Wall clock time and date at job start Wed Apr 1 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38347 * 119.46446 * 2 1 4 4 C 1.38362 * 119.30354 * 179.71738 * 3 2 1 5 5 C 1.40019 * 118.28637 * 0.52176 * 4 3 2 6 6 C 1.47840 * 120.55637 * 179.72998 * 5 4 3 7 7 O 1.21553 * 120.00359 * 235.05688 * 6 5 4 8 8 N 1.34777 * 119.99998 * 55.05964 * 6 5 4 9 9 C 1.46931 * 120.69979 * 355.93117 * 8 6 5 10 10 C 1.53195 * 108.92168 * 125.85064 * 9 8 6 11 11 C 1.53169 * 109.26798 * 55.23343 * 10 9 8 12 12 C 1.52234 * 109.66358 * 299.82214 * 11 10 9 13 13 C 1.54502 * 110.24958 * 297.05952 * 12 11 10 14 14 C 1.55026 * 101.51946 * 276.22992 * 13 12 11 15 15 N 1.47488 * 104.90245 * 323.64346 * 14 13 12 16 16 C 1.36933 * 125.66047 * 204.04041 * 15 14 13 17 17 H 1.07996 * 120.00190 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00421 * 359.96438 * 16 15 14 19 19 N 1.31627 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00352 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46840 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47177 * 120.00138 * 20 18 16 23 23 H 1.48505 * 109.46869 * 239.99963 * 20 18 16 24 24 C 1.47192 * 108.67638 * 24.00976 * 15 14 13 25 25 C 1.47074 * 120.70381 * 175.95619 * 8 6 5 26 26 C 1.39516 * 118.88382 * 359.46039 * 5 4 3 27 27 C 1.50702 * 119.71941 * 180.27036 * 26 5 4 28 28 N 1.31699 * 120.56815 * 0.30035 * 26 5 4 29 29 H 1.08996 * 109.47343 * 270.02097 * 1 2 3 30 30 H 1.09003 * 109.46656 * 30.02089 * 1 2 3 31 31 H 1.08996 * 109.46919 * 150.01495 * 1 2 3 32 32 H 1.07999 * 120.34740 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.85168 * 180.25840 * 4 3 2 34 34 H 1.09005 * 109.56345 * 6.02521 * 9 8 6 35 35 H 1.08998 * 109.56537 * 245.68168 * 9 8 6 36 36 H 1.08999 * 109.50549 * 295.29919 * 10 9 8 37 37 H 1.08998 * 109.53777 * 175.19701 * 10 9 8 38 38 H 1.08999 * 109.43327 * 179.76220 * 11 10 9 39 39 H 1.09005 * 109.40360 * 59.86641 * 11 10 9 40 40 H 1.08999 * 111.01534 * 34.28970 * 13 12 11 41 41 H 1.09000 * 111.01260 * 158.17169 * 13 12 11 42 42 H 1.09001 * 110.35028 * 204.79021 * 14 13 12 43 43 H 1.08996 * 110.44886 * 82.54758 * 14 13 12 44 44 H 0.96996 * 119.99843 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.90659 * 239.12790 * 24 15 14 46 46 H 1.09001 * 109.90968 * 117.85690 * 24 15 14 47 47 H 1.08993 * 109.58111 * 112.61655 * 25 8 6 48 48 H 1.09007 * 109.57342 * 352.22340 * 25 8 6 49 49 H 1.08997 * 109.46695 * 94.22931 * 27 26 5 50 50 H 1.08998 * 109.47644 * 214.23186 * 27 26 5 51 51 H 1.09005 * 109.46765 * 334.23846 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5711 1.2007 0.0060 5 6 4.2312 -0.0342 0.0006 6 6 5.7083 -0.0968 0.0005 7 8 6.2902 -0.7211 -0.8651 8 7 6.4098 0.5382 0.9603 9 6 5.7281 1.3698 1.9616 10 6 6.1332 0.8950 3.3607 11 6 7.6602 0.9157 3.4790 12 6 8.2674 -0.0125 2.4363 13 6 7.8248 -1.4699 2.6952 14 6 8.8529 -1.9205 3.7644 15 7 10.1143 -1.2599 3.3798 16 6 11.3724 -1.6868 3.7114 17 1 12.2364 -1.1306 3.3791 18 6 11.5373 -2.8343 4.4748 19 7 10.4842 -3.5119 4.8805 20 14 13.2536 -3.4171 4.9266 21 1 14.2591 -2.4875 4.3521 22 1 13.3934 -3.4464 6.4047 23 1 13.4727 -4.7810 4.3815 24 6 9.7962 -0.0661 2.5797 25 6 7.8737 0.4139 1.0271 26 6 3.4716 -1.2044 0.0010 27 6 4.1626 -2.5437 0.0014 28 7 2.1558 -1.1488 0.0004 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5136 32 1 1.6445 2.1381 -0.0004 33 1 4.1275 2.1262 0.0103 34 1 4.6489 1.2740 1.8421 35 1 6.0205 2.4117 1.8310 36 1 5.7697 -0.1201 3.5200 37 1 5.7010 1.5582 4.1100 38 1 7.9513 0.5823 4.4751 39 1 8.0223 1.9309 3.3160 40 1 6.8093 -1.5058 3.0898 41 1 7.9124 -2.0716 1.7906 42 1 8.9708 -3.0039 3.7441 43 1 8.5401 -1.5924 4.7556 44 1 10.5994 -4.3135 5.4142 45 1 10.2588 -0.1446 1.5959 46 1 10.1528 0.8286 3.0901 47 1 8.3329 1.3746 0.7946 48 1 8.2096 -0.3365 0.3113 49 1 4.2618 -2.9009 1.0264 50 1 3.5742 -3.2564 -0.5764 51 1 5.1517 -2.4422 -0.4454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054242525.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:57 Heat of formation + Delta-G solvation = 6.863195 kcal Electronic energy + Delta-G solvation = -31296.624123 eV Core-core repulsion = 27388.531005 eV Total energy + Delta-G solvation = -3908.093118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.16124 -41.00909 -39.59881 -37.38218 -35.01310 -34.62110 -33.85097 -33.12350 -31.77768 -30.44063 -30.05726 -28.59127 -27.34398 -26.42731 -25.31763 -23.86895 -23.23822 -23.12573 -22.03768 -20.90716 -19.58824 -18.68272 -18.42634 -17.82569 -17.30023 -16.89452 -16.49254 -16.31564 -16.06966 -15.69986 -15.62603 -15.31751 -14.84236 -14.71870 -14.57427 -14.36014 -14.15890 -14.11113 -13.98229 -13.80033 -13.53309 -13.23598 -13.20900 -13.02329 -12.95931 -12.93327 -12.85020 -12.79918 -12.35399 -12.20848 -12.06251 -11.91545 -11.70343 -11.50137 -11.41621 -11.16265 -11.14115 -10.76211 -10.72410 -10.44385 -9.82673 -9.62662 -8.88967 -7.78165 -5.22213 -0.23707 0.18752 1.44440 1.45975 1.48515 1.56244 1.91206 2.48562 2.63757 3.13203 3.30816 3.37638 3.59175 3.65876 3.67887 3.74910 3.81738 3.88619 4.05102 4.11066 4.21916 4.28000 4.34182 4.49351 4.52748 4.53637 4.55775 4.57688 4.61742 4.70111 4.74120 4.77529 4.83466 4.83993 4.88311 4.90538 4.95351 4.99092 5.04943 5.14545 5.16735 5.19505 5.23269 5.41115 5.45479 5.47266 5.50432 5.62357 5.66581 5.80720 6.28498 6.31292 6.92076 7.01886 7.09635 7.77569 8.42275 9.24039 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002713 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.127522 B =10318.420595 C =10704.721681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.136 3.864 3 C -0.170 4.170 4 C -0.035 4.035 5 C -0.199 4.199 6 C 0.567 3.433 7 O -0.574 6.574 8 N -0.593 5.593 9 C 0.101 3.899 10 C -0.130 4.130 11 C -0.095 4.095 12 C -0.069 4.069 13 C -0.114 4.114 14 C 0.163 3.837 15 N -0.625 5.625 16 C -0.235 4.235 17 H 0.082 0.918 18 C -0.071 4.071 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.294 1.294 24 C 0.144 3.856 25 C 0.138 3.862 26 C 0.164 3.836 27 C -0.120 4.120 28 N -0.510 5.510 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.183 0.817 33 H 0.169 0.831 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.062 0.938 43 H -0.010 1.010 44 H 0.245 0.755 45 H 0.022 0.978 46 H 0.035 0.965 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.886 16.429 -7.941 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.002 4.002 3 C -0.190 4.190 4 C -0.061 4.061 5 C -0.204 4.204 6 C 0.355 3.645 7 O -0.455 6.455 8 N -0.324 5.324 9 C -0.020 4.020 10 C -0.168 4.168 11 C -0.133 4.133 12 C -0.070 4.070 13 C -0.152 4.152 14 C 0.038 3.962 15 N -0.351 5.351 16 C -0.364 4.364 17 H 0.100 0.900 18 C -0.263 4.263 19 N -0.600 5.600 20 Si 0.809 3.191 21 H -0.190 1.190 22 H -0.218 1.218 23 H -0.221 1.221 24 C 0.018 3.982 25 C 0.015 3.985 26 C 0.026 3.974 27 C -0.177 4.177 28 N -0.222 5.222 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.200 0.800 33 H 0.186 0.814 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.008 0.992 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.052 0.948 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.930 15.209 -8.287 27.945 hybrid contribution 1.891 -0.502 0.512 2.022 sum -20.040 14.707 -7.775 26.045 Atomic orbital electron populations 1.20884 0.86172 1.04703 1.04374 1.22179 0.98863 0.88139 0.91042 1.22290 0.93869 1.00491 1.02307 1.22035 0.95333 0.96688 0.92059 1.20601 0.93110 0.96383 1.10344 1.18409 0.87097 0.77880 0.81086 1.90753 1.71799 1.44216 1.38724 1.48104 1.07145 1.48027 1.29085 1.22227 0.98219 0.95194 0.86384 1.21969 0.95135 1.02216 0.97467 1.21315 0.95697 0.99026 0.97255 1.21244 0.94394 0.95616 0.95738 1.22774 0.98555 0.95546 0.98323 1.21604 0.83734 0.98536 0.92288 1.44827 1.02276 1.27127 1.60845 1.19504 0.84177 1.06389 1.26322 0.90032 1.25657 1.01223 0.98418 1.00999 1.70096 1.28546 1.19310 1.42094 0.84972 0.79303 0.77680 0.77166 1.18963 1.21810 1.22088 1.21363 0.93336 0.89551 0.93942 1.21368 0.79381 1.02345 0.95375 1.21264 0.89270 0.94974 0.91891 1.20902 1.00580 0.92773 1.03438 1.67446 1.08470 1.31015 1.15224 0.88860 0.87644 0.91106 0.80006 0.81365 0.88229 0.87699 0.93047 0.87728 0.93508 0.89590 0.90899 0.94308 0.92002 0.99227 0.94491 0.95955 0.94754 0.88928 0.91614 0.90213 0.89633 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.16 71.24 0.72 -0.21 16 2 C 0.14 2.20 6.78 42.57 0.29 2.49 16 3 C -0.17 -1.96 9.72 22.33 0.22 -1.75 16 4 C -0.04 -0.53 7.59 22.73 0.17 -0.35 16 5 C -0.20 -4.69 4.86 -20.00 -0.10 -4.79 16 6 C 0.57 16.23 6.55 86.78 0.57 16.80 16 7 O -0.57 -21.35 14.61 -3.88 -0.06 -21.41 16 8 N -0.59 -14.54 2.83 -823.44 -2.33 -16.86 16 9 C 0.10 1.64 5.61 86.36 0.48 2.13 16 10 C -0.13 -2.58 5.90 30.72 0.18 -2.40 16 11 C -0.10 -2.52 4.55 30.40 0.14 -2.39 16 12 C -0.07 -2.27 0.55 -51.91 -0.03 -2.30 16 13 C -0.11 -4.56 5.73 31.80 0.18 -4.38 16 14 C 0.16 8.40 5.57 86.88 0.48 8.88 16 15 N -0.62 -33.02 3.40 -692.50 -2.36 -35.38 16 16 C -0.23 -13.49 10.28 84.03 0.86 -12.63 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 18 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 19 N -0.95 -58.42 10.09 21.65 0.22 -58.20 16 20 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 C 0.14 5.92 6.43 86.46 0.56 6.47 16 25 C 0.14 3.98 4.97 86.07 0.43 4.40 16 26 C 0.16 4.29 6.82 42.89 0.29 4.58 16 27 C -0.12 -3.30 9.87 71.24 0.70 -2.60 16 28 N -0.51 -12.10 10.17 -171.05 -1.74 -13.84 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.35 8.07 -2.39 -0.02 0.33 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 33 H 0.17 1.49 7.51 -2.91 -0.02 1.46 16 34 H 0.10 1.35 4.77 -2.38 -0.01 1.34 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 1.25 6.23 -2.39 -0.01 1.24 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.52 7.49 -2.39 -0.02 1.50 16 39 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.07 2.67 6.00 -2.39 -0.01 2.66 16 41 H 0.04 1.69 7.91 -2.39 -0.02 1.67 16 42 H 0.06 3.70 5.88 -2.39 -0.01 3.68 16 43 H -0.01 -0.55 7.76 -2.39 -0.02 -0.57 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.02 0.93 7.80 -2.39 -0.02 0.91 16 46 H 0.03 1.35 7.83 -2.39 -0.02 1.33 16 47 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.07 2.32 6.90 -2.38 -0.02 2.30 16 49 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.07 2.37 5.60 -2.38 -0.01 2.36 16 Total: -1.00 -78.22 388.46 3.32 -74.90 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.93 Total: 13.61 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.62 Total: 8.29 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -6.20 Total: -124.29 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -78.22 3.32 -74.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054242525.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.758 kcal (2) G-P(sol) polarization free energy of solvation -78.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds