Wall clock time and date at job start Wed Apr 1 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38620 * 120.31956 * 2 1 4 4 C 1.38589 * 118.48593 * 179.75198 * 3 2 1 5 5 C 1.39312 * 119.05897 * 0.51342 * 4 3 2 6 6 C 1.48169 * 119.72303 * 179.74932 * 5 4 3 7 7 O 1.21515 * 119.99942 * 350.49621 * 6 5 4 8 8 N 1.34779 * 119.99626 * 170.48822 * 6 5 4 9 9 C 1.46943 * 120.72115 * 352.29829 * 8 6 5 10 10 C 1.53184 * 108.90347 * 234.30301 * 9 8 6 11 11 C 1.53180 * 109.27567 * 304.61899 * 10 9 8 12 12 C 1.52062 * 109.73802 * 59.92660 * 11 10 9 13 13 C 1.54578 * 110.67939 * 64.30784 * 12 11 10 14 14 C 1.54471 * 102.75929 * 152.61667 * 13 12 11 15 15 N 1.47083 * 107.42738 * 338.69728 * 14 13 12 16 16 C 1.36940 * 125.62796 * 178.90354 * 15 14 13 17 17 H 1.07998 * 119.99786 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00132 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99761 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 119.99925 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47176 * 60.00615 * 20 18 16 22 22 H 1.48502 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47817 * 300.00254 * 20 18 16 24 24 C 1.47572 * 108.74027 * 358.92751 * 15 14 13 25 25 C 1.47100 * 120.71310 * 172.27134 * 8 6 5 26 26 N 1.32716 * 120.55178 * 359.47966 * 5 4 3 27 27 C 1.31518 * 121.64185 * 0.27159 * 26 5 4 28 28 C 1.50700 * 119.54817 * 180.02562 * 27 26 5 29 29 H 1.09005 * 109.46827 * 269.97361 * 1 2 3 30 30 H 1.08994 * 109.47611 * 29.97306 * 1 2 3 31 31 H 1.09005 * 109.46901 * 149.98000 * 1 2 3 32 32 H 1.08004 * 120.76273 * 0.02679 * 3 2 1 33 33 H 1.08007 * 120.47093 * 180.28631 * 4 3 2 34 34 H 1.08998 * 109.56276 * 114.47819 * 9 8 6 35 35 H 1.08999 * 109.65746 * 354.19154 * 9 8 6 36 36 H 1.08997 * 109.50811 * 184.67714 * 10 9 8 37 37 H 1.08999 * 109.53398 * 64.57309 * 10 9 8 38 38 H 1.09008 * 109.42685 * 299.84230 * 11 10 9 39 39 H 1.09001 * 109.38293 * 179.97438 * 11 10 9 40 40 H 1.09002 * 110.70598 * 34.34913 * 13 12 11 41 41 H 1.08998 * 110.86712 * 270.96280 * 13 12 11 42 42 H 1.08997 * 109.88065 * 219.19747 * 14 13 12 43 43 H 1.09002 * 109.87838 * 98.20120 * 14 13 12 44 44 H 0.97001 * 119.99583 * 179.97438 * 19 18 16 45 45 H 1.09007 * 110.37562 * 142.11607 * 24 15 14 46 46 H 1.08998 * 110.37576 * 264.46117 * 24 15 14 47 47 H 1.09002 * 109.56984 * 7.98004 * 25 8 6 48 48 H 1.08994 * 109.56947 * 247.62104 * 25 8 6 49 49 H 1.09007 * 109.47356 * 89.99833 * 28 27 26 50 50 H 1.09000 * 109.47619 * 210.00103 * 28 27 26 51 51 H 1.09004 * 109.47250 * 330.00210 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5920 1.1523 0.0053 5 6 4.2294 -0.0865 -0.0006 6 6 5.7097 -0.1510 -0.0007 7 8 6.3619 0.8603 -0.1695 8 7 6.3327 -1.3314 0.1867 9 6 5.5709 -2.5316 0.5587 10 6 6.1769 -3.1291 1.8323 11 6 7.6684 -3.3950 1.6061 12 6 8.3770 -2.0924 1.2697 13 6 8.3161 -1.1134 2.4644 14 6 9.5831 -0.2525 2.2651 15 7 10.5080 -1.0197 1.4169 16 6 11.7380 -0.5948 0.9905 17 1 12.3443 -1.2353 0.3672 18 6 12.2054 0.6591 1.3593 19 7 11.4666 1.4394 2.1194 20 14 13.8834 1.2384 0.7782 21 1 13.9101 1.2681 -0.7062 22 1 14.1467 2.6014 1.3058 23 1 14.9279 0.3063 1.2735 24 6 9.8914 -2.3227 1.1009 25 6 7.7900 -1.4461 0.0226 26 7 3.5218 -1.2093 -0.0006 27 6 2.2067 -1.1960 -0.0006 28 6 1.4503 -2.4994 -0.0001 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6846 2.1420 0.0004 33 1 4.1692 2.0652 0.0101 34 1 5.6240 -3.2623 -0.2484 35 1 4.5301 -2.2635 0.7405 36 1 5.6724 -4.0654 2.0709 37 1 6.0534 -2.4285 2.6581 38 1 7.7904 -4.0976 0.7816 39 1 8.1015 -3.8199 2.5116 40 1 8.3623 -1.6551 3.4092 41 1 7.4188 -0.4966 2.4155 42 1 10.0478 -0.0481 3.2296 43 1 9.3209 0.6847 1.7742 44 1 11.7934 2.3155 2.3774 45 1 10.1194 -2.6116 0.0749 46 1 10.2391 -3.0859 1.7971 47 1 8.2215 -0.4542 -0.1121 48 1 8.0119 -2.0638 -0.8476 49 1 1.2680 -2.8134 1.0278 50 1 0.4981 -2.3672 -0.5139 51 1 2.0377 -3.2606 -0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054165930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:21 Heat of formation + Delta-G solvation = 19.286577 kcal Electronic energy + Delta-G solvation = -31293.839795 eV Core-core repulsion = 27386.285396 eV Total energy + Delta-G solvation = -3907.554400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15572 -41.02143 -39.55543 -37.38058 -35.25736 -34.51791 -34.03674 -33.24702 -31.60560 -30.45080 -29.32442 -28.69931 -27.32407 -26.47041 -25.43527 -23.94514 -23.08159 -22.96472 -22.05874 -21.03527 -19.68967 -18.67033 -18.51836 -17.65656 -16.96100 -16.82049 -16.67411 -16.44873 -16.02868 -15.75945 -15.40739 -15.35819 -15.12022 -14.66104 -14.60879 -14.29223 -14.02771 -13.93246 -13.84588 -13.63638 -13.60265 -13.40745 -13.34870 -13.15290 -12.98811 -12.89961 -12.72807 -12.38233 -12.21638 -12.14931 -12.04220 -11.90805 -11.82244 -11.62405 -11.36356 -11.33932 -11.10461 -10.77609 -10.71685 -9.89250 -9.88418 -9.54332 -8.90732 -7.84961 -5.21373 -0.41940 0.16995 1.40849 1.46247 1.52109 1.63707 1.89066 2.48094 2.71262 2.95840 3.32502 3.52946 3.61576 3.69067 3.77585 3.83318 3.86815 3.92508 3.95791 4.15011 4.22644 4.28112 4.38394 4.50635 4.56041 4.59589 4.70046 4.72371 4.73391 4.77684 4.81866 4.84704 4.88239 4.95689 4.97823 5.00502 5.05446 5.10577 5.17328 5.21849 5.22601 5.29261 5.32373 5.42850 5.45580 5.48628 5.60883 5.63178 5.74016 5.85558 6.17484 6.36442 6.68435 7.07048 7.07615 7.76562 8.42385 9.25486 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.002915 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.097500 B = 9603.030825 C =10618.026457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.077 4.077 4 C -0.129 4.129 5 C 0.059 3.941 6 C 0.553 3.447 7 O -0.584 6.584 8 N -0.583 5.583 9 C 0.069 3.931 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.069 4.069 13 C -0.109 4.109 14 C 0.194 3.806 15 N -0.625 5.625 16 C -0.241 4.241 17 H 0.087 0.913 18 C -0.073 4.073 19 N -0.955 5.955 20 Si 0.982 3.018 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.271 1.271 24 C 0.143 3.857 25 C 0.137 3.863 26 N -0.452 5.452 27 C 0.110 3.890 28 C -0.106 4.106 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.001 0.999 43 H -0.006 1.006 44 H 0.244 0.756 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.096 0.904 50 H 0.105 0.895 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.765 -11.759 -3.412 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.102 4.102 4 C -0.150 4.150 5 C -0.077 4.077 6 C 0.341 3.659 7 O -0.464 6.464 8 N -0.313 5.313 9 C -0.052 4.052 10 C -0.165 4.165 11 C -0.134 4.134 12 C -0.071 4.071 13 C -0.147 4.147 14 C 0.069 3.931 15 N -0.351 5.351 16 C -0.370 4.370 17 H 0.105 0.895 18 C -0.266 4.266 19 N -0.604 5.604 20 Si 0.810 3.190 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.197 1.197 24 C 0.018 3.982 25 C 0.014 3.986 26 N -0.165 5.165 27 C -0.030 4.030 28 C -0.162 4.162 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.188 0.812 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.019 0.981 43 H 0.012 0.988 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.123 0.877 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.803 -11.864 -3.496 31.346 hybrid contribution 1.596 2.163 -0.108 2.690 sum -27.207 -9.700 -3.604 29.108 Atomic orbital electron populations 1.20999 0.86743 1.05055 1.04261 1.21394 0.99807 0.92542 0.97056 1.21856 0.92004 1.00476 0.95888 1.22142 0.96565 0.97967 0.98329 1.20744 0.92319 0.91064 1.03579 1.18569 0.87346 0.83109 0.76904 1.90808 1.67229 1.35804 1.52531 1.48090 1.07399 1.09804 1.65988 1.23264 1.00091 0.85040 0.96765 1.21965 0.95167 1.02013 0.97338 1.21339 0.95377 0.94030 1.02665 1.21357 0.95062 0.96596 0.94062 1.22585 0.96596 0.97414 0.98130 1.20768 0.87860 0.92119 0.92383 1.44798 1.16744 1.14855 1.58690 1.19475 0.92761 0.99389 1.25403 0.89540 1.25759 1.02686 0.97263 1.00874 1.70254 1.38487 1.09994 1.41673 0.85101 0.79247 0.76842 0.77852 1.20348 1.22279 1.19672 1.21684 0.90592 0.87654 0.98319 1.21210 0.79436 1.00672 0.97238 1.67255 1.08698 1.27873 1.12647 1.22057 0.88753 0.97569 0.94608 1.20962 0.99846 0.90711 1.04713 0.88973 0.89906 0.88687 0.81169 0.85087 0.90614 0.82864 0.87379 0.93281 0.89952 0.90758 0.90846 0.93371 0.98114 0.98785 0.94703 0.93637 0.94521 0.93448 0.90568 0.88571 0.87668 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.62 71.24 0.69 0.20 16 2 C -0.11 -1.37 5.91 -19.69 -0.12 -1.48 16 3 C -0.08 -1.26 9.85 22.45 0.22 -1.04 16 4 C -0.13 -3.30 9.63 22.61 0.22 -3.09 16 5 C 0.06 1.72 6.59 41.91 0.28 2.00 16 6 C 0.55 21.15 7.66 86.88 0.67 21.81 16 7 O -0.58 -28.21 15.81 -3.76 -0.06 -28.27 16 8 N -0.58 -19.90 2.60 -823.32 -2.14 -22.04 16 9 C 0.07 1.68 5.89 86.36 0.51 2.19 16 10 C -0.13 -2.79 5.92 30.72 0.18 -2.61 16 11 C -0.10 -2.48 4.64 30.34 0.14 -2.34 16 12 C -0.07 -2.54 0.56 -51.83 -0.03 -2.57 16 13 C -0.11 -4.68 4.92 31.63 0.16 -4.53 16 14 C 0.19 10.98 4.95 86.77 0.43 11.40 16 15 N -0.62 -34.94 3.39 -692.75 -2.35 -37.29 16 16 C -0.24 -14.54 10.28 84.03 0.86 -13.67 16 17 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 18 C -0.07 -4.53 5.49 84.86 0.47 -4.07 16 19 N -0.95 -63.21 10.31 21.65 0.22 -62.99 16 20 Si 0.98 49.26 29.55 68.60 2.03 51.28 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.14 6.13 6.15 86.55 0.53 6.67 16 25 C 0.14 5.38 5.08 86.01 0.44 5.82 16 26 N -0.45 -10.29 6.03 -173.09 -1.04 -11.33 16 27 C 0.11 1.71 6.78 42.68 0.29 2.00 16 28 C -0.11 -0.75 9.77 71.24 0.70 -0.05 16 29 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.08 0.23 8.09 -2.39 -0.02 0.21 16 31 H 0.09 0.10 5.95 -2.38 -0.01 0.09 16 32 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.13 3.71 7.67 -2.91 -0.02 3.69 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.16 3.51 3.98 -68.77 -0.27 3.24 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.25 7.42 -2.39 -0.02 1.23 16 38 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 40 H 0.07 2.85 7.99 -2.39 -0.02 2.83 16 41 H 0.05 2.13 7.70 -2.39 -0.02 2.11 16 42 H 0.00 0.04 7.50 -2.39 -0.02 0.02 16 43 H -0.01 -0.41 7.38 -2.39 -0.02 -0.42 16 44 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.05 1.88 8.01 -2.38 -0.02 1.86 16 46 H 0.04 1.50 8.00 -2.39 -0.02 1.48 16 47 H 0.05 2.41 6.61 -2.39 -0.02 2.40 16 48 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 49 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.10 0.22 5.94 -2.39 -0.01 0.21 16 51 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -85.94 390.18 3.94 -82.00 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.66 Total: 11.99 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.62 Total: 16.64 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -5.31 Total: -133.64 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.28 kcal Total: -85.94 3.94 -82.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054165930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.282 kcal (2) G-P(sol) polarization free energy of solvation -85.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds