Wall clock time and date at job start Wed Apr 1 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31892 * 119.61147 * 2 1 4 4 C 1.31858 * 121.71966 * 180.30568 * 3 2 1 5 5 C 1.38225 * 120.76682 * 359.70575 * 4 3 2 6 6 C 1.38628 * 119.15906 * 0.02562 * 5 4 3 7 7 C 1.38174 * 119.61910 * 179.72333 * 2 1 3 8 8 C 1.50698 * 120.42113 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47304 * 84.72108 * 8 7 2 10 10 O 1.21289 * 119.99750 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00221 * 180.02562 * 9 8 7 12 12 C 1.46935 * 120.71401 * 359.97438 * 11 9 8 13 13 C 1.53180 * 108.93893 * 234.23427 * 12 11 9 14 14 C 1.53189 * 109.28013 * 304.68842 * 13 12 11 15 15 C 1.52073 * 109.67596 * 59.95692 * 14 13 12 16 16 C 1.54577 * 110.52308 * 177.48528 * 15 14 13 17 17 C 1.54468 * 102.75359 * 276.32255 * 16 15 14 18 18 N 1.47082 * 107.42506 * 338.70095 * 17 16 15 19 19 C 1.36939 * 125.62865 * 178.88632 * 18 17 16 20 20 H 1.08002 * 120.00350 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99534 * 0.02562 * 19 18 17 22 22 N 1.31616 * 120.00105 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46728 * 90.00681 * 23 21 19 25 25 H 1.48499 * 109.47038 * 210.00507 * 23 21 19 26 26 H 1.48498 * 109.46962 * 330.01087 * 23 21 19 27 27 C 1.47582 * 108.75033 * 358.92322 * 18 17 16 28 28 C 1.47110 * 120.71083 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47586 * 270.26776 * 1 2 3 30 30 H 1.09003 * 109.47506 * 30.27567 * 1 2 3 31 31 H 1.09005 * 109.46536 * 150.26832 * 1 2 3 32 32 H 1.07998 * 119.61687 * 179.72722 * 4 3 2 33 33 H 1.07994 * 120.42317 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.79229 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46913 * 324.72088 * 8 7 2 36 36 H 1.09002 * 109.47298 * 204.71674 * 8 7 2 37 37 H 1.09000 * 109.55796 * 114.39932 * 12 11 9 38 38 H 1.09001 * 109.64945 * 354.13088 * 12 11 9 39 39 H 1.09000 * 109.50559 * 184.74523 * 13 12 11 40 40 H 1.09006 * 109.50202 * 64.63023 * 13 12 11 41 41 H 1.09006 * 109.43414 * 299.89526 * 14 13 12 42 42 H 1.09002 * 109.40739 * 180.02562 * 14 13 12 43 43 H 1.09003 * 110.70812 * 158.04916 * 16 15 14 44 44 H 1.08996 * 110.86557 * 34.66750 * 16 15 14 45 45 H 1.09002 * 109.87908 * 219.20059 * 17 16 15 46 46 H 1.08996 * 109.87788 * 98.19920 * 17 16 15 47 47 H 0.97001 * 119.99940 * 179.97438 * 22 21 19 48 48 H 1.08999 * 110.37886 * 142.11879 * 27 18 17 49 49 H 1.09002 * 110.37372 * 264.36409 * 27 18 17 50 50 H 1.08996 * 109.57761 * 7.95843 * 28 11 9 51 51 H 1.09003 * 109.57112 * 247.56933 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1467 0.0000 4 6 3.4764 1.1952 -0.0060 5 6 4.2267 0.0343 -0.0064 6 6 3.5766 -1.1901 -0.0010 7 6 2.1899 -1.2012 0.0058 8 6 1.4373 -2.5068 0.0127 9 6 1.0726 -2.8839 -1.4001 10 8 1.3920 -2.1631 -2.3218 11 7 0.3908 -4.0215 -1.6392 12 6 -0.0045 -4.9059 -0.5345 13 6 0.5127 -6.3193 -0.8197 14 6 -0.0001 -6.7790 -2.1880 15 6 0.4971 -5.8292 -3.2666 16 6 0.0431 -6.3104 -4.6637 17 6 1.1223 -7.3520 -5.0329 18 7 2.3101 -7.0647 -4.2146 19 6 3.4797 -7.7768 -4.2285 20 1 4.2976 -7.4844 -3.5866 21 6 3.6140 -8.8744 -5.0676 22 7 2.6174 -9.2304 -5.8501 23 14 5.2096 -9.8455 -5.0871 24 1 5.1377 -10.9360 -4.0817 25 1 5.4173 -10.4293 -6.4366 26 1 6.3423 -8.9431 -4.7584 27 6 2.0333 -5.8827 -3.3753 28 6 0.0262 -4.4044 -3.0121 29 1 -0.3634 0.0048 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3632 -0.8925 -0.5097 32 1 3.9752 2.1531 -0.0102 33 1 5.3056 0.0805 -0.0118 34 1 4.1368 -2.1135 -0.0008 35 1 0.5293 -2.3996 0.6061 36 1 2.0648 -3.2856 0.4461 37 1 -1.0913 -4.9246 -0.4529 38 1 0.4252 -4.5414 0.3986 39 1 0.1533 -7.0008 -0.0487 40 1 1.6027 -6.3142 -0.8224 41 1 -1.0901 -6.7844 -2.1838 42 1 0.3664 -7.7849 -2.3929 43 1 0.0444 -5.4845 -5.3751 44 1 -0.9412 -6.7758 -4.6130 45 1 1.3718 -7.2682 -6.0907 46 1 0.7575 -8.3562 -4.8168 47 1 2.7113 -9.9971 -6.4368 48 1 2.4797 -6.0050 -2.3885 49 1 2.4134 -4.9801 -3.8539 50 1 0.5072 -3.7290 -3.7195 51 1 -1.0560 -4.3508 -3.1309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054197027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:41 Heat of formation + Delta-G solvation = 22.490853 kcal Electronic energy + Delta-G solvation = -31101.714698 eV Core-core repulsion = 27194.299246 eV Total energy + Delta-G solvation = -3907.415452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87997 -40.04877 -38.35655 -35.84997 -34.00303 -33.12345 -32.97503 -31.87805 -30.37399 -29.14458 -28.34490 -27.37127 -25.64762 -25.27342 -23.74117 -22.78624 -22.15066 -21.89998 -20.18841 -19.24344 -18.04855 -17.27198 -16.99279 -16.80030 -16.51229 -15.88138 -15.24803 -14.94356 -14.80022 -14.62058 -14.49395 -14.05363 -13.77823 -13.41741 -13.38274 -13.26148 -13.16096 -13.05415 -12.73032 -12.61023 -12.38558 -12.22018 -12.00362 -11.88465 -11.65382 -11.55050 -11.11276 -10.90592 -10.86746 -10.76046 -10.64635 -10.12449 -10.11094 -9.97061 -9.88963 -9.72833 -9.63617 -9.59202 -9.54082 -8.90054 -8.57391 -8.47325 -6.78672 -5.69118 -3.01541 0.94970 1.17104 2.64271 3.00725 3.39832 3.45285 3.47200 3.65326 4.15992 4.39523 4.49863 4.54664 4.61351 4.71721 4.80067 4.84109 5.03730 5.09146 5.14758 5.17129 5.20974 5.31817 5.35804 5.37653 5.41195 5.44850 5.51968 5.55823 5.57651 5.75884 5.87612 5.88286 5.90050 5.94956 6.00466 6.03369 6.10184 6.11892 6.30359 6.36799 6.47970 6.54603 6.58205 6.64497 6.72973 6.82860 6.97312 7.44635 7.58277 7.65567 7.84785 7.86849 8.21375 8.28602 9.24942 9.85387 10.52455 11.42599 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.002929 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.674577 B = 9557.030165 C =10634.145094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.143 3.857 3 N -0.487 5.487 4 C 0.099 3.901 5 C -0.178 4.178 6 C -0.059 4.059 7 C -0.115 4.115 8 C -0.099 4.099 9 C 0.516 3.484 10 O -0.532 6.532 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.137 4.137 14 C -0.096 4.096 15 C -0.086 4.086 16 C -0.134 4.134 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.224 4.224 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.152 3.848 28 C 0.130 3.870 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.045 0.955 47 H 0.251 0.749 48 H 0.036 0.964 49 H 0.015 0.985 50 H 0.091 0.909 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 13.944 15.966 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 N -0.196 5.196 4 C -0.058 4.058 5 C -0.198 4.198 6 C -0.085 4.085 7 C -0.117 4.117 8 C -0.139 4.139 9 C 0.304 3.696 10 O -0.408 6.408 11 N -0.340 5.340 12 C -0.016 4.016 13 C -0.175 4.175 14 C -0.133 4.133 15 C -0.088 4.088 16 C -0.173 4.173 17 C 0.056 3.944 18 N -0.330 5.330 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.026 3.974 28 C 0.008 3.992 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.033 0.967 50 H 0.109 0.891 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.007 14.933 15.348 22.531 hybrid contribution 1.506 -1.536 -0.138 2.155 sum -5.502 13.397 15.210 21.002 Atomic orbital electron populations 1.20736 0.89183 1.03731 1.02604 1.21026 0.96772 0.87731 0.93922 1.67510 1.10110 1.29053 1.12940 1.22696 0.89475 0.98413 0.95199 1.22078 1.01457 0.93352 1.02917 1.21481 0.93614 0.98729 0.94690 1.20098 0.94242 0.94879 1.02476 1.20670 1.01855 0.95623 0.95801 1.20345 0.77705 0.80818 0.90774 1.90736 1.53299 1.50993 1.45818 1.48150 1.55894 1.21678 1.08297 1.21779 0.99904 0.90817 0.89103 1.21989 1.02222 0.94983 0.98287 1.21220 0.99148 1.00252 0.92702 1.21436 0.98141 0.93230 0.95994 1.22868 0.99856 1.00069 0.94526 1.21127 0.84048 0.94284 0.94967 1.44509 1.12989 1.30193 1.45337 1.19030 0.90534 1.06544 1.19179 0.90720 1.24771 0.97881 0.98819 0.99011 1.69963 1.30356 1.28554 1.28145 0.86152 0.82887 0.80030 0.76914 1.21687 1.21704 1.20783 1.21448 0.90946 0.90637 0.94346 1.21509 0.99264 0.96007 0.82427 0.90439 0.90326 0.90924 0.82871 0.84788 0.84833 0.87720 0.87758 0.91329 0.90199 0.90987 0.90837 0.92658 0.90271 0.92378 0.91984 0.94190 0.93635 0.93846 0.94568 0.96747 0.89052 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.39 36.01 0.34 -0.68 16 2 C 0.14 1.75 6.78 -82.59 -0.56 1.19 16 3 N -0.49 -6.26 10.27 -9.47 -0.10 -6.36 16 4 C 0.10 1.07 11.18 -17.54 -0.20 0.88 16 5 C -0.18 -1.81 10.11 -39.44 -0.40 -2.20 16 6 C -0.06 -0.66 9.84 -39.27 -0.39 -1.04 16 7 C -0.11 -1.33 4.39 -104.48 -0.46 -1.79 16 8 C -0.10 -0.96 3.51 -29.04 -0.10 -1.06 16 9 C 0.52 6.96 6.90 -10.99 -0.08 6.88 16 10 O -0.53 -9.48 15.46 5.55 0.09 -9.40 16 11 N -0.61 -7.62 2.87 -173.22 -0.50 -8.12 16 12 C 0.11 1.01 6.32 -3.71 -0.02 0.98 16 13 C -0.14 -1.60 5.91 -26.54 -0.16 -1.75 16 14 C -0.10 -1.40 4.64 -27.11 -0.13 -1.53 16 15 C -0.09 -1.43 0.55 -153.98 -0.08 -1.52 16 16 C -0.13 -2.45 5.91 -25.13 -0.15 -2.60 16 17 C 0.18 4.34 5.02 -2.95 -0.01 4.33 16 18 N -0.60 -15.36 3.39 -170.31 -0.58 -15.93 16 19 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 20 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -27.10 10.30 55.49 0.57 -26.53 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.15 3.19 5.96 -2.88 -0.02 3.17 16 28 C 0.13 1.89 5.12 -4.11 -0.02 1.87 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.70 6.14 -51.93 -0.32 0.38 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.10 0.74 6.81 -51.93 -0.35 0.38 16 36 H 0.10 0.83 7.63 -51.93 -0.40 0.44 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.55 5.95 -51.93 -0.31 0.24 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.01 6.33 -51.93 -0.33 0.68 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 43 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 44 H 0.06 1.00 8.01 -51.93 -0.42 0.59 16 45 H 0.04 1.08 7.50 -51.93 -0.39 0.70 16 46 H 0.05 1.20 7.37 -51.93 -0.38 0.82 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.04 0.75 6.10 -51.93 -0.32 0.43 16 49 H 0.01 0.34 7.87 -51.93 -0.41 -0.07 16 50 H 0.09 1.55 6.84 -51.93 -0.36 1.19 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -34.53 392.07 -10.46 -44.99 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.15 Total: -0.10 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.68 Total: -1.66 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.60 Total: -56.95 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.53 -10.46 -44.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.481 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds