Wall clock time and date at job start Wed Apr 1 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38347 * 119.46446 * 2 1 4 4 C 1.38362 * 119.30354 * 179.71738 * 3 2 1 5 5 C 1.40019 * 118.28637 * 0.52176 * 4 3 2 6 6 C 1.47840 * 120.55637 * 179.72998 * 5 4 3 7 7 O 1.21553 * 120.00359 * 235.05688 * 6 5 4 8 8 N 1.34777 * 119.99998 * 55.05964 * 6 5 4 9 9 C 1.46931 * 120.69979 * 355.93117 * 8 6 5 10 10 C 1.53195 * 108.92168 * 125.85064 * 9 8 6 11 11 C 1.53169 * 109.26798 * 55.23343 * 10 9 8 12 12 C 1.52234 * 109.66358 * 299.82214 * 11 10 9 13 13 C 1.54502 * 110.24958 * 297.05952 * 12 11 10 14 14 C 1.55026 * 101.51946 * 276.22992 * 13 12 11 15 15 N 1.47488 * 104.90245 * 323.64346 * 14 13 12 16 16 C 1.36933 * 125.66047 * 204.04041 * 15 14 13 17 17 H 1.07996 * 120.00190 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00421 * 359.96438 * 16 15 14 19 19 N 1.31627 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00352 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46840 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47177 * 120.00138 * 20 18 16 23 23 H 1.48505 * 109.46869 * 239.99963 * 20 18 16 24 24 C 1.47192 * 108.67638 * 24.00976 * 15 14 13 25 25 C 1.47074 * 120.70381 * 175.95619 * 8 6 5 26 26 C 1.39516 * 118.88382 * 359.46039 * 5 4 3 27 27 C 1.50702 * 119.71941 * 180.27036 * 26 5 4 28 28 N 1.31699 * 120.56815 * 0.30035 * 26 5 4 29 29 H 1.08996 * 109.47343 * 270.02097 * 1 2 3 30 30 H 1.09003 * 109.46656 * 30.02089 * 1 2 3 31 31 H 1.08996 * 109.46919 * 150.01495 * 1 2 3 32 32 H 1.07999 * 120.34740 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.85168 * 180.25840 * 4 3 2 34 34 H 1.09005 * 109.56345 * 6.02521 * 9 8 6 35 35 H 1.08998 * 109.56537 * 245.68168 * 9 8 6 36 36 H 1.08999 * 109.50549 * 295.29919 * 10 9 8 37 37 H 1.08998 * 109.53777 * 175.19701 * 10 9 8 38 38 H 1.08999 * 109.43327 * 179.76220 * 11 10 9 39 39 H 1.09005 * 109.40360 * 59.86641 * 11 10 9 40 40 H 1.08999 * 111.01534 * 34.28970 * 13 12 11 41 41 H 1.09000 * 111.01260 * 158.17169 * 13 12 11 42 42 H 1.09001 * 110.35028 * 204.79021 * 14 13 12 43 43 H 1.08996 * 110.44886 * 82.54758 * 14 13 12 44 44 H 0.96996 * 119.99843 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.90659 * 239.12790 * 24 15 14 46 46 H 1.09001 * 109.90968 * 117.85690 * 24 15 14 47 47 H 1.08993 * 109.58111 * 112.61655 * 25 8 6 48 48 H 1.09007 * 109.57342 * 352.22340 * 25 8 6 49 49 H 1.08997 * 109.46695 * 94.22931 * 27 26 5 50 50 H 1.08998 * 109.47644 * 214.23186 * 27 26 5 51 51 H 1.09005 * 109.46765 * 334.23846 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5711 1.2007 0.0060 5 6 4.2312 -0.0342 0.0006 6 6 5.7083 -0.0968 0.0005 7 8 6.2902 -0.7211 -0.8651 8 7 6.4098 0.5382 0.9603 9 6 5.7281 1.3698 1.9616 10 6 6.1332 0.8950 3.3607 11 6 7.6602 0.9157 3.4790 12 6 8.2674 -0.0125 2.4363 13 6 7.8248 -1.4699 2.6952 14 6 8.8529 -1.9205 3.7644 15 7 10.1143 -1.2599 3.3798 16 6 11.3724 -1.6868 3.7114 17 1 12.2364 -1.1306 3.3791 18 6 11.5373 -2.8343 4.4748 19 7 10.4842 -3.5119 4.8805 20 14 13.2536 -3.4171 4.9266 21 1 14.2591 -2.4875 4.3521 22 1 13.3934 -3.4464 6.4047 23 1 13.4727 -4.7810 4.3815 24 6 9.7962 -0.0661 2.5797 25 6 7.8737 0.4139 1.0271 26 6 3.4716 -1.2044 0.0010 27 6 4.1626 -2.5437 0.0014 28 7 2.1558 -1.1488 0.0004 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5136 32 1 1.6445 2.1381 -0.0004 33 1 4.1275 2.1262 0.0103 34 1 4.6489 1.2740 1.8421 35 1 6.0205 2.4117 1.8310 36 1 5.7697 -0.1201 3.5200 37 1 5.7010 1.5582 4.1100 38 1 7.9513 0.5823 4.4751 39 1 8.0223 1.9309 3.3160 40 1 6.8093 -1.5058 3.0898 41 1 7.9124 -2.0716 1.7906 42 1 8.9708 -3.0039 3.7441 43 1 8.5401 -1.5924 4.7556 44 1 10.5994 -4.3135 5.4142 45 1 10.2588 -0.1446 1.5959 46 1 10.1528 0.8286 3.0901 47 1 8.3329 1.3746 0.7946 48 1 8.2096 -0.3365 0.3113 49 1 4.2618 -2.9009 1.0264 50 1 3.5742 -3.2564 -0.5764 51 1 5.1517 -2.4422 -0.4454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054242525.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:58 Heat of formation + Delta-G solvation = 26.653351 kcal Electronic energy + Delta-G solvation = -31295.765957 eV Core-core repulsion = 27388.531005 eV Total energy + Delta-G solvation = -3907.234952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.20176 -39.92175 -38.30993 -35.96448 -33.89506 -33.54764 -32.67012 -31.90340 -30.13925 -29.31874 -28.65632 -27.64229 -25.72114 -25.33812 -23.63444 -23.05787 -22.31059 -22.06354 -20.28031 -19.73888 -18.17392 -17.45640 -16.97227 -16.77391 -16.22306 -15.70859 -15.13788 -15.04223 -14.74793 -14.68917 -14.43839 -14.03109 -13.64658 -13.56983 -13.43591 -13.31954 -13.27578 -13.02964 -12.59955 -12.59332 -12.34133 -12.21298 -12.15825 -12.01835 -11.93450 -11.54005 -11.20693 -10.99389 -10.90433 -10.77561 -10.55959 -10.24397 -10.10912 -10.04593 -10.01731 -9.89664 -9.69340 -9.54536 -9.43645 -9.02073 -8.62208 -8.53665 -6.80112 -5.62651 -3.04013 0.55937 0.92133 2.54491 2.91563 3.41087 3.43059 3.46598 3.49074 3.88460 4.28537 4.34881 4.44347 4.50880 4.71632 4.74439 4.95546 4.96280 5.09063 5.14255 5.15770 5.23516 5.27713 5.29687 5.36623 5.49011 5.51084 5.54784 5.59920 5.63517 5.68255 5.70594 5.83769 5.88934 5.91811 5.93574 5.98460 6.05876 6.11043 6.27626 6.38356 6.39443 6.45338 6.47411 6.62455 6.72467 6.82424 6.94499 7.33779 7.55334 7.65978 7.70098 7.89395 8.08209 8.39227 9.24792 9.85728 10.51141 11.41130 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002713 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.127522 B =10318.420595 C =10704.721681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.146 3.854 3 C -0.186 4.186 4 C -0.041 4.041 5 C -0.182 4.182 6 C 0.568 3.432 7 O -0.529 6.529 8 N -0.596 5.596 9 C 0.101 3.899 10 C -0.136 4.136 11 C -0.099 4.099 12 C -0.084 4.084 13 C -0.131 4.131 14 C 0.155 3.845 15 N -0.602 5.602 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.150 3.850 25 C 0.130 3.870 26 C 0.187 3.813 27 C -0.124 4.124 28 N -0.486 5.486 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.024 0.976 46 H 0.023 0.977 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 12.448 -7.725 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 C -0.206 4.206 4 C -0.067 4.067 5 C -0.187 4.187 6 C 0.355 3.645 7 O -0.406 6.406 8 N -0.328 5.328 9 C -0.021 4.021 10 C -0.174 4.174 11 C -0.137 4.137 12 C -0.085 4.085 13 C -0.169 4.169 14 C 0.031 3.969 15 N -0.328 5.328 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.023 3.977 25 C 0.008 3.992 26 C 0.049 3.951 27 C -0.181 4.181 28 N -0.197 5.197 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.083 0.917 48 H 0.113 0.887 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.831 11.183 -8.075 24.157 hybrid contribution 1.315 0.715 0.451 1.563 sum -18.516 11.898 -7.624 23.292 Atomic orbital electron populations 1.20767 0.88537 1.03678 1.03356 1.21482 0.97212 0.88236 0.92234 1.21841 0.94357 0.99471 1.04944 1.21690 0.94547 0.97120 0.93309 1.20738 0.94689 0.95090 1.08214 1.18024 0.86092 0.78802 0.81565 1.90779 1.70707 1.42397 1.36756 1.48054 1.07988 1.47988 1.28736 1.21947 0.97429 0.94250 0.88517 1.22000 0.97550 1.02419 0.95447 1.21345 0.93536 0.98723 1.00072 1.21344 0.96972 0.96921 0.93272 1.23020 0.99183 0.93729 1.00996 1.21908 0.82426 1.00954 0.91638 1.44531 1.02652 1.25322 1.60341 1.19116 0.82858 1.06219 1.26630 0.90496 1.24783 0.97454 0.98039 1.00496 1.69827 1.26628 1.19145 1.41446 0.86012 0.83380 0.78424 0.77777 1.20561 1.21837 1.21773 1.21147 0.90503 0.91134 0.94918 1.21612 0.77728 1.01952 0.97890 1.21352 0.88561 0.95065 0.90134 1.21033 1.01622 0.91612 1.03830 1.67455 1.08927 1.29086 1.14186 0.90043 0.90517 0.90236 0.84258 0.84241 0.89946 0.91180 0.90950 0.90960 0.90705 0.92278 0.92523 0.92315 0.87924 0.97211 0.93865 0.95770 0.95874 0.91673 0.88675 0.89864 0.90055 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 2 C 0.15 1.40 6.78 -82.51 -0.56 0.85 16 3 C -0.19 -1.51 9.72 -39.50 -0.38 -1.90 16 4 C -0.04 -0.38 7.59 -38.87 -0.30 -0.68 16 5 C -0.18 -2.27 4.86 -104.82 -0.51 -2.78 16 6 C 0.57 8.25 6.55 -12.33 -0.08 8.17 16 7 O -0.53 -9.44 14.61 5.32 0.08 -9.37 16 8 N -0.60 -7.85 2.83 -174.24 -0.49 -8.34 16 9 C 0.10 1.04 5.61 -3.71 -0.02 1.02 16 10 C -0.14 -1.57 5.90 -26.54 -0.16 -1.72 16 11 C -0.10 -1.42 4.55 -27.03 -0.12 -1.54 16 12 C -0.08 -1.40 0.55 -154.08 -0.09 -1.49 16 13 C -0.13 -2.51 5.73 -24.87 -0.14 -2.66 16 14 C 0.16 3.77 5.57 -2.43 -0.01 3.76 16 15 N -0.60 -15.36 3.40 -170.24 -0.58 -15.94 16 16 C -0.22 -6.15 10.28 -15.06 -0.15 -6.30 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -27.05 10.09 55.49 0.56 -26.49 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.15 3.06 6.43 -3.33 -0.02 3.04 16 25 C 0.13 1.94 4.97 -4.04 -0.02 1.92 16 26 C 0.19 2.45 6.82 -82.17 -0.56 1.89 16 27 C -0.12 -1.59 9.87 36.01 0.36 -1.23 16 28 N -0.49 -5.99 10.17 -5.42 -0.06 -6.05 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 1.01 7.51 -52.49 -0.39 0.62 16 34 H 0.08 0.75 4.77 -51.93 -0.25 0.51 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.94 6.23 -51.93 -0.32 0.62 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.00 6.00 -51.93 -0.31 0.69 16 41 H 0.06 1.20 7.91 -51.93 -0.41 0.79 16 42 H 0.10 2.85 5.88 -51.93 -0.31 2.55 16 43 H 0.01 0.25 7.76 -51.93 -0.40 -0.15 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.50 7.80 -51.93 -0.40 0.10 16 46 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.63 6.90 -51.92 -0.36 1.27 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.10 1.42 5.60 -51.93 -0.29 1.13 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -32.90 388.46 -10.17 -43.08 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.01 Total: 0.40 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.50 Total: -0.40 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.57 Total: -56.81 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.90 -10.17 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054242525.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.732 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds