507 * 85.97733 * 204.29375 * 10 9 7 12 12 C 1.47658 * 134.45776 * 359.97057 * 9 7 6 13 13 C 1.52671 * 113.57136 * 91.01766 * 11 10 9 14 14 C 1.53339 * 109.11340 * 73.81443 * 13 11 10 15 15 N 1.46880 * 108.76370 * 52.40568 * 14 13 11 16 16 C 1.36938 * 120.46673 * 124.47322 * 15 14 13 17 17 H 1.07997 * 119.99685 * 331.56821 * 16 15 14 18 18 C 1.38811 * 119.99675 * 151.85026 * 16 15 14 19 19 N 1.31620 * 120.00000 * 342.21286 * 18 16 15 20 20 Si 1.86798 * 119.99732 * 162.22326 * 18 16 15 21 21 H 1.48502 * 109.47144 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47161 * 119.99268 * 20 18 16 23 23 H 1.48495 * 109.46988 * 239.99359 * 20 18 16 24 24 C 1.46884 * 119.06727 * 304.74569 * 15 14 13 25 25 C 1.52671 * 113.56548 * 222.23317 * 11 10 9 26 26 C 1.39519 * 118.88176 * 359.46631 * 6 4 3 27 27 C 1.50694 * 119.71714 * 180.27156 * 26 6 4 28 28 N 1.31699 * 120.56959 * 0.25097 * 26 6 4 29 29 H 1.08997 * 109.47558 * 269.97858 * 1 2 3 30 30 H 1.08992 * 109.47350 * 29.98413 * 1 2 3 31 31 H 1.09000 * 109.46712 * 149.98138 * 1 2 3 32 32 H 1.08001 * 120.33989 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46669 * 270.26779 * 5 4 3 34 34 H 1.09000 * 109.46979 * 30.26492 * 5 4 3 35 35 H 1.08998 * 109.47059 * 150.26851 * 5 4 3 36 36 H 1.09004 * 113.78724 * 90.03029 * 10 9 7 37 37 H 1.08996 * 113.79661 * 318.56408 * 10 9 7 38 38 H 1.09000 * 113.79135 * 41.43645 * 12 9 7 39 39 H 1.08998 * 113.79502 * 269.97069 * 12 9 7 40 40 H 1.09004 * 109.53427 * 313.92810 * 13 11 10 41 41 H 1.09006 * 109.53346 * 193.70511 * 13 11 10 42 42 H 1.09001 * 109.58424 * 292.62241 * 14 13 11 43 43 H 1.08998 * 109.58774 * 172.19141 * 14 13 11 44 44 H 0.96999 * 119.99617 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58970 * 175.03802 * 24 15 14 46 46 H 1.08997 * 109.59051 * 295.47717 * 24 15 14 47 47 H 1.08998 * 109.53427 * 46.07952 * 25 11 10 48 48 H 1.09007 * 109.53169 * 166.29687 * 25 11 10 49 49 H 1.09000 * 109.47504 * 90.00113 * 27 26 6 50 50 H 1.09000 * 109.47493 * 210.00064 * 27 26 6 51 51 H 1.09003 * 109.47322 * 330.00351 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0058 5 6 4.3474 2.4924 0.0127 6 6 4.2312 -0.0340 -0.0004 7 6 5.7082 -0.0966 -0.0004 8 8 6.3155 -0.1218 -1.0531 9 7 6.3815 -0.1255 1.1668 10 6 7.8101 -0.1866 1.5354 11 6 7.3310 -0.7968 2.8599 12 6 5.9863 -0.1087 2.5894 13 6 7.2531 -2.3214 2.8369 14 6 8.6731 -2.8976 2.8889 15 7 9.3827 -2.3032 4.0293 16 6 9.9481 -3.1013 4.9877 17 1 9.5296 -4.0750 5.1952 18 6 11.0555 -2.6562 5.6966 19 7 11.7728 -1.6537 5.2354 20 14 11.5277 -3.4804 7.3051 21 1 10.5671 -4.5733 7.6020 22 1 12.8974 -4.0425 7.1898 23 1 11.4937 -2.4804 8.4023 24 6 9.4723 -0.8405 4.1303 25 6 8.0628 -0.2508 4.0836 26 6 3.4716 -1.2043 -0.0008 27 6 4.1627 -2.5434 -0.0012 28 7 2.1558 -1.1487 -0.0003 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8900 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6443 2.1381 0.0004 33 1 4.5348 2.8091 -1.0133 34 1 3.7717 3.2597 0.5304 35 1 5.2973 2.3426 0.5260 36 1 8.2780 0.7917 1.6457 37 1 8.3939 -0.8721 0.9211 38 1 5.1206 -0.7323 2.8126 39 1 5.9117 0.8927 3.0133 40 1 6.7609 -2.6474 1.9206 41 1 6.6864 -2.6704 3.7002 42 1 9.1992 -2.6566 1.9652 43 1 8.6242 -3.9794 3.0125 44 1 12.5468 -1.3430 5.7306 45 1 9.9497 -0.5678 5.0715 46 1 10.0558 -0.4516 3.2959 47 1 8.1228 0.8355 4.0177 48 1 7.5224 -0.5328 4.9873 49 1 4.3293 -2.8667 1.0263 50 1 3.5385 -3.2743 -0.5153 51 1 5.1203 -2.4580 -0.5149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050598433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:37 Heat of formation + Delta-G solvation = 45.469252 kcal Electronic energy + Delta-G solvation = -30992.426406 eV Core-core repulsion = 27086.007373 eV Total energy + Delta-G solvation = -3906.419034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19576 -40.24388 -38.17294 -35.87236 -34.49540 -33.96580 -32.46662 -30.69905 -29.86382 -29.40467 -28.24782 -27.80108 -26.72942 -26.05763 -24.17278 -22.53922 -22.34777 -21.38931 -20.86132 -19.47468 -18.07801 -17.37836 -17.29692 -16.41662 -16.24740 -15.38314 -15.25869 -15.04433 -14.86111 -14.29823 -14.00137 -13.74377 -13.63827 -13.58317 -13.52970 -13.40860 -13.18340 -13.05021 -12.98841 -12.69946 -12.51823 -12.31596 -12.23401 -12.02183 -11.95614 -11.85291 -11.70051 -11.44667 -11.09887 -10.76382 -10.52324 -10.39406 -10.21390 -10.12160 -9.88727 -9.73381 -9.66204 -9.65190 -9.34514 -9.00328 -8.62513 -8.48388 -6.69035 -5.81941 -3.24313 0.66532 0.94494 2.51907 2.82151 3.34999 3.37951 3.43662 3.45502 3.88609 4.22360 4.28287 4.36345 4.47335 4.57286 4.77097 4.98203 5.03778 5.07743 5.13492 5.15484 5.23057 5.26177 5.28679 5.35481 5.38586 5.43221 5.47216 5.48611 5.53802 5.56521 5.61231 5.71123 5.80693 5.85663 5.89006 5.90205 5.96129 6.03459 6.06521 6.23413 6.39670 6.42220 6.53270 6.57221 6.62871 6.78067 6.92516 7.29454 7.61076 7.67900 7.74769 7.77905 8.09637 8.43027 9.18876 9.82290 10.38308 11.26362 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.002597 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.645902 B =10779.329743 C =11112.702685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.145 3.855 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.121 4.121 6 C -0.177 4.177 7 C 0.590 3.410 8 O -0.537 6.537 9 N -0.630 5.630 10 C 0.118 3.882 11 C -0.072 4.072 12 C 0.103 3.897 13 C -0.108 4.108 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.171 3.829 25 C -0.127 4.127 26 C 0.175 3.825 27 C -0.112 4.112 28 N -0.488 5.488 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.137 7.682 -8.056 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.204 4.204 4 C -0.010 4.010 5 C -0.178 4.178 6 C -0.182 4.182 7 C 0.378 3.622 8 O -0.414 6.414 9 N -0.365 5.365 10 C -0.003 4.003 11 C -0.073 4.073 12 C -0.019 4.019 13 C -0.148 4.148 14 C 0.020 3.980 15 N -0.313 5.313 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.045 3.955 25 C -0.166 4.166 26 C 0.037 3.963 27 C -0.169 4.169 28 N -0.199 5.199 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.102 0.898 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.223 6.953 -8.742 23.103 hybrid contribution 0.692 0.609 0.819 1.233 sum -19.531 7.562 -7.923 22.392 Atomic orbital electron populations 1.20741 0.88525 1.03607 1.03291 1.21403 0.97105 0.88088 0.92678 1.21716 0.93556 0.99484 1.05618 1.20296 0.93802 0.94398 0.92554 1.20897 1.00001 0.93391 1.03504 1.20621 0.94379 0.94588 1.08587 1.17603 0.85917 0.76007 0.82675 1.90810 1.69396 1.50750 1.30467 1.50129 1.09773 1.71574 1.04988 1.23337 0.82075 1.00885 0.93992 1.21973 0.93374 0.96749 0.95239 1.23472 0.99294 1.00634 0.78533 1.21784 1.00397 0.92034 1.00545 1.20882 0.89772 0.96491 0.90809 1.44006 1.62808 1.01386 1.23066 1.19213 1.07011 1.00334 1.11569 0.91717 1.25031 0.95481 0.98920 1.00168 1.70042 1.17339 1.29457 1.37727 0.86264 0.77993 0.78826 0.83938 1.20264 1.21754 1.21581 1.20679 0.89987 0.82958 1.01898 1.22062 1.00626 0.98390 0.95565 1.21305 0.88822 0.94679 0.91516 1.20841 1.00163 0.92071 1.03800 1.67386 1.08803 1.29102 1.14604 0.90123 0.90581 0.90274 0.84360 0.89873 0.90380 0.90950 0.89689 0.89720 0.90582 0.89811 0.92923 0.91698 0.96342 0.92594 0.93683 0.89228 0.96376 0.92826 0.91941 0.89585 0.89816 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.16 36.00 0.37 -0.34 16 2 C 0.14 1.50 6.78 -82.51 -0.56 0.94 16 3 C -0.18 -1.76 9.43 -39.50 -0.37 -2.13 16 4 C 0.00 -0.03 5.95 -103.91 -0.62 -0.65 16 5 C -0.12 -1.14 9.69 36.01 0.35 -0.79 16 6 C -0.18 -2.39 5.39 -104.82 -0.56 -2.96 16 7 C 0.59 9.06 4.58 -12.33 -0.06 9.00 16 8 O -0.54 -10.16 17.83 5.32 0.09 -10.06 16 9 N -0.63 -8.87 3.44 -181.39 -0.62 -9.50 16 10 C 0.12 1.77 7.62 -3.15 -0.02 1.75 16 11 C -0.07 -1.07 0.77 -154.44 -0.12 -1.19 16 12 C 0.10 1.28 7.72 -3.18 -0.02 1.26 16 13 C -0.11 -1.73 5.21 -26.72 -0.14 -1.87 16 14 C 0.15 2.91 6.38 -3.66 -0.02 2.89 16 15 N -0.59 -13.92 2.97 -172.50 -0.51 -14.44 16 16 C -0.25 -6.64 9.56 -15.06 -0.14 -6.78 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 18 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 19 N -0.90 -25.36 11.22 55.49 0.62 -24.74 16 20 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.17 3.74 5.21 -3.90 -0.02 3.72 16 25 C -0.13 -2.11 5.24 -26.97 -0.14 -2.25 16 26 C 0.18 2.32 6.82 -82.17 -0.56 1.76 16 27 C -0.11 -1.33 9.79 36.00 0.35 -0.98 16 28 N -0.49 -6.18 10.17 -5.42 -0.06 -6.24 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.54 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.77 7.19 -51.93 -0.37 0.39 16 36 H 0.09 1.19 8.07 -51.93 -0.42 0.78 16 37 H 0.08 1.39 7.41 -51.93 -0.38 1.01 16 38 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 43 H 0.06 1.11 7.92 -51.93 -0.41 0.69 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.09 2.25 5.98 -51.93 -0.31 1.94 16 46 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 47 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 48 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 49 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.08 1.04 7.07 -51.93 -0.37 0.67 16 LS Contribution 406.69 15.07 6.13 6.13 Total: -1.00 -31.70 406.69 -10.29 -41.99 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.52 Total: -0.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.39 Total: 1.37 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.57 Total: -54.91 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.70 -10.29 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050598433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.457 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds