Wall clock time and date at job start Wed Apr 1 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38349 * 119.45990 * 2 1 4 4 C 1.38358 * 119.30430 * 179.72370 * 3 2 1 5 5 C 1.40023 * 118.28631 * 0.52301 * 4 3 2 6 6 C 1.47838 * 120.55886 * 179.73389 * 5 4 3 7 7 O 1.21557 * 119.99874 * 125.98748 * 6 5 4 8 8 N 1.34770 * 120.00152 * 305.98193 * 6 5 4 9 9 C 1.46947 * 120.71722 * 354.26633 * 8 6 5 10 10 C 1.53191 * 108.90038 * 234.30349 * 9 8 6 11 11 C 1.53173 * 109.27943 * 304.61656 * 10 9 8 12 12 C 1.52063 * 109.73360 * 59.92904 * 11 10 9 13 13 C 1.54574 * 110.68130 * 64.31292 * 12 11 10 14 14 C 1.54467 * 102.76183 * 152.61530 * 13 12 11 15 15 N 1.47071 * 107.42735 * 338.69373 * 14 13 12 16 16 C 1.36937 * 125.62977 * 178.90681 * 15 14 13 17 17 H 1.08007 * 119.99984 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00231 * 0.02641 * 16 15 14 19 19 N 1.31623 * 119.99750 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00538 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47274 * 89.99554 * 20 18 16 22 22 H 1.48502 * 109.47473 * 210.00040 * 20 18 16 23 23 H 1.48506 * 109.46936 * 329.99760 * 20 18 16 24 24 C 1.47578 * 108.74603 * 358.93092 * 15 14 13 25 25 C 1.47100 * 120.72041 * 174.24363 * 8 6 5 26 26 C 1.39524 * 118.88340 * 359.45988 * 5 4 3 27 27 C 1.50699 * 119.72083 * 180.27093 * 26 5 4 28 28 N 1.31694 * 120.56274 * 0.29969 * 26 5 4 29 29 H 1.09000 * 109.46894 * 270.01592 * 1 2 3 30 30 H 1.09001 * 109.47567 * 30.01481 * 1 2 3 31 31 H 1.09005 * 109.47230 * 150.01929 * 1 2 3 32 32 H 1.08001 * 120.35004 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.85900 * 180.26364 * 4 3 2 34 34 H 1.08998 * 109.56612 * 114.48167 * 9 8 6 35 35 H 1.08997 * 109.66025 * 354.18743 * 9 8 6 36 36 H 1.08996 * 109.50252 * 184.67383 * 10 9 8 37 37 H 1.08997 * 109.53270 * 64.57869 * 10 9 8 38 38 H 1.09001 * 109.42900 * 299.84773 * 11 10 9 39 39 H 1.08997 * 109.38566 * 179.97438 * 11 10 9 40 40 H 1.09001 * 110.70729 * 34.34155 * 13 12 11 41 41 H 1.09006 * 110.86151 * 270.96236 * 13 12 11 42 42 H 1.09004 * 109.87432 * 219.19254 * 14 13 12 43 43 H 1.08995 * 109.87471 * 98.20052 * 14 13 12 44 44 H 0.96997 * 120.00132 * 179.97438 * 19 18 16 45 45 H 1.08992 * 110.38334 * 142.11881 * 24 15 14 46 46 H 1.08998 * 110.37431 * 264.46761 * 24 15 14 47 47 H 1.09005 * 109.56920 * 7.97640 * 25 8 6 48 48 H 1.08998 * 109.57022 * 247.62222 * 25 8 6 49 49 H 1.08999 * 109.46839 * 94.86243 * 27 26 5 50 50 H 1.09000 * 109.47258 * 214.86415 * 27 26 5 51 51 H 1.08999 * 109.46918 * 334.86730 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0058 5 6 4.2312 -0.0339 0.0003 6 6 5.7082 -0.0965 0.0002 7 8 6.2892 -0.7442 0.8491 8 7 6.4107 0.5644 -0.9412 9 6 5.7257 1.2481 -2.0469 10 6 6.3015 0.7448 -3.3743 11 6 7.8200 0.9461 -3.3755 12 6 8.4418 0.1693 -2.2256 13 6 8.2338 -1.3503 -2.4177 14 6 9.4382 -1.9574 -1.6648 15 7 10.4689 -0.9128 -1.5675 16 6 11.6842 -1.0463 -0.9508 17 1 12.3749 -0.2161 -0.9331 18 6 12.0287 -2.2486 -0.3486 19 7 11.1868 -3.2602 -0.3698 20 14 13.6862 -2.4305 0.4932 21 1 13.5628 -2.0370 1.9197 22 1 14.1330 -3.8441 0.4065 23 1 14.6808 -1.5551 -0.1775 24 6 9.9770 0.3033 -2.2436 25 6 7.8796 0.6173 -0.8837 26 6 3.4716 -1.2043 0.0007 27 6 4.1627 -2.5435 0.0009 28 7 2.1559 -1.1487 0.0002 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5136 32 1 1.6443 2.1381 -0.0004 33 1 4.1274 2.1265 0.0102 34 1 5.8836 2.3234 -1.9649 35 1 4.6582 1.0318 -2.0067 36 1 5.8596 1.3049 -4.1983 37 1 6.0748 -0.3148 -3.4915 38 1 8.0453 2.0063 -3.2606 39 1 8.2316 0.5881 -4.3191 40 1 8.2673 -1.6132 -3.4750 41 1 7.2948 -1.6734 -1.9681 42 1 9.8279 -2.8124 -2.2173 43 1 9.1318 -2.2700 -0.6666 44 1 11.4276 -4.1004 0.0507 45 1 10.2868 1.1935 -1.6964 46 1 10.3426 0.3411 -3.2698 47 1 8.2384 -0.0470 -0.0975 48 1 8.2003 1.6381 -0.6760 49 1 4.2520 -2.9060 1.0250 50 1 3.5799 -3.2532 -0.5862 51 1 5.1560 -2.4398 -0.4357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054242524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:53 Heat of formation + Delta-G solvation = 1.941910 kcal Electronic energy + Delta-G solvation = -31538.869716 eV Core-core repulsion = 27630.563195 eV Total energy + Delta-G solvation = -3908.306521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14016 -41.00208 -39.52341 -37.37420 -34.98767 -34.64083 -33.85328 -33.19727 -31.59535 -30.42989 -30.07873 -28.67678 -27.31620 -26.38230 -25.43979 -23.77273 -23.23296 -22.97117 -22.06600 -20.96075 -19.63384 -18.61529 -18.40130 -17.84001 -17.25043 -16.83419 -16.56842 -16.26869 -15.99369 -15.71906 -15.46079 -15.34872 -15.09283 -14.61282 -14.48343 -14.23803 -14.18218 -14.02637 -13.98191 -13.76893 -13.52256 -13.36692 -13.28558 -13.02298 -12.98858 -12.96062 -12.85923 -12.78080 -12.34806 -12.13941 -12.02634 -11.90812 -11.80641 -11.59676 -11.34607 -11.16319 -11.09587 -10.77180 -10.71646 -10.47158 -9.85192 -9.62471 -8.89165 -7.84322 -5.20197 -0.25423 0.17509 1.41678 1.45157 1.53318 1.53948 1.91257 2.48486 2.63125 3.10464 3.33444 3.38946 3.58811 3.65166 3.70884 3.74436 3.84551 3.91060 4.03693 4.12156 4.21304 4.31082 4.33631 4.48010 4.51623 4.53692 4.55747 4.56311 4.62914 4.72798 4.73743 4.82716 4.83578 4.87926 4.90946 4.96089 4.99009 5.02589 5.06240 5.11172 5.16093 5.19734 5.23020 5.43014 5.45310 5.49081 5.52409 5.64777 5.65742 5.76427 6.18862 6.34571 6.90192 7.06648 7.08888 7.78274 8.43281 9.26044 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.003091 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.961805 B = 9057.524004 C = 9921.544781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.137 3.863 3 C -0.168 4.168 4 C -0.033 4.033 5 C -0.197 4.197 6 C 0.559 3.441 7 O -0.578 6.578 8 N -0.595 5.595 9 C 0.101 3.899 10 C -0.128 4.128 11 C -0.095 4.095 12 C -0.070 4.070 13 C -0.110 4.110 14 C 0.193 3.807 15 N -0.625 5.625 16 C -0.238 4.238 17 H 0.087 0.913 18 C -0.073 4.073 19 N -0.954 5.954 20 Si 0.979 3.021 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.262 1.262 24 C 0.142 3.858 25 C 0.140 3.860 26 C 0.163 3.837 27 C -0.102 4.102 28 N -0.508 5.508 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.050 0.950 42 H -0.002 1.002 43 H -0.006 1.006 44 H 0.243 0.757 45 H 0.048 0.952 46 H 0.035 0.965 47 H 0.047 0.953 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.090 0.910 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.963 16.085 -6.727 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.001 4.001 3 C -0.187 4.187 4 C -0.059 4.059 5 C -0.202 4.202 6 C 0.347 3.653 7 O -0.458 6.458 8 N -0.326 5.326 9 C -0.020 4.020 10 C -0.166 4.166 11 C -0.133 4.133 12 C -0.072 4.072 13 C -0.148 4.148 14 C 0.068 3.932 15 N -0.351 5.351 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.266 4.266 19 N -0.603 5.603 20 Si 0.807 3.193 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.187 1.187 24 C 0.017 3.983 25 C 0.018 3.982 26 C 0.026 3.974 27 C -0.159 4.159 28 N -0.219 5.219 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.201 0.799 33 H 0.182 0.818 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.109 0.891 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.999 14.846 -6.202 28.893 hybrid contribution 2.051 -0.588 1.024 2.367 sum -21.948 14.258 -5.178 26.680 Atomic orbital electron populations 1.20887 0.85942 1.04953 1.04260 1.22204 0.98929 0.88032 0.90951 1.22291 0.93647 1.00581 1.02204 1.21993 0.95378 0.96475 0.92048 1.20612 0.92730 0.96516 1.10351 1.18587 0.87352 0.78183 0.81197 1.90848 1.72073 1.42644 1.40254 1.48155 1.06518 1.52090 1.25873 1.22163 0.97171 0.97923 0.84745 1.21931 0.95260 1.01880 0.97543 1.21316 0.95255 1.00546 0.96160 1.21380 0.95020 0.94922 0.95846 1.22596 0.96794 0.95789 0.99629 1.20767 0.87074 0.90020 0.95347 1.44801 1.15465 1.10377 1.64460 1.19494 0.92436 0.97645 1.27119 0.89503 1.25722 1.02160 0.96152 1.02533 1.70250 1.36765 1.03256 1.50058 0.85071 0.79425 0.76637 0.78186 1.21689 1.22281 1.18680 1.21694 0.91665 0.89249 0.95696 1.21184 0.78605 1.01151 0.97267 1.21227 0.89363 0.94758 0.92077 1.20673 0.98945 0.93034 1.03287 1.67427 1.08206 1.31053 1.15205 0.89181 0.87354 0.90842 0.79870 0.81771 0.87983 0.88895 0.87014 0.93110 0.89305 0.90850 0.91043 0.93119 0.98394 0.98749 0.94789 0.93406 0.94688 0.93472 0.89820 0.90670 0.89125 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.16 71.24 0.72 -0.22 16 2 C 0.14 2.31 6.78 42.57 0.29 2.60 16 3 C -0.17 -2.12 9.72 22.32 0.22 -1.90 16 4 C -0.03 -0.56 7.93 22.73 0.18 -0.38 16 5 C -0.20 -5.18 4.62 -19.99 -0.09 -5.27 16 6 C 0.56 18.73 6.12 86.79 0.53 19.26 16 7 O -0.58 -26.16 15.38 -3.89 -0.06 -26.22 16 8 N -0.59 -16.72 2.60 -823.68 -2.14 -18.86 16 9 C 0.10 1.72 5.62 86.36 0.49 2.21 16 10 C -0.13 -2.18 5.92 30.72 0.18 -2.00 16 11 C -0.10 -2.03 4.64 30.34 0.14 -1.89 16 12 C -0.07 -2.30 0.56 -51.83 -0.03 -2.33 16 13 C -0.11 -4.39 4.92 31.63 0.16 -4.24 16 14 C 0.19 10.51 4.95 86.77 0.43 10.94 16 15 N -0.62 -33.55 3.39 -692.77 -2.35 -35.90 16 16 C -0.24 -13.92 10.28 84.03 0.86 -13.06 16 17 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 18 C -0.07 -4.43 5.49 84.86 0.47 -3.97 16 19 N -0.95 -62.09 10.31 21.65 0.22 -61.86 16 20 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 21 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.14 5.69 6.15 86.55 0.53 6.22 16 25 C 0.14 4.82 5.08 86.01 0.44 5.26 16 26 C 0.16 4.60 6.82 42.89 0.29 4.90 16 27 C -0.10 -3.10 9.45 71.24 0.67 -2.43 16 28 N -0.51 -12.54 10.17 -171.06 -1.74 -14.28 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.33 8.07 -2.39 -0.02 0.31 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.16 1.90 7.82 -2.91 -0.02 1.88 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.40 5.37 -2.39 -0.01 1.38 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.08 7.42 -2.39 -0.02 1.06 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 40 H 0.07 2.60 7.99 -2.39 -0.02 2.58 16 41 H 0.05 2.07 7.70 -2.38 -0.02 2.05 16 42 H 0.00 -0.13 7.50 -2.38 -0.02 -0.15 16 43 H -0.01 -0.37 7.37 -2.39 -0.02 -0.39 16 44 H 0.24 15.46 8.31 -92.71 -0.77 14.68 16 45 H 0.05 1.82 8.01 -2.39 -0.02 1.80 16 46 H 0.04 1.34 8.00 -2.39 -0.02 1.32 16 47 H 0.05 2.21 6.61 -2.38 -0.02 2.20 16 48 H 0.08 2.49 8.12 -2.39 -0.02 2.47 16 49 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 51 H 0.05 1.90 6.56 -2.39 -0.02 1.88 16 Total: -1.00 -85.28 393.74 3.36 -81.93 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.91 Total: 11.01 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.48 Total: 13.69 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -6.00 Total: -130.90 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.06 Total: -26.22 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -85.28 3.36 -81.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054242524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.871 kcal (2) G-P(sol) polarization free energy of solvation -85.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds