Wall clock time and date at job start Wed Apr 1 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38349 * 119.45990 * 2 1 4 4 C 1.38358 * 119.30430 * 179.72370 * 3 2 1 5 5 C 1.40023 * 118.28631 * 0.52301 * 4 3 2 6 6 C 1.47838 * 120.55886 * 179.73389 * 5 4 3 7 7 O 1.21557 * 119.99874 * 125.98748 * 6 5 4 8 8 N 1.34770 * 120.00152 * 305.98193 * 6 5 4 9 9 C 1.46947 * 120.71722 * 354.26633 * 8 6 5 10 10 C 1.53191 * 108.90038 * 234.30349 * 9 8 6 11 11 C 1.53173 * 109.27943 * 304.61656 * 10 9 8 12 12 C 1.52063 * 109.73360 * 59.92904 * 11 10 9 13 13 C 1.54574 * 110.68130 * 64.31292 * 12 11 10 14 14 C 1.54467 * 102.76183 * 152.61530 * 13 12 11 15 15 N 1.47071 * 107.42735 * 338.69373 * 14 13 12 16 16 C 1.36937 * 125.62977 * 178.90681 * 15 14 13 17 17 H 1.08007 * 119.99984 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00231 * 0.02641 * 16 15 14 19 19 N 1.31623 * 119.99750 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00538 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47274 * 89.99554 * 20 18 16 22 22 H 1.48502 * 109.47473 * 210.00040 * 20 18 16 23 23 H 1.48506 * 109.46936 * 329.99760 * 20 18 16 24 24 C 1.47578 * 108.74603 * 358.93092 * 15 14 13 25 25 C 1.47100 * 120.72041 * 174.24363 * 8 6 5 26 26 C 1.39524 * 118.88340 * 359.45988 * 5 4 3 27 27 C 1.50699 * 119.72083 * 180.27093 * 26 5 4 28 28 N 1.31694 * 120.56274 * 0.29969 * 26 5 4 29 29 H 1.09000 * 109.46894 * 270.01592 * 1 2 3 30 30 H 1.09001 * 109.47567 * 30.01481 * 1 2 3 31 31 H 1.09005 * 109.47230 * 150.01929 * 1 2 3 32 32 H 1.08001 * 120.35004 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.85900 * 180.26364 * 4 3 2 34 34 H 1.08998 * 109.56612 * 114.48167 * 9 8 6 35 35 H 1.08997 * 109.66025 * 354.18743 * 9 8 6 36 36 H 1.08996 * 109.50252 * 184.67383 * 10 9 8 37 37 H 1.08997 * 109.53270 * 64.57869 * 10 9 8 38 38 H 1.09001 * 109.42900 * 299.84773 * 11 10 9 39 39 H 1.08997 * 109.38566 * 179.97438 * 11 10 9 40 40 H 1.09001 * 110.70729 * 34.34155 * 13 12 11 41 41 H 1.09006 * 110.86151 * 270.96236 * 13 12 11 42 42 H 1.09004 * 109.87432 * 219.19254 * 14 13 12 43 43 H 1.08995 * 109.87471 * 98.20052 * 14 13 12 44 44 H 0.96997 * 120.00132 * 179.97438 * 19 18 16 45 45 H 1.08992 * 110.38334 * 142.11881 * 24 15 14 46 46 H 1.08998 * 110.37431 * 264.46761 * 24 15 14 47 47 H 1.09005 * 109.56920 * 7.97640 * 25 8 6 48 48 H 1.08998 * 109.57022 * 247.62222 * 25 8 6 49 49 H 1.08999 * 109.46839 * 94.86243 * 27 26 5 50 50 H 1.09000 * 109.47258 * 214.86415 * 27 26 5 51 51 H 1.08999 * 109.46918 * 334.86730 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0058 5 6 4.2312 -0.0339 0.0003 6 6 5.7082 -0.0965 0.0002 7 8 6.2892 -0.7442 0.8491 8 7 6.4107 0.5644 -0.9412 9 6 5.7257 1.2481 -2.0469 10 6 6.3015 0.7448 -3.3743 11 6 7.8200 0.9461 -3.3755 12 6 8.4418 0.1693 -2.2256 13 6 8.2338 -1.3503 -2.4177 14 6 9.4382 -1.9574 -1.6648 15 7 10.4689 -0.9128 -1.5675 16 6 11.6842 -1.0463 -0.9508 17 1 12.3749 -0.2161 -0.9331 18 6 12.0287 -2.2486 -0.3486 19 7 11.1868 -3.2602 -0.3698 20 14 13.6862 -2.4305 0.4932 21 1 13.5628 -2.0370 1.9197 22 1 14.1330 -3.8441 0.4065 23 1 14.6808 -1.5551 -0.1775 24 6 9.9770 0.3033 -2.2436 25 6 7.8796 0.6173 -0.8837 26 6 3.4716 -1.2043 0.0007 27 6 4.1627 -2.5435 0.0009 28 7 2.1559 -1.1487 0.0002 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5136 32 1 1.6443 2.1381 -0.0004 33 1 4.1274 2.1265 0.0102 34 1 5.8836 2.3234 -1.9649 35 1 4.6582 1.0318 -2.0067 36 1 5.8596 1.3049 -4.1983 37 1 6.0748 -0.3148 -3.4915 38 1 8.0453 2.0063 -3.2606 39 1 8.2316 0.5881 -4.3191 40 1 8.2673 -1.6132 -3.4750 41 1 7.2948 -1.6734 -1.9681 42 1 9.8279 -2.8124 -2.2173 43 1 9.1318 -2.2700 -0.6666 44 1 11.4276 -4.1004 0.0507 45 1 10.2868 1.1935 -1.6964 46 1 10.3426 0.3411 -3.2698 47 1 8.2384 -0.0470 -0.0975 48 1 8.2003 1.6381 -0.6760 49 1 4.2520 -2.9060 1.0250 50 1 3.5799 -3.2532 -0.5862 51 1 5.1560 -2.4398 -0.4357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054242524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:54 Heat of formation + Delta-G solvation = 23.394683 kcal Electronic energy + Delta-G solvation = -31537.939454 eV Core-core repulsion = 27630.563195 eV Total energy + Delta-G solvation = -3907.376259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.09783 -39.86188 -38.13969 -35.89733 -33.83703 -33.48219 -32.63134 -31.89490 -29.92157 -29.28191 -28.62506 -27.65390 -25.62649 -25.30808 -23.69177 -22.95782 -22.28364 -21.82821 -20.23135 -19.72374 -18.21623 -17.34337 -16.88286 -16.68999 -16.09217 -15.62499 -15.09700 -14.99305 -14.69642 -14.43297 -14.36448 -13.93774 -13.69640 -13.53359 -13.39542 -13.36317 -13.14076 -12.90318 -12.55992 -12.44355 -12.29667 -12.18118 -12.07336 -12.04195 -11.88636 -11.62317 -11.17801 -11.01773 -10.82316 -10.78434 -10.56089 -10.13894 -10.09966 -10.00145 -9.90263 -9.88041 -9.63575 -9.54619 -9.44278 -8.96376 -8.51371 -8.45663 -6.74458 -5.62368 -2.96153 0.61846 0.98054 2.71094 3.02587 3.45526 3.49849 3.50415 3.52078 3.92560 4.38552 4.40568 4.51907 4.56019 4.74884 4.77861 4.94890 4.98916 5.11262 5.18799 5.19238 5.26242 5.31974 5.34864 5.41034 5.52672 5.54906 5.59694 5.66031 5.68124 5.71085 5.77148 5.83302 5.92917 5.98173 6.00241 6.04886 6.09162 6.14945 6.27733 6.33710 6.42539 6.48498 6.52846 6.62725 6.74481 6.80208 6.92517 7.48649 7.64540 7.74417 7.74941 7.93949 8.25389 8.34751 9.30118 9.90702 10.56931 11.48830 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.003091 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.961805 B = 9057.524004 C = 9921.544781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.180 4.180 6 C 0.562 3.438 7 O -0.515 6.515 8 N -0.601 5.601 9 C 0.106 3.894 10 C -0.133 4.133 11 C -0.101 4.101 12 C -0.086 4.086 13 C -0.127 4.127 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.149 3.851 25 C 0.134 3.866 26 C 0.184 3.816 27 C -0.108 4.108 28 N -0.487 5.487 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.251 0.749 45 H 0.038 0.962 46 H 0.021 0.979 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.417 11.485 -4.732 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.206 4.206 4 C -0.065 4.065 5 C -0.185 4.185 6 C 0.348 3.652 7 O -0.390 6.390 8 N -0.334 5.334 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.139 4.139 12 C -0.088 4.088 13 C -0.166 4.166 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.357 4.357 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.022 3.978 25 C 0.013 3.987 26 C 0.046 3.954 27 C -0.165 4.165 28 N -0.197 5.197 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.097 0.903 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.433 10.177 -4.146 24.086 hybrid contribution 1.351 0.790 0.402 1.616 sum -20.082 10.967 -3.744 23.186 Atomic orbital electron populations 1.20758 0.88593 1.03633 1.03287 1.21461 0.97160 0.88250 0.92479 1.21835 0.94378 0.99411 1.05008 1.21688 0.94457 0.97167 0.93200 1.20827 0.94851 0.94997 1.07824 1.18055 0.86003 0.79263 0.81889 1.90880 1.70592 1.39926 1.37614 1.48100 1.07682 1.52446 1.25165 1.21788 0.96807 0.96536 0.86584 1.21918 0.96768 1.02211 0.96194 1.21321 0.94135 0.99902 0.98569 1.21447 0.97029 0.96519 0.93794 1.22818 1.00086 0.93757 0.99918 1.21154 0.84968 0.90407 0.98054 1.44505 1.15973 1.08284 1.64280 1.19013 0.91344 0.97530 1.27836 0.90572 1.24793 0.98329 0.96179 1.01059 1.69977 1.34806 1.03026 1.48741 0.86154 0.83394 0.76888 0.79516 1.21647 1.21758 1.20802 1.21414 0.89378 0.91256 0.95768 1.21481 0.76588 1.01594 0.99031 1.21386 0.88573 0.95118 0.90303 1.20826 1.00024 0.91514 1.04134 1.67426 1.08945 1.29098 1.14251 0.90157 0.90531 0.90259 0.84336 0.84321 0.91446 0.90309 0.91091 0.91245 0.92111 0.91480 0.92770 0.92599 0.94330 0.93393 0.93826 0.94424 0.96095 0.87528 0.91978 0.89356 0.90325 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 36.01 0.37 -0.32 16 2 C 0.14 1.44 6.78 -82.51 -0.56 0.88 16 3 C -0.19 -1.61 9.72 -39.50 -0.38 -2.00 16 4 C -0.04 -0.40 7.93 -38.87 -0.31 -0.71 16 5 C -0.18 -2.40 4.62 -104.82 -0.48 -2.88 16 6 C 0.56 9.03 6.12 -12.34 -0.08 8.96 16 7 O -0.51 -10.56 15.38 5.32 0.08 -10.48 16 8 N -0.60 -8.63 2.60 -174.31 -0.45 -9.08 16 9 C 0.11 1.11 5.62 -3.70 -0.02 1.09 16 10 C -0.13 -1.41 5.92 -26.54 -0.16 -1.57 16 11 C -0.10 -1.28 4.64 -27.12 -0.13 -1.41 16 12 C -0.09 -1.44 0.56 -153.97 -0.09 -1.53 16 13 C -0.13 -2.44 4.92 -25.13 -0.12 -2.57 16 14 C 0.18 4.48 4.95 -2.96 -0.01 4.46 16 15 N -0.60 -15.52 3.39 -170.32 -0.58 -16.09 16 16 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 17 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -27.81 10.31 55.49 0.57 -27.24 16 20 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.15 3.01 6.15 -2.87 -0.02 2.99 16 25 C 0.13 2.28 5.08 -4.11 -0.02 2.26 16 26 C 0.18 2.53 6.82 -82.17 -0.56 1.97 16 27 C -0.11 -1.47 9.45 36.01 0.34 -1.13 16 28 N -0.49 -6.20 10.17 -5.42 -0.06 -6.26 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.14 1.14 7.82 -52.49 -0.41 0.73 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.76 5.37 -51.93 -0.28 0.48 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.83 7.42 -51.93 -0.39 0.45 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 41 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 42 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 43 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.04 0.74 8.01 -51.93 -0.42 0.32 16 46 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 47 H 0.11 2.31 6.61 -51.93 -0.34 1.97 16 48 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 49 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 51 H 0.08 1.25 6.56 -51.93 -0.34 0.91 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -33.97 393.74 -10.37 -44.34 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.37 Total: -0.39 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.48 Total: 1.58 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.51 Total: -58.67 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.97 -10.37 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054242524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.735 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds