Wall clock time and date at job start Wed Apr 1 2020 02:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38227 * 120.41996 * 2 1 4 4 N 1.31855 * 120.76222 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72562 * 359.70232 * 4 3 2 6 6 C 1.38179 * 120.76507 * 0.58175 * 5 4 3 7 7 C 1.50699 * 120.41978 * 179.70261 * 6 5 4 8 8 C 1.50694 * 109.47232 * 269.72821 * 7 6 5 9 9 O 1.21286 * 120.00207 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99973 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.70114 * 0.02562 * 10 8 7 12 12 C 1.53194 * 108.92836 * 125.86689 * 11 10 8 13 13 C 1.53167 * 109.27127 * 55.22332 * 12 11 10 14 14 C 1.52244 * 109.61671 * 299.82654 * 13 12 11 15 15 C 1.54476 * 110.29629 * 181.99477 * 14 13 12 16 16 C 1.55025 * 101.52802 * 153.34186 * 15 14 13 17 17 N 1.47491 * 104.90787 * 323.65790 * 16 15 14 18 18 C 1.36933 * 125.65913 * 204.05218 * 17 16 15 19 19 H 1.08006 * 119.99758 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00396 * 359.96002 * 18 17 16 21 21 N 1.31615 * 119.99776 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46807 * 89.99726 * 22 20 18 24 24 H 1.48498 * 109.47094 * 209.99614 * 22 20 18 25 25 H 1.48500 * 109.46739 * 329.99938 * 22 20 18 26 26 C 1.47186 * 108.67374 * 24.01409 * 17 16 15 27 27 C 1.47087 * 120.69948 * 180.02562 * 10 8 7 28 28 C 1.38630 * 120.41749 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47366 * 269.97755 * 1 2 3 30 30 H 1.09001 * 109.46948 * 29.98177 * 1 2 3 31 31 H 1.09007 * 109.47009 * 149.97959 * 1 2 3 32 32 H 1.08001 * 119.61696 * 0.03977 * 3 2 1 33 33 H 1.07996 * 119.61693 * 180.31405 * 5 4 3 34 34 H 1.08993 * 109.47183 * 149.72579 * 7 6 5 35 35 H 1.09000 * 109.47052 * 29.73181 * 7 6 5 36 36 H 1.08998 * 109.55754 * 6.03360 * 11 10 8 37 37 H 1.08998 * 109.56111 * 245.70257 * 11 10 8 38 38 H 1.08998 * 109.50553 * 295.28053 * 12 11 10 39 39 H 1.09002 * 109.50324 * 175.16120 * 12 11 10 40 40 H 1.09002 * 109.44309 * 59.86539 * 13 12 11 41 41 H 1.09003 * 109.44389 * 179.79651 * 13 12 11 42 42 H 1.08994 * 111.01428 * 271.40832 * 15 14 13 43 43 H 1.09000 * 111.00794 * 35.27799 * 15 14 13 44 44 H 1.09003 * 110.34836 * 204.80499 * 16 15 14 45 45 H 1.08994 * 110.44399 * 82.56595 * 16 15 14 46 46 H 0.97008 * 119.99376 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.91088 * 239.09563 * 26 17 16 48 48 H 1.09002 * 109.90773 * 117.82594 * 26 17 16 49 49 H 1.08996 * 109.58138 * 352.23668 * 27 10 8 50 50 H 1.09003 * 109.57181 * 112.49802 * 27 10 8 51 51 H 1.07995 * 120.79128 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0822 0.0048 6 6 3.5948 -1.1471 -0.0009 7 6 4.4026 -2.4193 -0.0015 8 6 4.6714 -2.8430 -1.4225 9 8 4.2490 -2.1773 -2.3441 10 7 5.3820 -3.9613 -1.6693 11 6 5.9016 -4.7791 -0.5646 12 6 5.4285 -6.2242 -0.7510 13 6 5.8523 -6.7201 -2.1368 14 6 5.2230 -5.8409 -3.2087 15 6 5.5999 -6.3576 -4.6149 16 6 4.4016 -5.8557 -5.4608 17 7 3.2301 -5.9864 -4.5743 18 6 1.9297 -6.1142 -4.9836 19 1 1.1398 -6.2044 -4.2525 20 6 1.6264 -6.1275 -6.3381 21 7 2.5888 -6.0168 -7.2291 22 14 -0.1479 -6.3012 -6.8964 23 1 -0.7599 -4.9544 -7.0261 24 1 -0.1880 -6.9918 -8.2103 25 1 -0.9059 -7.0952 -5.8963 26 6 3.6911 -5.9576 -3.1768 27 6 5.6539 -4.3888 -3.0501 28 6 2.2089 -1.1955 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6675 2.1276 0.0007 33 1 5.3046 0.1284 0.0093 34 1 3.8463 -3.2032 0.5123 35 1 5.3489 -2.2491 0.5120 36 1 5.5275 -4.3920 0.3832 37 1 6.9911 -4.7483 -0.5688 38 1 4.3427 -6.2655 -0.6659 39 1 5.8784 -6.8560 0.0149 40 1 6.9380 -6.6750 -2.2220 41 1 5.5202 -7.7495 -2.2710 42 1 6.5339 -5.9125 -4.9574 43 1 5.6593 -7.4459 -4.6283 44 1 4.2771 -6.4771 -6.3477 45 1 4.5469 -4.8139 -5.7461 46 1 2.3767 -6.0258 -8.1756 47 1 3.3993 -6.8778 -2.6707 48 1 3.2638 -5.0966 -2.6627 49 1 5.0920 -3.7632 -3.7436 50 1 6.7201 -4.2975 -3.2575 51 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054169802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:30 Heat of formation + Delta-G solvation = 20.807558 kcal Electronic energy + Delta-G solvation = -31069.205903 eV Core-core repulsion = 27161.717458 eV Total energy + Delta-G solvation = -3907.488445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.72630 -40.03136 -38.26211 -35.84336 -33.76339 -33.63412 -33.04523 -31.94830 -30.17420 -28.78035 -27.99656 -27.38617 -25.59435 -25.23226 -23.87161 -23.23863 -21.96297 -21.53873 -20.13217 -19.21146 -18.02842 -17.18503 -17.04606 -16.79818 -16.72675 -15.86322 -15.26585 -14.95544 -14.48015 -14.43911 -14.33907 -14.01798 -13.64281 -13.41257 -13.34355 -13.17817 -13.09890 -13.06781 -12.78565 -12.58099 -12.49735 -12.26900 -12.09000 -12.04086 -11.52482 -11.48662 -11.10466 -11.06342 -10.86189 -10.80766 -10.73974 -10.14143 -10.02309 -9.90358 -9.80131 -9.67796 -9.53957 -9.50951 -9.36593 -8.84629 -8.58577 -8.44489 -6.75812 -5.59293 -2.99876 1.01571 1.23907 2.75747 3.08120 3.43337 3.47839 3.49627 3.73828 4.29373 4.52662 4.53988 4.59826 4.62347 4.75832 4.88067 4.90839 4.94814 5.00333 5.04696 5.16579 5.20576 5.26204 5.30221 5.40748 5.42427 5.55801 5.56238 5.60349 5.67268 5.70088 5.78774 5.87454 5.88426 5.96077 6.01561 6.11929 6.17878 6.18794 6.30492 6.33559 6.42323 6.56377 6.61996 6.64812 6.69946 6.84771 6.96833 7.53230 7.58028 7.67702 7.90974 7.91256 8.33489 8.42205 9.28299 9.89586 10.55189 11.44777 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008982 B = 0.003784 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.614671 B = 7397.665148 C = 9621.468670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C 0.093 3.907 4 N -0.482 5.482 5 C 0.104 3.896 6 C -0.109 4.109 7 C -0.097 4.097 8 C 0.513 3.487 9 O -0.523 6.523 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.137 4.137 13 C -0.101 4.101 14 C -0.085 4.085 15 C -0.134 4.134 16 C 0.153 3.847 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.155 3.845 27 C 0.132 3.868 28 C -0.061 4.061 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.011 0.989 46 H 0.251 0.749 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.098 0.902 50 H 0.060 0.940 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 5.208 19.476 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 C -0.064 4.064 4 N -0.189 5.189 5 C -0.053 4.053 6 C -0.112 4.112 7 C -0.137 4.137 8 C 0.300 3.700 9 O -0.398 6.398 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.175 4.175 13 C -0.138 4.138 14 C -0.086 4.086 15 C -0.173 4.173 16 C 0.028 3.972 17 N -0.328 5.328 18 C -0.347 4.347 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.030 3.970 27 C 0.010 3.990 28 C -0.087 4.087 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.029 0.971 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.117 0.883 50 H 0.079 0.921 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.716 6.385 18.774 20.937 hybrid contribution -1.313 -1.002 -0.320 1.682 sum 5.403 5.383 18.454 19.968 Atomic orbital electron populations 1.20729 0.90172 1.03496 1.02376 1.20900 0.97633 0.94035 1.01125 1.22620 0.89973 0.97388 0.96408 1.67647 1.08386 1.31033 1.11879 1.22503 0.99994 0.87124 0.95630 1.20288 0.94304 0.95408 1.01174 1.20628 1.01440 0.95950 0.95694 1.20373 0.78023 0.80692 0.90883 1.90784 1.49889 1.53065 1.46099 1.48126 1.54022 1.24475 1.07650 1.21730 0.98798 0.91512 0.89504 1.21968 1.02236 0.95253 0.98051 1.21393 0.99794 0.99312 0.93345 1.21340 0.97253 0.93945 0.96102 1.22987 0.99833 1.00190 0.94330 1.21939 0.82328 0.98528 0.94429 1.44531 1.03241 1.85790 0.99282 1.19035 0.82500 1.42072 0.91110 0.90803 1.24749 0.97665 1.02543 0.95670 1.69800 1.29445 1.57531 1.00319 0.86109 0.84127 0.77612 0.77897 1.21683 1.21655 1.20786 1.21159 0.90208 0.97195 0.88488 1.21494 0.99922 0.95341 0.82204 1.21361 0.93310 0.98427 0.95587 0.91001 0.91125 0.91049 0.83016 0.83210 0.87841 0.87812 0.90150 0.91381 0.91120 0.91010 0.92123 0.91448 0.92302 0.91794 0.87758 0.97082 0.93832 0.96313 0.96431 0.88327 0.92137 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.04 36.01 0.36 -0.62 16 2 C -0.14 -1.58 5.90 -104.48 -0.62 -2.19 16 3 C 0.09 1.13 10.86 -17.55 -0.19 0.94 16 4 N -0.48 -6.64 10.36 -13.25 -0.14 -6.78 16 5 C 0.10 1.34 10.86 -17.55 -0.19 1.15 16 6 C -0.11 -1.36 4.39 -104.48 -0.46 -1.81 16 7 C -0.10 -1.00 4.20 -29.04 -0.12 -1.12 16 8 C 0.51 7.72 7.69 -10.99 -0.08 7.64 16 9 O -0.52 -10.69 15.46 5.55 0.09 -10.60 16 10 N -0.61 -8.34 2.59 -173.18 -0.45 -8.79 16 11 C 0.11 1.00 6.32 -3.71 -0.02 0.98 16 12 C -0.14 -1.40 5.92 -26.54 -0.16 -1.55 16 13 C -0.10 -1.28 4.52 -27.03 -0.12 -1.40 16 14 C -0.09 -1.43 0.54 -154.13 -0.08 -1.51 16 15 C -0.13 -2.50 5.99 -24.89 -0.15 -2.65 16 16 C 0.15 3.78 5.59 -2.43 -0.01 3.77 16 17 N -0.60 -15.89 3.40 -170.22 -0.58 -16.47 16 18 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 19 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 21 N -0.92 -27.59 10.09 55.49 0.56 -27.03 16 22 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.16 3.31 5.42 -3.32 -0.02 3.29 16 27 C 0.13 2.17 4.88 -4.08 -0.02 2.15 16 28 C -0.06 -0.76 9.55 -39.27 -0.37 -1.13 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.10 0.86 7.66 -51.93 -0.40 0.47 16 35 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16 36 H 0.08 0.54 5.94 -51.93 -0.31 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.83 7.28 -51.93 -0.38 0.45 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 42 H 0.06 0.97 7.98 -51.93 -0.41 0.55 16 43 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 44 H 0.10 2.90 5.88 -51.93 -0.31 2.60 16 45 H 0.01 0.30 7.91 -51.93 -0.41 -0.11 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.02 0.40 7.61 -51.93 -0.40 0.01 16 48 H 0.02 0.40 7.55 -51.93 -0.39 0.01 16 49 H 0.10 2.07 6.58 -51.93 -0.34 1.73 16 50 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 51 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -35.85 396.79 -10.43 -46.29 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.36 Total: 0.63 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.51 Total: -0.97 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.61 Total: -59.06 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.85 -10.43 -46.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054169802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.095 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds