Wall clock time and date at job start Wed Apr 1 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.41950 * 2 1 4 4 N 1.31857 * 120.76063 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72773 * 359.70894 * 4 3 2 6 6 C 1.38180 * 120.76248 * 0.58042 * 5 4 3 7 7 C 1.50703 * 120.41941 * 179.70824 * 6 5 4 8 8 C 1.50703 * 109.46925 * 269.72274 * 7 6 5 9 9 O 1.21286 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99862 * 179.97438 * 8 7 6 11 11 C 1.47020 * 120.68214 * 0.02562 * 10 8 7 12 12 C 1.53196 * 108.87463 * 125.83519 * 11 10 8 13 13 C 1.53163 * 109.30911 * 55.20335 * 12 11 10 14 14 C 1.52232 * 109.65447 * 299.80769 * 13 12 11 15 15 C 1.54509 * 110.24780 * 297.09627 * 14 13 12 16 16 C 1.55025 * 101.52182 * 276.20864 * 15 14 13 17 17 N 1.47487 * 104.90197 * 323.64867 * 16 15 14 18 18 C 1.36936 * 125.65636 * 204.04503 * 17 16 15 19 19 H 1.08005 * 119.99906 * 161.52251 * 18 17 16 20 20 C 1.38807 * 120.00399 * 341.52129 * 18 17 16 21 21 N 1.31620 * 120.00229 * 157.56178 * 20 18 17 22 22 Si 1.86794 * 120.00074 * 337.56127 * 20 18 17 23 23 H 1.48503 * 109.47209 * 84.53588 * 22 20 18 24 24 H 1.48498 * 109.47709 * 204.53841 * 22 20 18 25 25 H 1.48500 * 109.47280 * 324.53780 * 22 20 18 26 26 C 1.47190 * 108.67697 * 24.01311 * 17 16 15 27 27 C 1.47076 * 120.70158 * 180.02562 * 10 8 7 28 28 C 1.38631 * 120.41775 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47482 * 270.02747 * 1 2 3 30 30 H 1.09007 * 109.46942 * 30.02803 * 1 2 3 31 31 H 1.09000 * 109.47441 * 150.02226 * 1 2 3 32 32 H 1.07999 * 119.61968 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.61585 * 180.30803 * 5 4 3 34 34 H 1.08992 * 109.47126 * 149.72219 * 7 6 5 35 35 H 1.09008 * 109.46783 * 29.71980 * 7 6 5 36 36 H 1.08995 * 109.62084 * 6.00118 * 11 10 8 37 37 H 1.09001 * 109.55470 * 245.62786 * 11 10 8 38 38 H 1.09004 * 109.50276 * 295.24749 * 12 11 10 39 39 H 1.09002 * 109.50416 * 175.16939 * 12 11 10 40 40 H 1.09008 * 109.43758 * 59.86484 * 13 12 11 41 41 H 1.09002 * 109.44213 * 179.78261 * 13 12 11 42 42 H 1.08995 * 111.01042 * 34.26987 * 15 14 13 43 43 H 1.09000 * 111.01180 * 158.14842 * 15 14 13 44 44 H 1.08994 * 110.35113 * 204.79084 * 16 15 14 45 45 H 1.09006 * 110.44504 * 82.54788 * 16 15 14 46 46 H 0.96997 * 120.00263 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.90730 * 239.11746 * 26 17 16 48 48 H 1.09000 * 110.06626 * 117.94405 * 26 17 16 49 49 H 1.08998 * 109.58312 * 112.68016 * 27 10 8 50 50 H 1.09004 * 109.68844 * 352.34426 * 27 10 8 51 51 H 1.08004 * 120.78753 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0067 6 6 3.5947 -1.1471 0.0010 7 6 4.4025 -2.4194 0.0015 8 6 4.6723 -2.8437 -1.4191 9 8 4.2498 -2.1787 -2.3413 10 7 5.3831 -3.9621 -1.6649 11 6 5.9019 -4.7796 -0.5586 12 6 5.4277 -6.2243 -0.7451 13 6 5.8512 -6.7214 -2.1306 14 6 5.2233 -5.8431 -3.2037 15 6 3.6829 -5.9493 -3.1479 16 6 3.4304 -7.2310 -3.9826 17 7 4.4408 -7.1897 -5.0562 18 6 4.3418 -7.8156 -6.2701 19 1 4.9663 -7.5001 -7.0928 20 6 3.4388 -8.8555 -6.4433 21 7 3.0134 -9.1636 -7.6501 22 14 2.8273 -9.8176 -4.9635 23 1 1.6817 -9.1018 -4.3466 24 1 2.3908 -11.1690 -5.3976 25 1 3.9232 -9.9469 -3.9698 26 6 5.5729 -6.3634 -4.6064 27 6 5.6560 -4.3902 -3.0453 28 6 2.2089 -1.1955 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6675 2.1276 0.0004 33 1 5.3046 0.1285 0.0120 34 1 3.8458 -3.2030 0.5153 35 1 5.3485 -2.2488 0.5157 36 1 5.5281 -4.3923 0.3892 37 1 6.9915 -4.7498 -0.5627 38 1 4.3417 -6.2646 -0.6603 39 1 5.8763 -6.8564 0.0212 40 1 6.9371 -6.6777 -2.2154 41 1 5.5181 -7.7507 -2.2641 42 1 3.3368 -6.0763 -2.1222 43 1 3.2142 -5.0817 -3.6124 44 1 2.4263 -7.2158 -4.4062 45 1 3.5679 -8.1198 -3.3666 46 1 2.3827 -9.8905 -7.7712 47 1 5.7146 -5.5252 -5.2886 48 1 6.4810 -6.9647 -4.5638 49 1 6.7228 -4.3021 -3.2510 50 1 5.0969 -3.7646 -3.7412 51 1 1.6886 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054169803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:33 Heat of formation + Delta-G solvation = -0.535394 kcal Electronic energy + Delta-G solvation = -30725.137177 eV Core-core repulsion = 26816.723232 eV Total energy + Delta-G solvation = -3908.413945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.81830 -41.11996 -39.79150 -37.39812 -34.94489 -34.50126 -34.46908 -33.28864 -32.31379 -30.67503 -29.39278 -28.17044 -27.53974 -26.33712 -25.10655 -24.11507 -23.55290 -22.61791 -22.19945 -20.35026 -19.56524 -18.67031 -18.15720 -17.90487 -17.65305 -17.24405 -16.99993 -16.59957 -16.14897 -15.59993 -15.40474 -15.20498 -15.09826 -14.85140 -14.69764 -14.34708 -14.24468 -14.15657 -14.00724 -13.96285 -13.66201 -13.51839 -13.39801 -13.29764 -13.14646 -13.00952 -12.90266 -12.58119 -12.37372 -12.21060 -12.10462 -11.80773 -11.73598 -11.47828 -11.34903 -11.25683 -10.94067 -10.84257 -10.45925 -10.39943 -9.71428 -9.56486 -9.08638 -8.21523 -5.47909 0.14053 0.34797 1.26742 1.34086 1.44272 1.66658 2.02490 2.38537 2.84595 2.99091 3.28823 3.47445 3.52573 3.63472 3.72572 3.78843 3.85357 3.89765 4.06607 4.08461 4.13526 4.18265 4.20336 4.25796 4.33981 4.43717 4.44666 4.59387 4.61835 4.65079 4.74577 4.76745 4.79168 4.81817 4.87123 4.88836 4.91128 4.92683 4.98488 5.13220 5.15775 5.18570 5.20880 5.26003 5.34377 5.46672 5.51191 5.55820 5.63770 5.80758 6.06565 6.48722 6.72605 7.03082 7.22806 7.50289 8.07808 8.98696 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002748 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.066928 B =10186.792439 C =10955.726135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.142 4.142 3 C 0.078 3.922 4 N -0.510 5.510 5 C 0.086 3.914 6 C -0.117 4.117 7 C -0.087 4.087 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.604 5.604 11 C 0.103 3.897 12 C -0.132 4.132 13 C -0.103 4.103 14 C -0.069 4.069 15 C -0.103 4.103 16 C 0.108 3.892 17 N -0.626 5.626 18 C -0.236 4.236 19 H 0.056 0.944 20 C -0.040 4.040 21 N -0.958 5.958 22 Si 0.951 3.049 23 H -0.273 1.273 24 H -0.307 1.307 25 H -0.263 1.263 26 C 0.141 3.859 27 C 0.138 3.862 28 C -0.079 4.079 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.030 0.970 46 H 0.263 0.737 47 H 0.023 0.977 48 H 0.039 0.961 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 14.781 27.983 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C -0.079 4.079 4 N -0.218 5.218 5 C -0.070 4.070 6 C -0.119 4.119 7 C -0.127 4.127 8 C 0.301 3.699 9 O -0.468 6.468 10 N -0.336 5.336 11 C -0.018 4.018 12 C -0.169 4.169 13 C -0.140 4.140 14 C -0.070 4.070 15 C -0.141 4.141 16 C -0.017 4.017 17 N -0.353 5.353 18 C -0.365 4.365 19 H 0.073 0.927 20 C -0.234 4.234 21 N -0.605 5.605 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.235 1.235 25 H -0.188 1.188 26 C 0.016 3.984 27 C 0.014 3.986 28 C -0.104 4.104 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.159 15.817 27.342 31.745 hybrid contribution -0.928 -1.660 -0.896 2.102 sum 2.231 14.157 26.446 30.079 Atomic orbital electron populations 1.20771 0.88369 1.03754 1.03621 1.21229 0.99041 0.93793 1.00273 1.23022 0.89802 0.98668 0.96418 1.67640 1.09362 1.32040 1.12742 1.22860 1.00877 0.87386 0.95887 1.20529 0.94633 0.96071 1.00689 1.20715 1.03466 0.95597 0.92934 1.21124 0.76738 0.79927 0.92078 1.90741 1.52787 1.55048 1.48215 1.48227 1.53463 1.24636 1.07304 1.22143 1.00468 0.89851 0.89335 1.22013 1.02036 0.96591 0.96308 1.21396 1.00869 0.97805 0.93974 1.21271 0.95308 0.95655 0.94780 1.22654 0.95747 0.95778 0.99904 1.22048 0.92345 0.97225 0.90038 1.44897 1.17742 1.58422 1.14265 1.18586 1.20157 1.11163 0.86606 0.92653 1.25677 0.99399 0.99530 0.98834 1.69984 1.34762 1.32447 1.23334 0.85873 0.78661 0.77394 0.80175 1.19914 1.23521 1.18765 1.21422 0.90225 0.93211 0.93503 1.21212 1.00949 0.92647 0.83768 1.21673 0.93721 0.99108 0.95943 0.89296 0.90298 0.91242 0.81255 0.81863 0.84764 0.84137 0.86152 0.89039 0.91607 0.87675 0.90076 0.93296 0.88534 0.93190 0.95358 0.95247 0.92847 0.95879 0.94320 0.89954 0.92051 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.04 71.23 0.72 -0.55 16 2 C -0.14 -2.50 5.90 -19.77 -0.12 -2.62 16 3 C 0.08 1.53 10.86 84.69 0.92 2.45 16 4 N -0.51 -11.94 10.36 -195.85 -2.03 -13.97 16 5 C 0.09 1.77 10.86 84.67 0.92 2.69 16 6 C -0.12 -2.10 4.39 -19.77 -0.09 -2.19 16 7 C -0.09 -1.02 4.20 29.10 0.12 -0.90 16 8 C 0.51 10.89 7.70 87.66 0.67 11.57 16 9 O -0.59 -19.32 15.46 -3.05 -0.05 -19.37 16 10 N -0.60 -11.15 2.82 -819.74 -2.32 -13.47 16 11 C 0.10 0.95 6.33 86.35 0.55 1.50 16 12 C -0.13 -1.67 5.89 30.71 0.18 -1.49 16 13 C -0.10 -2.23 4.55 30.40 0.14 -2.09 16 14 C -0.07 -1.97 0.55 -51.90 -0.03 -2.00 16 15 C -0.10 -3.37 5.73 31.80 0.18 -3.19 16 16 C 0.11 4.66 4.38 86.88 0.38 5.04 16 17 N -0.63 -30.99 3.21 -692.51 -2.22 -33.21 16 18 C -0.24 -14.14 10.57 84.03 0.89 -13.25 16 19 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 20 C -0.04 -2.44 5.43 84.86 0.46 -1.98 16 21 N -0.96 -62.35 13.97 21.65 0.30 -62.05 16 22 Si 0.95 47.76 24.27 68.60 1.66 49.43 16 23 H -0.27 -13.01 6.49 99.48 0.65 -12.37 16 24 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 25 H -0.26 -12.42 6.66 99.48 0.66 -11.76 16 26 C 0.14 5.52 6.43 86.46 0.56 6.07 16 27 C 0.14 3.49 4.98 86.08 0.43 3.92 16 28 C -0.08 -1.42 9.55 22.47 0.21 -1.21 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 31 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 32 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.13 0.81 7.66 -2.39 -0.02 0.79 16 35 H 0.14 0.68 7.89 -2.38 -0.02 0.66 16 36 H 0.12 0.29 5.94 -2.39 -0.01 0.27 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.94 6.22 -2.38 -0.01 0.92 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 41 H 0.05 1.31 7.49 -2.39 -0.02 1.30 16 42 H 0.10 2.55 5.99 -2.39 -0.01 2.54 16 43 H 0.05 1.83 7.91 -2.39 -0.02 1.81 16 44 H 0.03 1.36 6.64 -2.39 -0.02 1.34 16 45 H 0.03 1.26 5.18 -2.38 -0.01 1.25 16 46 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 47 H 0.02 0.94 7.80 -2.38 -0.02 0.92 16 48 H 0.04 1.47 7.83 -2.39 -0.02 1.45 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.06 2.01 6.88 -2.39 -0.02 1.99 16 51 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -84.72 389.58 3.26 -81.45 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.82 Total: 9.42 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 7.10 Total: 1.76 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.27 Total: -122.70 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.66 Total: 49.43 kcal Total: -84.72 3.26 -81.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054169803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.919 kcal (2) G-P(sol) polarization free energy of solvation -84.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds