Wall clock time and date at job start Wed Apr 1 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38620 * 120.31956 * 2 1 4 4 C 1.38589 * 118.48593 * 179.75198 * 3 2 1 5 5 C 1.39312 * 119.05897 * 0.51342 * 4 3 2 6 6 C 1.48169 * 119.72303 * 179.74932 * 5 4 3 7 7 O 1.21515 * 119.99942 * 350.49621 * 6 5 4 8 8 N 1.34779 * 119.99626 * 170.48822 * 6 5 4 9 9 C 1.46943 * 120.72115 * 352.29829 * 8 6 5 10 10 C 1.53184 * 108.90347 * 234.30301 * 9 8 6 11 11 C 1.53180 * 109.27567 * 304.61899 * 10 9 8 12 12 C 1.52062 * 109.73802 * 59.92660 * 11 10 9 13 13 C 1.54578 * 110.67939 * 64.30784 * 12 11 10 14 14 C 1.54471 * 102.75929 * 152.61667 * 13 12 11 15 15 N 1.47083 * 107.42738 * 338.69728 * 14 13 12 16 16 C 1.36940 * 125.62796 * 178.90354 * 15 14 13 17 17 H 1.07998 * 119.99786 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00132 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99761 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 119.99925 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47176 * 60.00615 * 20 18 16 22 22 H 1.48502 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47817 * 300.00254 * 20 18 16 24 24 C 1.47572 * 108.74027 * 358.92751 * 15 14 13 25 25 C 1.47100 * 120.71310 * 172.27134 * 8 6 5 26 26 N 1.32716 * 120.55178 * 359.47966 * 5 4 3 27 27 C 1.31518 * 121.64185 * 0.27159 * 26 5 4 28 28 C 1.50700 * 119.54817 * 180.02562 * 27 26 5 29 29 H 1.09005 * 109.46827 * 269.97361 * 1 2 3 30 30 H 1.08994 * 109.47611 * 29.97306 * 1 2 3 31 31 H 1.09005 * 109.46901 * 149.98000 * 1 2 3 32 32 H 1.08004 * 120.76273 * 0.02679 * 3 2 1 33 33 H 1.08007 * 120.47093 * 180.28631 * 4 3 2 34 34 H 1.08998 * 109.56276 * 114.47819 * 9 8 6 35 35 H 1.08999 * 109.65746 * 354.19154 * 9 8 6 36 36 H 1.08997 * 109.50811 * 184.67714 * 10 9 8 37 37 H 1.08999 * 109.53398 * 64.57309 * 10 9 8 38 38 H 1.09008 * 109.42685 * 299.84230 * 11 10 9 39 39 H 1.09001 * 109.38293 * 179.97438 * 11 10 9 40 40 H 1.09002 * 110.70598 * 34.34913 * 13 12 11 41 41 H 1.08998 * 110.86712 * 270.96280 * 13 12 11 42 42 H 1.08997 * 109.88065 * 219.19747 * 14 13 12 43 43 H 1.09002 * 109.87838 * 98.20120 * 14 13 12 44 44 H 0.97001 * 119.99583 * 179.97438 * 19 18 16 45 45 H 1.09007 * 110.37562 * 142.11607 * 24 15 14 46 46 H 1.08998 * 110.37576 * 264.46117 * 24 15 14 47 47 H 1.09002 * 109.56984 * 7.98004 * 25 8 6 48 48 H 1.08994 * 109.56947 * 247.62104 * 25 8 6 49 49 H 1.09007 * 109.47356 * 89.99833 * 28 27 26 50 50 H 1.09000 * 109.47619 * 210.00103 * 28 27 26 51 51 H 1.09004 * 109.47250 * 330.00210 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5920 1.1523 0.0053 5 6 4.2294 -0.0865 -0.0006 6 6 5.7097 -0.1510 -0.0007 7 8 6.3619 0.8603 -0.1695 8 7 6.3327 -1.3314 0.1867 9 6 5.5709 -2.5316 0.5587 10 6 6.1769 -3.1291 1.8323 11 6 7.6684 -3.3950 1.6061 12 6 8.3770 -2.0924 1.2697 13 6 8.3161 -1.1134 2.4644 14 6 9.5831 -0.2525 2.2651 15 7 10.5080 -1.0197 1.4169 16 6 11.7380 -0.5948 0.9905 17 1 12.3443 -1.2353 0.3672 18 6 12.2054 0.6591 1.3593 19 7 11.4666 1.4394 2.1194 20 14 13.8834 1.2384 0.7782 21 1 13.9101 1.2681 -0.7062 22 1 14.1467 2.6014 1.3058 23 1 14.9279 0.3063 1.2735 24 6 9.8914 -2.3227 1.1009 25 6 7.7900 -1.4461 0.0226 26 7 3.5218 -1.2093 -0.0006 27 6 2.2067 -1.1960 -0.0006 28 6 1.4503 -2.4994 -0.0001 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6846 2.1420 0.0004 33 1 4.1692 2.0652 0.0101 34 1 5.6240 -3.2623 -0.2484 35 1 4.5301 -2.2635 0.7405 36 1 5.6724 -4.0654 2.0709 37 1 6.0534 -2.4285 2.6581 38 1 7.7904 -4.0976 0.7816 39 1 8.1015 -3.8199 2.5116 40 1 8.3623 -1.6551 3.4092 41 1 7.4188 -0.4966 2.4155 42 1 10.0478 -0.0481 3.2296 43 1 9.3209 0.6847 1.7742 44 1 11.7934 2.3155 2.3774 45 1 10.1194 -2.6116 0.0749 46 1 10.2391 -3.0859 1.7971 47 1 8.2215 -0.4542 -0.1121 48 1 8.0119 -2.0638 -0.8476 49 1 1.2680 -2.8134 1.0278 50 1 0.4981 -2.3672 -0.5139 51 1 2.0377 -3.2606 -0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054165930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:22 Heat of formation + Delta-G solvation = 40.609909 kcal Electronic energy + Delta-G solvation = -31292.915146 eV Core-core repulsion = 27386.285396 eV Total energy + Delta-G solvation = -3906.629751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12747 -39.78093 -38.06882 -35.79160 -34.29482 -33.37726 -32.79606 -31.75532 -29.84071 -28.78054 -28.51460 -27.80235 -25.53981 -25.32259 -23.61158 -23.15720 -22.20437 -21.66425 -20.16830 -19.75343 -18.13898 -17.46273 -16.69960 -16.56828 -15.87084 -15.43523 -15.40023 -14.98058 -14.65915 -14.49655 -14.30655 -13.90247 -13.73964 -13.49364 -13.37802 -13.29440 -13.16608 -13.02928 -12.74441 -12.58653 -12.38794 -12.16061 -12.07681 -11.81839 -11.76099 -11.53790 -11.06051 -10.90961 -10.74284 -10.72161 -10.45671 -10.09927 -10.06654 -9.95857 -9.93652 -9.78669 -9.56072 -9.44983 -9.06129 -8.90442 -8.46337 -8.25473 -6.69116 -5.57605 -2.91163 0.47372 0.93161 2.75444 3.13405 3.48717 3.52357 3.54088 3.66635 3.86549 4.32148 4.47246 4.51077 4.59626 4.60694 4.93559 5.04493 5.08099 5.17872 5.21875 5.23303 5.25236 5.28485 5.32638 5.40780 5.50649 5.52192 5.64173 5.69988 5.72278 5.79467 5.83685 5.92020 6.04171 6.08437 6.09284 6.14279 6.18696 6.29771 6.37592 6.48917 6.51953 6.57801 6.67981 6.72188 6.88811 6.95122 7.02336 7.46962 7.69225 7.71539 7.80727 7.99298 8.36926 8.39874 9.34911 9.95615 10.62637 11.53601 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.002915 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.097500 B = 9603.030825 C =10618.026457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.113 4.113 5 C 0.088 3.912 6 C 0.563 3.437 7 O -0.523 6.523 8 N -0.585 5.585 9 C 0.072 3.928 10 C -0.133 4.133 11 C -0.102 4.102 12 C -0.084 4.084 13 C -0.127 4.127 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.148 3.852 25 C 0.132 3.868 26 N -0.445 5.445 27 C 0.117 3.883 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.058 0.942 35 H 0.144 0.856 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.047 0.953 44 H 0.251 0.749 45 H 0.037 0.963 46 H 0.021 0.979 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.248 -8.301 -3.034 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.134 4.134 5 C -0.049 4.049 6 C 0.348 3.652 7 O -0.399 6.399 8 N -0.316 5.316 9 C -0.050 4.050 10 C -0.172 4.172 11 C -0.140 4.140 12 C -0.086 4.086 13 C -0.165 4.165 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.022 3.978 25 C 0.010 3.990 26 N -0.157 5.157 27 C -0.023 4.023 28 C -0.165 4.165 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.077 0.923 35 H 0.160 0.840 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.122 0.878 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.266 -8.325 -3.112 26.784 hybrid contribution 0.658 1.107 -0.185 1.301 sum -24.609 -7.218 -3.298 25.856 Atomic orbital electron populations 1.20860 0.89995 1.03427 1.02892 1.20897 0.97657 0.93558 1.00204 1.21518 0.93600 0.98421 0.96872 1.22134 0.94862 0.99176 0.97224 1.21302 0.94440 0.89492 0.99698 1.17879 0.85509 0.83691 0.78077 1.90854 1.65478 1.33814 1.49749 1.47968 1.08360 1.08738 1.66503 1.22953 0.99882 0.86328 0.95865 1.21963 0.96295 1.00540 0.98379 1.21339 0.94713 0.96687 1.01294 1.21423 0.96493 0.94967 0.95724 1.22805 1.00141 0.97704 0.95892 1.21151 0.85685 0.92699 0.95009 1.44507 1.17028 1.12833 1.58687 1.18982 0.91741 0.99063 1.25845 0.90622 1.24794 0.98534 0.96895 1.00215 1.69979 1.36629 1.10031 1.40028 0.86225 0.83786 0.77697 0.78188 1.21233 1.21693 1.21316 1.21422 0.88906 0.89837 0.97682 1.21494 0.77628 1.03585 0.96265 1.67433 1.07209 1.29028 1.12058 1.21332 0.89630 0.95342 0.95949 1.20813 0.99360 0.92903 1.03382 0.90517 0.91154 0.90583 0.84106 0.83246 0.92320 0.83952 0.91450 0.91830 0.92286 0.91863 0.92861 0.92613 0.94391 0.93439 0.93828 0.94448 0.96129 0.87792 0.92051 0.90114 0.90247 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 9.62 36.01 0.35 -0.18 16 2 C -0.12 -0.98 5.91 -104.36 -0.62 -1.59 16 3 C -0.08 -0.70 9.85 -39.31 -0.39 -1.09 16 4 C -0.11 -1.38 9.63 -39.05 -0.38 -1.76 16 5 C 0.09 1.25 6.59 -83.01 -0.55 0.70 16 6 C 0.56 9.97 7.66 -12.18 -0.09 9.88 16 7 O -0.52 -11.28 15.81 5.35 0.08 -11.19 16 8 N -0.58 -9.69 2.60 -174.19 -0.45 -10.14 16 9 C 0.07 0.95 5.89 -3.71 -0.02 0.93 16 10 C -0.13 -1.69 5.92 -26.54 -0.16 -1.85 16 11 C -0.10 -1.48 4.64 -27.12 -0.13 -1.60 16 12 C -0.08 -1.55 0.56 -153.97 -0.09 -1.63 16 13 C -0.13 -2.62 4.92 -25.13 -0.12 -2.74 16 14 C 0.18 4.69 4.95 -2.95 -0.01 4.68 16 15 N -0.60 -16.14 3.39 -170.31 -0.58 -16.72 16 16 C -0.23 -6.62 10.28 -15.06 -0.15 -6.78 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -28.48 10.31 55.49 0.57 -27.90 16 20 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.15 3.18 6.15 -2.88 -0.02 3.17 16 25 C 0.13 2.48 5.08 -4.11 -0.02 2.45 16 26 N -0.44 -5.34 6.03 -6.06 -0.04 -5.38 16 27 C 0.12 1.08 6.78 -82.61 -0.56 0.52 16 28 C -0.11 -0.62 9.77 36.01 0.35 -0.27 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.08 0.26 5.95 -51.93 -0.31 -0.05 16 32 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.15 1.85 7.67 -52.48 -0.40 1.45 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 1.78 3.98 -85.55 -0.34 1.44 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.88 7.42 -51.93 -0.39 0.50 16 38 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 41 H 0.06 1.16 7.70 -51.93 -0.40 0.76 16 42 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 43 H 0.05 1.41 7.38 -51.93 -0.38 1.03 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 46 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 47 H 0.10 2.41 6.61 -51.93 -0.34 2.07 16 48 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 49 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 50 H 0.08 0.30 5.94 -51.93 -0.31 -0.01 16 51 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -34.77 390.18 -10.53 -45.30 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.28 Total: -0.43 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -2.70 Total: 2.50 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.49 Total: -60.14 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.77 -10.53 -45.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054165930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.905 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds