Wall clock time and date at job start Wed Apr 1 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.41950 * 2 1 4 4 N 1.31857 * 120.76063 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72773 * 359.70894 * 4 3 2 6 6 C 1.38180 * 120.76248 * 0.58042 * 5 4 3 7 7 C 1.50703 * 120.41941 * 179.70824 * 6 5 4 8 8 C 1.50703 * 109.46925 * 269.72274 * 7 6 5 9 9 O 1.21286 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99862 * 179.97438 * 8 7 6 11 11 C 1.47020 * 120.68214 * 0.02562 * 10 8 7 12 12 C 1.53196 * 108.87463 * 125.83519 * 11 10 8 13 13 C 1.53163 * 109.30911 * 55.20335 * 12 11 10 14 14 C 1.52232 * 109.65447 * 299.80769 * 13 12 11 15 15 C 1.54509 * 110.24780 * 297.09627 * 14 13 12 16 16 C 1.55025 * 101.52182 * 276.20864 * 15 14 13 17 17 N 1.47487 * 104.90197 * 323.64867 * 16 15 14 18 18 C 1.36936 * 125.65636 * 204.04503 * 17 16 15 19 19 H 1.08005 * 119.99906 * 161.52251 * 18 17 16 20 20 C 1.38807 * 120.00399 * 341.52129 * 18 17 16 21 21 N 1.31620 * 120.00229 * 157.56178 * 20 18 17 22 22 Si 1.86794 * 120.00074 * 337.56127 * 20 18 17 23 23 H 1.48503 * 109.47209 * 84.53588 * 22 20 18 24 24 H 1.48498 * 109.47709 * 204.53841 * 22 20 18 25 25 H 1.48500 * 109.47280 * 324.53780 * 22 20 18 26 26 C 1.47190 * 108.67697 * 24.01311 * 17 16 15 27 27 C 1.47076 * 120.70158 * 180.02562 * 10 8 7 28 28 C 1.38631 * 120.41775 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47482 * 270.02747 * 1 2 3 30 30 H 1.09007 * 109.46942 * 30.02803 * 1 2 3 31 31 H 1.09000 * 109.47441 * 150.02226 * 1 2 3 32 32 H 1.07999 * 119.61968 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.61585 * 180.30803 * 5 4 3 34 34 H 1.08992 * 109.47126 * 149.72219 * 7 6 5 35 35 H 1.09008 * 109.46783 * 29.71980 * 7 6 5 36 36 H 1.08995 * 109.62084 * 6.00118 * 11 10 8 37 37 H 1.09001 * 109.55470 * 245.62786 * 11 10 8 38 38 H 1.09004 * 109.50276 * 295.24749 * 12 11 10 39 39 H 1.09002 * 109.50416 * 175.16939 * 12 11 10 40 40 H 1.09008 * 109.43758 * 59.86484 * 13 12 11 41 41 H 1.09002 * 109.44213 * 179.78261 * 13 12 11 42 42 H 1.08995 * 111.01042 * 34.26987 * 15 14 13 43 43 H 1.09000 * 111.01180 * 158.14842 * 15 14 13 44 44 H 1.08994 * 110.35113 * 204.79084 * 16 15 14 45 45 H 1.09006 * 110.44504 * 82.54788 * 16 15 14 46 46 H 0.96997 * 120.00263 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.90730 * 239.11746 * 26 17 16 48 48 H 1.09000 * 110.06626 * 117.94405 * 26 17 16 49 49 H 1.08998 * 109.58312 * 112.68016 * 27 10 8 50 50 H 1.09004 * 109.68844 * 352.34426 * 27 10 8 51 51 H 1.08004 * 120.78753 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0067 6 6 3.5947 -1.1471 0.0010 7 6 4.4025 -2.4194 0.0015 8 6 4.6723 -2.8437 -1.4191 9 8 4.2498 -2.1787 -2.3413 10 7 5.3831 -3.9621 -1.6649 11 6 5.9019 -4.7796 -0.5586 12 6 5.4277 -6.2243 -0.7451 13 6 5.8512 -6.7214 -2.1306 14 6 5.2233 -5.8431 -3.2037 15 6 3.6829 -5.9493 -3.1479 16 6 3.4304 -7.2310 -3.9826 17 7 4.4408 -7.1897 -5.0562 18 6 4.3418 -7.8156 -6.2701 19 1 4.9663 -7.5001 -7.0928 20 6 3.4388 -8.8555 -6.4433 21 7 3.0134 -9.1636 -7.6501 22 14 2.8273 -9.8176 -4.9635 23 1 1.6817 -9.1018 -4.3466 24 1 2.3908 -11.1690 -5.3976 25 1 3.9232 -9.9469 -3.9698 26 6 5.5729 -6.3634 -4.6064 27 6 5.6560 -4.3902 -3.0453 28 6 2.2089 -1.1955 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6675 2.1276 0.0004 33 1 5.3046 0.1285 0.0120 34 1 3.8458 -3.2030 0.5153 35 1 5.3485 -2.2488 0.5157 36 1 5.5281 -4.3923 0.3892 37 1 6.9915 -4.7498 -0.5627 38 1 4.3417 -6.2646 -0.6603 39 1 5.8763 -6.8564 0.0212 40 1 6.9371 -6.6777 -2.2154 41 1 5.5181 -7.7507 -2.2641 42 1 3.3368 -6.0763 -2.1222 43 1 3.2142 -5.0817 -3.6124 44 1 2.4263 -7.2158 -4.4062 45 1 3.5679 -8.1198 -3.3666 46 1 2.3827 -9.8905 -7.7712 47 1 5.7146 -5.5252 -5.2886 48 1 6.4810 -6.9647 -4.5638 49 1 6.7228 -4.3021 -3.2510 50 1 5.0969 -3.7646 -3.7412 51 1 1.6886 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054169803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:34 Heat of formation + Delta-G solvation = 23.176921 kcal Electronic energy + Delta-G solvation = -30724.108934 eV Core-core repulsion = 26816.723232 eV Total energy + Delta-G solvation = -3907.385702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.92256 -40.23738 -38.61346 -36.13705 -33.95306 -33.80376 -33.05891 -32.02711 -30.86327 -29.07759 -28.51351 -27.55148 -26.05969 -25.40981 -23.59370 -23.23602 -22.50795 -21.76396 -20.65292 -19.29716 -18.38532 -17.33628 -17.21059 -16.95515 -16.79460 -15.97581 -15.46617 -15.37532 -14.97455 -14.62217 -14.48177 -14.07696 -13.84254 -13.74160 -13.51436 -13.40465 -13.27595 -13.16999 -13.05353 -12.88341 -12.75365 -12.67179 -12.36277 -12.07357 -11.81269 -11.76886 -11.55451 -11.25808 -11.12989 -10.97796 -10.71095 -10.39747 -10.27615 -10.05828 -9.98507 -9.87966 -9.68142 -9.65852 -9.43108 -9.01525 -8.68135 -8.63270 -7.02237 -5.93109 -3.22724 0.85121 1.06945 2.51831 2.86030 3.34374 3.46437 3.49112 3.57216 4.12698 4.35905 4.40344 4.45293 4.55643 4.59449 4.71219 4.73596 4.80272 4.83527 4.85474 4.89923 5.00644 5.01861 5.10593 5.17790 5.26586 5.27159 5.40673 5.42476 5.46205 5.53099 5.61227 5.70314 5.71147 5.72657 5.76530 5.91378 5.94343 5.95641 6.01270 6.05858 6.20001 6.29536 6.35753 6.45834 6.48971 6.56267 6.67218 6.77159 6.79901 7.30237 7.73188 7.75996 8.08331 8.33017 8.85297 9.70654 10.20359 11.23283 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002748 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.066928 B =10186.792439 C =10955.726135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.111 4.111 7 C -0.097 4.097 8 C 0.515 3.485 9 O -0.531 6.531 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.085 4.085 15 C -0.117 4.117 16 C 0.113 3.887 17 N -0.607 5.607 18 C -0.239 4.239 19 H 0.092 0.908 20 C 0.021 3.979 21 N -0.909 5.909 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.277 1.277 26 C 0.149 3.851 27 C 0.130 3.870 28 C -0.062 4.062 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.035 0.965 48 H 0.033 0.967 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 14.835 23.117 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.063 4.063 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.113 4.113 7 C -0.138 4.138 8 C 0.303 3.697 9 O -0.407 6.407 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.176 4.176 13 C -0.141 4.141 14 C -0.086 4.086 15 C -0.155 4.155 16 C -0.012 4.012 17 N -0.334 5.334 18 C -0.367 4.367 19 H 0.109 0.891 20 C -0.178 4.178 21 N -0.553 5.553 22 Si 0.714 3.286 23 H -0.213 1.213 24 H -0.232 1.232 25 H -0.203 1.203 26 C 0.023 3.977 27 C 0.008 3.992 28 C -0.088 4.088 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.085 0.915 50 H 0.113 0.887 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.485 15.864 22.405 27.565 hybrid contribution -0.773 -1.762 0.731 2.058 sum 1.713 14.102 23.135 27.148 Atomic orbital electron populations 1.20727 0.90142 1.03406 1.02485 1.20907 0.97636 0.94051 1.01197 1.22646 0.89970 0.97430 0.96221 1.67662 1.08384 1.31035 1.11753 1.22530 1.00063 0.87102 0.95440 1.20289 0.94288 0.95407 1.01328 1.20635 1.01610 0.95966 0.95567 1.20392 0.77891 0.80491 0.90955 1.90751 1.50544 1.53250 1.46139 1.48153 1.53839 1.24450 1.07688 1.21789 0.99105 0.91409 0.89288 1.22018 1.02127 0.95224 0.98231 1.21383 1.00081 0.99859 0.92749 1.21375 0.96688 0.93968 0.96566 1.22753 0.94222 0.99212 0.99342 1.21961 0.94403 0.94567 0.90300 1.44788 1.15204 1.58538 1.14867 1.18645 1.21404 1.11179 0.85425 0.89077 1.24985 0.98442 0.98331 0.96012 1.69848 1.33097 1.31488 1.20905 0.86954 0.78492 0.79498 0.83609 1.21343 1.23153 1.20345 1.21207 0.91424 0.94254 0.90815 1.21531 1.00692 0.94736 0.82239 1.21340 0.93275 0.98362 0.95855 0.90932 0.91086 0.91159 0.82958 0.83148 0.87769 0.87666 0.90010 0.91088 0.91102 0.90735 0.91714 0.90968 0.91823 0.91312 0.92640 0.95902 0.92757 0.94751 0.94878 0.91520 0.88664 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.04 36.00 0.36 -0.38 16 2 C -0.14 -1.29 5.90 -104.48 -0.62 -1.90 16 3 C 0.09 0.96 10.86 -17.55 -0.19 0.77 16 4 N -0.48 -5.74 10.36 -13.25 -0.14 -5.88 16 5 C 0.11 1.15 10.86 -17.55 -0.19 0.95 16 6 C -0.11 -1.12 4.39 -104.48 -0.46 -1.58 16 7 C -0.10 -0.78 4.20 -29.03 -0.12 -0.90 16 8 C 0.52 6.21 7.70 -10.98 -0.08 6.12 16 9 O -0.53 -8.85 15.46 5.55 0.09 -8.76 16 10 N -0.61 -6.72 2.82 -173.03 -0.49 -7.21 16 11 C 0.11 0.82 6.33 -3.66 -0.02 0.80 16 12 C -0.14 -1.27 5.89 -26.55 -0.16 -1.43 16 13 C -0.10 -1.31 4.55 -27.04 -0.12 -1.43 16 14 C -0.08 -1.28 0.55 -154.07 -0.09 -1.37 16 15 C -0.12 -2.00 5.73 -24.87 -0.14 -2.14 16 16 C 0.11 2.46 4.38 -2.43 -0.01 2.45 16 17 N -0.61 -14.72 3.21 -170.24 -0.55 -15.27 16 18 C -0.24 -6.87 10.57 -15.06 -0.16 -7.03 16 19 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 20 C 0.02 0.61 5.43 -17.43 -0.09 0.51 16 21 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 22 Si 0.88 22.77 24.27 -169.99 -4.13 18.65 16 23 H -0.29 -7.13 6.49 56.52 0.37 -6.77 16 24 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.28 -6.97 6.66 56.52 0.38 -6.59 16 26 C 0.15 2.88 6.43 -3.33 -0.02 2.86 16 27 C 0.13 1.76 4.98 -4.02 -0.02 1.74 16 28 C -0.06 -0.62 9.55 -39.28 -0.37 -1.00 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 31 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.11 0.56 7.89 -51.92 -0.41 0.15 16 36 H 0.08 0.41 5.94 -51.93 -0.31 0.11 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.71 6.22 -51.93 -0.32 0.39 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 42 H 0.06 0.95 5.99 -51.93 -0.31 0.64 16 43 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 44 H 0.06 1.33 6.64 -51.93 -0.35 0.98 16 45 H 0.02 0.52 5.18 -51.93 -0.27 0.25 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.03 0.67 7.80 -51.93 -0.40 0.27 16 48 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.10 1.53 6.88 -51.93 -0.36 1.18 16 51 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -35.85 389.58 -9.25 -45.10 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.17 Total: -1.89 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.51 Total: -2.95 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.40 Total: -56.01 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.13 Total: 18.65 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.85 -9.25 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054169803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.276 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds