Wall clock time and date at job start Wed Apr 1 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38680 * 120.79086 * 2 1 4 4 C 1.38181 * 119.16078 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.76772 * 359.75446 * 4 3 2 6 6 C 1.31858 * 121.72484 * 0.51113 * 5 4 3 7 7 C 1.50699 * 119.61797 * 179.75841 * 6 5 4 8 8 C 1.52998 * 109.47353 * 104.72816 * 7 6 5 9 9 C 1.52998 * 109.47349 * 224.73240 * 7 6 5 10 10 C 1.50706 * 109.47087 * 344.72935 * 7 6 5 11 11 O 1.21279 * 120.00125 * 5.97293 * 10 7 6 12 12 N 1.34784 * 120.00065 * 185.97072 * 10 7 6 13 13 C 1.47377 * 135.85324 * 174.74573 * 12 10 7 14 14 C 1.52071 * 87.41293 * 154.38799 * 13 12 10 15 15 C 1.47388 * 135.85130 * 355.11229 * 12 10 7 16 16 C 1.53515 * 117.20991 * 267.27855 * 14 13 12 17 17 C 1.54635 * 102.70300 * 262.92491 * 16 14 13 18 18 N 1.47143 * 107.37650 * 339.38870 * 17 16 14 19 19 C 1.36940 * 125.57670 * 179.11719 * 18 17 16 20 20 H 1.08001 * 119.99560 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00249 * 359.97438 * 19 18 17 22 22 N 1.31623 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47723 * 59.99571 * 23 21 19 25 25 H 1.48507 * 109.46916 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47048 * 299.99015 * 23 21 19 27 27 C 1.47759 * 108.84240 * 359.08416 * 18 17 16 28 28 C 1.38219 * 120.76436 * 359.48605 * 6 5 4 29 29 H 1.08999 * 109.47275 * 269.97815 * 1 2 3 30 30 H 1.09007 * 109.46884 * 29.97759 * 1 2 3 31 31 H 1.09003 * 109.46992 * 149.97427 * 1 2 3 32 32 H 1.07993 * 120.41688 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.61460 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47308 * 294.59897 * 8 7 6 35 35 H 1.08997 * 109.47582 * 174.59564 * 8 7 6 36 36 H 1.09004 * 109.46972 * 54.59483 * 8 7 6 37 37 H 1.09000 * 109.46794 * 304.83428 * 9 7 6 38 38 H 1.09005 * 109.47455 * 64.83219 * 9 7 6 39 39 H 1.09000 * 109.47318 * 184.83695 * 9 7 6 40 40 H 1.09005 * 113.54965 * 268.99727 * 13 12 10 41 41 H 1.09002 * 113.54639 * 39.67415 * 13 12 10 42 42 H 1.09000 * 113.54476 * 320.32630 * 15 12 10 43 43 H 1.09006 * 113.54349 * 90.93274 * 15 12 10 44 44 H 1.08996 * 110.76744 * 21.23095 * 16 14 13 45 45 H 1.09005 * 110.76303 * 144.62533 * 16 14 13 46 46 H 1.09004 * 109.85883 * 98.83731 * 17 16 14 47 47 H 1.08995 * 109.86380 * 219.80217 * 17 16 14 48 48 H 0.96997 * 119.99528 * 180.02562 * 22 21 19 49 49 H 1.08998 * 110.40431 * 263.50362 * 27 18 17 50 50 H 1.09002 * 110.40010 * 141.07899 * 27 18 17 51 51 H 1.07998 * 120.42191 * 180.22574 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 0.0038 6 6 3.5983 -1.1516 -0.0012 7 6 4.3800 -2.4400 -0.0014 8 6 4.3260 -3.0696 1.3920 9 6 3.7721 -3.4053 -1.0211 10 6 5.8137 -2.1576 -0.3698 11 8 6.1916 -1.0129 -0.5026 12 7 6.6762 -3.1773 -0.5517 13 6 8.0754 -3.3128 -0.9944 14 6 8.1315 -4.6042 -0.1934 15 6 6.6284 -4.6426 -0.4005 16 6 8.6335 -4.5111 1.2544 17 6 10.1231 -4.9050 1.1238 18 7 10.2721 -5.6485 -0.1372 19 6 11.4448 -6.1576 -0.6281 20 1 11.4506 -6.6910 -1.5671 21 6 12.6259 -5.9879 0.0812 22 7 12.6188 -5.3373 1.2253 23 14 14.2253 -6.6829 -0.5882 24 1 14.5123 -6.0770 -1.9132 25 1 15.3327 -6.3682 0.3498 26 1 14.1026 -8.1557 -0.7334 27 6 8.9493 -5.7567 -0.7866 28 6 2.2166 -1.1909 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0754 -0.0010 34 1 4.8442 -2.4252 2.1022 35 1 4.8088 -4.0465 1.3684 36 1 3.2863 -3.1855 1.6983 37 1 2.7126 -3.5424 -0.8047 38 1 3.8879 -2.9946 -2.0241 39 1 4.2826 -4.3664 -0.9608 40 1 8.1796 -3.4621 -2.0691 41 1 8.7312 -2.5315 -0.6102 42 1 6.0759 -4.9718 0.4796 43 1 6.3260 -5.1644 -1.3085 44 1 8.5345 -3.4938 1.6330 45 1 8.1020 -5.2160 1.8937 46 1 10.7425 -4.0084 1.1006 47 1 10.4146 -5.5348 1.9642 48 1 13.4442 -5.2184 1.7207 49 1 8.4859 -6.7139 -0.5478 50 1 9.0451 -5.6385 -1.8659 51 1 1.6965 -2.1374 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072849526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:34 Heat of formation + Delta-G solvation = 81.320853 kcal Electronic energy + Delta-G solvation = -30593.788055 eV Core-core repulsion = 26688.923664 eV Total energy + Delta-G solvation = -3904.864392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.11587 -40.26065 -38.25349 -35.58763 -35.47039 -34.00036 -32.13948 -30.55735 -29.31128 -28.52157 -28.11472 -27.54011 -25.94995 -25.76532 -24.57578 -23.62987 -22.49653 -21.36931 -20.23890 -18.72670 -18.30058 -16.95371 -16.72751 -16.57096 -15.98004 -15.69628 -15.37771 -15.13998 -14.76183 -14.65213 -14.32210 -14.12402 -13.99937 -13.74880 -13.32514 -13.04415 -12.96329 -12.87586 -12.64794 -12.58598 -12.31605 -12.18896 -12.16316 -11.85721 -11.82153 -11.73492 -11.43205 -11.29899 -10.94340 -10.86927 -10.56973 -10.34799 -10.10925 -10.10151 -9.78871 -9.71355 -9.62583 -9.59228 -9.12927 -8.73951 -8.56851 -8.32057 -6.80977 -5.68467 -3.02161 0.95216 1.15431 2.91521 3.03769 3.42529 3.46781 3.48163 3.68637 3.93888 4.26374 4.48979 4.49456 4.58273 4.68822 4.70863 4.82366 4.87899 4.96305 5.04131 5.08764 5.16144 5.28285 5.30723 5.33849 5.40662 5.44976 5.47586 5.53412 5.58863 5.61206 5.63306 5.69425 5.72883 5.84390 5.87244 5.88798 5.99145 6.05389 6.09983 6.13955 6.26351 6.28403 6.50789 6.56884 6.59052 6.71291 6.73823 7.58079 7.65672 7.85752 8.03282 8.05780 8.28023 8.52848 9.24173 9.84384 10.50099 11.42993 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.002221 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.992611 B =12601.616093 C =12902.829466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.181 4.181 4 C 0.099 3.901 5 N -0.430 5.430 6 C 0.144 3.856 7 C -0.027 4.027 8 C -0.137 4.137 9 C -0.141 4.141 10 C 0.544 3.456 11 O -0.494 6.494 12 N -0.645 5.645 13 C 0.128 3.872 14 C -0.104 4.104 15 C 0.109 3.891 16 C -0.116 4.116 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.153 3.847 28 C -0.168 4.168 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.153 0.847 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.043 0.957 48 H 0.252 0.748 49 H 0.025 0.975 50 H 0.041 0.959 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.393 6.621 -1.559 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.201 4.201 4 C -0.058 4.058 5 N -0.138 5.138 6 C 0.005 3.995 7 C -0.031 4.031 8 C -0.195 4.195 9 C -0.199 4.199 10 C 0.331 3.669 11 O -0.366 6.366 12 N -0.382 5.382 13 C 0.007 3.993 14 C -0.106 4.106 15 C -0.014 4.014 16 C -0.155 4.155 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.026 3.974 28 C -0.188 4.188 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.059 0.941 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.184 7.476 -1.519 26.314 hybrid contribution -0.074 -0.289 -0.360 0.468 sum -25.258 7.186 -1.879 26.328 Atomic orbital electron populations 1.20797 0.90361 1.03163 1.02741 1.20243 0.96560 0.92927 0.96057 1.22085 0.95905 0.98460 1.03626 1.22954 0.91394 0.96738 0.94728 1.68105 1.39379 0.97281 1.09000 1.20713 0.90245 0.93068 0.95481 1.19606 0.92485 0.92598 0.98415 1.21892 1.02832 1.01288 0.93480 1.21973 1.01181 0.98655 0.98071 1.19640 0.85569 0.83910 0.77813 1.90805 1.77076 1.19423 1.49309 1.49818 1.14336 1.06772 1.67296 1.22721 0.81145 0.96754 0.98728 1.22179 0.93449 0.96628 0.98315 1.22902 0.96757 0.80565 1.01171 1.22450 0.99747 1.00614 0.92656 1.21207 0.88378 0.96109 0.88791 1.44526 1.02170 1.64846 1.21547 1.18990 0.84081 1.28816 1.03757 0.90488 1.24804 0.97799 1.00721 0.97151 1.69955 1.26193 1.45754 1.14986 0.86204 0.83167 0.78580 0.77816 1.21197 1.21668 1.21217 1.21142 0.86849 0.93577 0.95783 1.21730 0.94504 0.98707 1.03876 0.90660 0.91149 0.91141 0.85180 0.82951 0.91725 0.90739 0.91473 0.91264 0.92018 0.90759 0.90099 0.90374 0.90518 0.89937 0.92022 0.91977 0.93585 0.93869 0.93716 0.95710 0.94064 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.06 36.00 0.36 -0.26 16 2 C -0.05 -0.44 5.92 -104.31 -0.62 -1.06 16 3 C -0.18 -1.68 9.82 -39.44 -0.39 -2.07 16 4 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 5 N -0.43 -6.52 7.26 -9.48 -0.07 -6.59 16 6 C 0.14 1.84 5.54 -82.59 -0.46 1.38 16 7 C -0.03 -0.32 0.65 -156.81 -0.10 -0.42 16 8 C -0.14 -1.40 8.32 37.16 0.31 -1.09 16 9 C -0.14 -1.29 7.94 37.16 0.30 -0.99 16 10 C 0.54 8.68 6.71 -10.98 -0.07 8.61 16 11 O -0.49 -9.91 14.77 5.56 0.08 -9.82 16 12 N -0.65 -9.60 3.58 -185.77 -0.67 -10.26 16 13 C 0.13 2.13 7.98 -7.35 -0.06 2.07 16 14 C -0.10 -1.69 1.06 -155.22 -0.16 -1.86 16 15 C 0.11 1.36 5.67 -7.49 -0.04 1.32 16 16 C -0.12 -2.12 6.40 -25.60 -0.16 -2.28 16 17 C 0.18 4.29 5.39 -2.83 -0.02 4.28 16 18 N -0.60 -14.95 3.41 -170.53 -0.58 -15.53 16 19 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -27.04 10.30 55.49 0.57 -26.47 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.15 2.93 6.70 -3.22 -0.02 2.90 16 28 C -0.17 -1.65 8.68 -39.44 -0.34 -1.99 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.69 5.76 -51.93 -0.30 0.39 16 36 H 0.07 0.54 7.98 -51.93 -0.41 0.12 16 37 H 0.07 0.47 6.49 -51.93 -0.34 0.13 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.61 6.09 -51.93 -0.32 0.29 16 40 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.08 0.82 6.06 -51.93 -0.31 0.51 16 43 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 44 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.24 7.39 -51.93 -0.38 0.86 16 47 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 51 H 0.13 0.96 6.66 -52.49 -0.35 0.61 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -34.48 397.32 -9.86 -44.34 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.24 Total: -1.48 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.93 Total: 2.79 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.74 Total: -58.85 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.48 -9.86 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072849526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.666 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds