Wall clock time and date at job start Wed Apr 1 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38631 * 120.75316 * 2 1 4 4 C 1.38555 * 119.35299 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.54830 * 179.97438 * 4 3 2 6 6 N 1.31517 * 120.90440 * 359.97438 * 4 3 2 7 7 C 1.32716 * 121.64261 * 0.02562 * 6 4 3 8 8 C 1.48173 * 119.72448 * 179.97438 * 7 6 4 9 9 O 1.21510 * 119.99947 * 157.79809 * 8 7 6 10 10 N 1.34778 * 119.99946 * 337.80310 * 8 7 6 11 11 C 1.46934 * 120.70258 * 359.97438 * 10 8 7 12 12 C 1.52709 * 109.15345 * 234.15874 * 11 10 8 13 13 C 1.53155 * 109.36307 * 304.98062 * 12 11 10 14 14 C 1.52234 * 109.68658 * 60.02065 * 13 12 11 15 15 C 1.54493 * 110.27649 * 63.07016 * 14 13 12 16 16 C 1.55031 * 101.52578 * 153.38178 * 15 14 13 17 17 N 1.47487 * 104.90432 * 323.64638 * 16 15 14 18 18 C 1.36938 * 125.66273 * 204.02619 * 17 16 15 19 19 H 1.08006 * 119.99391 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99815 * 359.97438 * 18 17 16 21 21 N 1.31608 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99559 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47062 * 90.00040 * 22 20 18 24 24 H 1.48503 * 109.47002 * 209.99825 * 22 20 18 25 25 H 1.48497 * 109.47052 * 329.99620 * 22 20 18 26 26 C 1.47193 * 108.67546 * 24.01063 * 17 16 15 27 27 C 1.47074 * 120.70366 * 180.26988 * 10 8 7 28 28 C 1.38586 * 120.75891 * 179.72072 * 2 1 3 29 29 H 1.09003 * 109.47352 * 90.00775 * 1 2 3 30 30 H 1.08997 * 109.47479 * 329.99634 * 1 2 3 31 31 H 1.09006 * 109.46690 * 210.00122 * 1 2 3 32 32 H 1.08006 * 120.32347 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47221 * 89.99478 * 5 4 3 34 34 H 1.09000 * 109.46671 * 209.99824 * 5 4 3 35 35 H 1.09006 * 109.46606 * 329.99419 * 5 4 3 36 36 H 1.08999 * 109.56711 * 354.03968 * 11 10 8 37 37 H 1.09007 * 109.56673 * 114.38171 * 11 10 8 38 38 H 1.09007 * 109.57726 * 184.94258 * 12 11 10 39 39 H 1.09008 * 109.38369 * 64.90165 * 12 11 10 40 40 H 1.09001 * 109.43381 * 299.95842 * 13 12 11 41 41 H 1.08997 * 109.40194 * 180.02562 * 13 12 11 42 42 H 1.08998 * 111.01744 * 271.44055 * 15 14 13 43 43 H 1.08997 * 111.01811 * 35.32269 * 15 14 13 44 44 H 1.08995 * 110.35595 * 204.78848 * 16 15 14 45 45 H 1.09006 * 110.44471 * 82.55000 * 16 15 14 46 46 H 0.97005 * 119.99895 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.90954 * 239.11762 * 26 17 16 48 48 H 1.08992 * 109.90953 * 117.84828 * 26 17 16 49 49 H 1.08998 * 109.57043 * 247.36912 * 27 10 8 50 50 H 1.09000 * 109.57141 * 7.61688 * 27 10 8 51 51 H 1.08003 * 120.47285 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6010 1.1575 -0.0005 5 6 4.3760 2.4500 -0.0011 6 7 4.2487 0.0129 -0.0005 7 6 3.6083 -1.1495 -0.0005 8 6 4.3807 -2.4139 -0.0011 9 8 3.8662 -3.4404 0.3965 10 7 5.6541 -2.4255 -0.4426 11 6 6.2913 -1.1934 -0.9272 12 6 6.8418 -1.4328 -2.3313 13 6 7.7794 -2.6436 -2.3095 14 6 7.0142 -3.8766 -1.8493 15 6 5.8882 -4.2131 -2.8521 16 6 5.7296 -5.7404 -2.6387 17 7 7.0979 -6.2334 -2.3937 18 6 7.5352 -7.5136 -2.6058 19 1 8.5615 -7.7755 -2.3947 20 6 6.6594 -8.4745 -3.0921 21 7 5.4087 -8.1554 -3.3488 22 14 7.2562 -10.2208 -3.3820 23 1 7.0586 -11.0227 -2.1479 24 1 6.4853 -10.8288 -4.4961 25 1 8.6990 -10.1990 -3.7326 26 6 7.9155 -5.1207 -1.8839 27 6 6.4332 -3.6729 -0.4555 28 6 2.2157 -1.1909 0.0058 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 0.8899 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 1.6935 2.1367 0.0004 33 1 4.5632 2.7619 1.0263 34 1 5.3259 2.3037 -0.5153 35 1 3.7993 3.2191 -0.5150 36 1 5.5558 -0.3895 -0.9572 37 1 7.1083 -0.9181 -0.2601 38 1 7.3922 -0.5523 -2.6630 39 1 6.0156 -1.6246 -3.0160 40 1 8.6041 -2.4514 -1.6231 41 1 8.1731 -2.8149 -3.3114 42 1 4.9686 -3.6855 -2.5988 43 1 6.1955 -3.9911 -3.8740 44 1 5.3128 -6.2067 -3.5313 45 1 5.0944 -5.9404 -1.7756 46 1 4.7966 -8.8270 -3.6883 47 1 8.7621 -4.9473 -2.5482 48 1 8.2698 -5.3504 -0.8791 49 1 7.2427 -3.6053 0.2712 50 1 5.7843 -4.5113 -0.2024 51 1 1.6960 -2.1376 0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054156442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:28 Heat of formation + Delta-G solvation = 35.921452 kcal Electronic energy + Delta-G solvation = -31197.900161 eV Core-core repulsion = 27291.067103 eV Total energy + Delta-G solvation = -3906.833057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13600 -39.80628 -38.09236 -35.86073 -34.55581 -33.28542 -32.64141 -31.83425 -29.87037 -28.51365 -28.38302 -27.83252 -26.19295 -25.48040 -23.77531 -23.44851 -21.80221 -21.43352 -20.28180 -19.54271 -18.10582 -17.41676 -16.69587 -16.54485 -16.30445 -15.76888 -15.33868 -15.04112 -14.61835 -14.38466 -14.23486 -13.88621 -13.81081 -13.67087 -13.48318 -13.21053 -13.04538 -12.94436 -12.73180 -12.57340 -12.53984 -12.29621 -12.06373 -11.96634 -11.69966 -11.51674 -11.01679 -10.98168 -10.79163 -10.75797 -10.64528 -10.14625 -10.08028 -10.00350 -9.79496 -9.75243 -9.61327 -9.35302 -9.22689 -9.02146 -8.54971 -8.34269 -6.72710 -5.55133 -2.96797 0.49837 0.89028 2.71419 3.04749 3.45860 3.50202 3.52385 3.56559 3.88077 4.24336 4.36041 4.56467 4.68058 4.78213 4.90049 5.01508 5.06441 5.15235 5.18439 5.19827 5.23729 5.25999 5.33956 5.38364 5.48353 5.51443 5.58993 5.67022 5.69757 5.75786 5.78866 5.94255 6.01049 6.01985 6.03673 6.13214 6.13796 6.26954 6.36987 6.44838 6.47264 6.49779 6.66155 6.71586 6.86354 6.90843 7.02405 7.46010 7.63114 7.67108 7.73154 7.97399 8.28738 8.46527 9.31630 9.92809 10.58965 11.48358 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.002887 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.135406 B = 9696.504862 C =10763.660615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.157 4.157 4 C 0.121 3.879 5 C -0.103 4.103 6 N -0.454 5.454 7 C 0.099 3.901 8 C 0.565 3.435 9 O -0.528 6.528 10 N -0.583 5.583 11 C 0.077 3.923 12 C -0.135 4.135 13 C -0.102 4.102 14 C -0.083 4.083 15 C -0.127 4.127 16 C 0.154 3.846 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.149 3.851 27 C 0.129 3.871 28 C -0.121 4.121 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.013 0.987 46 H 0.251 0.749 47 H 0.027 0.973 48 H 0.021 0.979 49 H 0.064 0.936 50 H 0.099 0.901 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 25.593 5.717 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.177 4.177 4 C -0.017 4.017 5 C -0.161 4.161 6 N -0.168 5.168 7 C -0.038 4.038 8 C 0.351 3.649 9 O -0.403 6.403 10 N -0.313 5.313 11 C -0.045 4.045 12 C -0.173 4.173 13 C -0.140 4.140 14 C -0.084 4.084 15 C -0.166 4.166 16 C 0.029 3.971 17 N -0.330 5.330 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.023 3.977 27 C 0.007 3.993 28 C -0.141 4.141 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.044 0.956 48 H 0.039 0.961 49 H 0.082 0.918 50 H 0.118 0.882 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.111 24.789 5.868 25.981 hybrid contribution -0.467 -0.951 -0.131 1.067 sum -5.578 23.838 5.737 25.145 Atomic orbital electron populations 1.20850 0.89628 1.03639 1.03247 1.20354 0.97154 0.92476 0.95089 1.22005 0.94703 0.98802 1.02163 1.21434 0.91360 0.94027 0.94911 1.20736 1.00398 0.91594 1.03337 1.67435 1.39091 0.97692 1.12586 1.21226 0.91795 0.92000 0.98802 1.17870 0.81466 0.86785 0.78768 1.90831 1.69135 1.32694 1.47689 1.47962 1.11624 1.10638 1.61124 1.22690 0.99790 0.87925 0.94110 1.21893 0.99719 0.98297 0.97393 1.21401 0.97344 0.93848 1.01371 1.21326 0.97037 0.95106 0.94959 1.22918 0.96139 1.00372 0.97145 1.21929 0.86354 0.87170 1.01649 1.44560 1.06908 1.05692 1.75810 1.19065 0.95296 0.84319 1.36235 0.90582 1.24781 0.95761 0.98255 1.01951 1.69827 1.03661 1.32266 1.51173 0.86094 0.77555 0.84531 0.77446 1.21697 1.21746 1.20778 1.21183 0.93131 0.86885 0.96528 1.21610 0.95133 0.86288 0.96256 1.22007 0.93678 0.99691 0.98764 0.90163 0.90849 0.90571 0.84479 0.90192 0.90144 0.90576 0.84703 0.91977 0.91306 0.91737 0.92302 0.91663 0.92918 0.92412 0.87978 0.96857 0.93843 0.95552 0.96121 0.91803 0.88243 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.06 36.00 0.36 -0.36 16 2 C -0.04 -0.39 5.91 -104.35 -0.62 -1.01 16 3 C -0.16 -1.24 9.45 -39.32 -0.37 -1.62 16 4 C 0.12 1.10 6.78 -82.61 -0.56 0.54 16 5 C -0.10 -0.59 10.17 36.01 0.37 -0.22 16 6 N -0.45 -5.40 6.30 -6.06 -0.04 -5.44 16 7 C 0.10 1.38 6.45 -83.00 -0.54 0.85 16 8 C 0.57 9.74 7.62 -12.18 -0.09 9.65 16 9 O -0.53 -10.93 15.96 5.36 0.09 -10.85 16 10 N -0.58 -9.37 2.53 -174.42 -0.44 -9.81 16 11 C 0.08 0.99 5.95 -3.95 -0.02 0.97 16 12 C -0.13 -1.70 5.89 -26.80 -0.16 -1.85 16 13 C -0.10 -1.48 4.53 -27.04 -0.12 -1.60 16 14 C -0.08 -1.51 0.56 -154.09 -0.09 -1.60 16 15 C -0.13 -2.62 4.91 -24.87 -0.12 -2.74 16 16 C 0.15 3.99 5.56 -2.43 -0.01 3.98 16 17 N -0.60 -16.12 3.40 -170.22 -0.58 -16.70 16 18 C -0.22 -6.37 10.28 -15.06 -0.15 -6.53 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.35 5.49 -17.44 -0.10 -0.45 16 21 N -0.92 -27.98 10.09 55.49 0.56 -27.42 16 22 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.15 3.23 6.43 -3.32 -0.02 3.21 16 27 C 0.13 2.32 4.96 -4.05 -0.02 2.30 16 28 C -0.12 -1.47 9.33 -39.05 -0.36 -1.84 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 36 H 0.14 1.65 3.99 -78.01 -0.31 1.34 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.89 7.33 -51.92 -0.38 0.51 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.05 1.07 7.60 -51.93 -0.39 0.67 16 43 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 44 H 0.10 2.97 5.88 -51.93 -0.31 2.66 16 45 H 0.01 0.38 7.67 -51.93 -0.40 -0.02 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.03 0.56 7.79 -51.93 -0.40 0.16 16 48 H 0.02 0.45 7.80 -51.93 -0.40 0.04 16 49 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 50 H 0.10 2.16 6.23 -51.93 -0.32 1.83 16 51 H 0.15 1.83 7.80 -52.48 -0.41 1.42 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -34.13 393.10 -10.50 -44.63 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.36 Total: 0.19 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.63 Total: 1.68 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.50 Total: -59.37 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.13 -10.50 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054156442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.549 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds