Wall clock time and date at job start Wed Apr 1 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38680 * 120.79086 * 2 1 4 4 C 1.38181 * 119.16078 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.76772 * 359.75446 * 4 3 2 6 6 C 1.31858 * 121.72484 * 0.51113 * 5 4 3 7 7 C 1.50699 * 119.61797 * 179.75841 * 6 5 4 8 8 C 1.52998 * 109.47353 * 104.72816 * 7 6 5 9 9 C 1.52998 * 109.47349 * 224.73240 * 7 6 5 10 10 C 1.50706 * 109.47087 * 344.72935 * 7 6 5 11 11 O 1.21279 * 120.00125 * 5.97293 * 10 7 6 12 12 N 1.34784 * 120.00065 * 185.97072 * 10 7 6 13 13 C 1.47377 * 135.85324 * 174.74573 * 12 10 7 14 14 C 1.52071 * 87.41293 * 154.38799 * 13 12 10 15 15 C 1.47388 * 135.85130 * 355.11229 * 12 10 7 16 16 C 1.53515 * 117.20991 * 267.27855 * 14 13 12 17 17 C 1.54635 * 102.70300 * 262.92491 * 16 14 13 18 18 N 1.47143 * 107.37650 * 339.38870 * 17 16 14 19 19 C 1.36940 * 125.57670 * 179.11719 * 18 17 16 20 20 H 1.08001 * 119.99560 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00249 * 359.97438 * 19 18 17 22 22 N 1.31623 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47723 * 59.99571 * 23 21 19 25 25 H 1.48507 * 109.46916 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47048 * 299.99015 * 23 21 19 27 27 C 1.47759 * 108.84240 * 359.08416 * 18 17 16 28 28 C 1.38219 * 120.76436 * 359.48605 * 6 5 4 29 29 H 1.08999 * 109.47275 * 269.97815 * 1 2 3 30 30 H 1.09007 * 109.46884 * 29.97759 * 1 2 3 31 31 H 1.09003 * 109.46992 * 149.97427 * 1 2 3 32 32 H 1.07993 * 120.41688 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.61460 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47308 * 294.59897 * 8 7 6 35 35 H 1.08997 * 109.47582 * 174.59564 * 8 7 6 36 36 H 1.09004 * 109.46972 * 54.59483 * 8 7 6 37 37 H 1.09000 * 109.46794 * 304.83428 * 9 7 6 38 38 H 1.09005 * 109.47455 * 64.83219 * 9 7 6 39 39 H 1.09000 * 109.47318 * 184.83695 * 9 7 6 40 40 H 1.09005 * 113.54965 * 268.99727 * 13 12 10 41 41 H 1.09002 * 113.54639 * 39.67415 * 13 12 10 42 42 H 1.09000 * 113.54476 * 320.32630 * 15 12 10 43 43 H 1.09006 * 113.54349 * 90.93274 * 15 12 10 44 44 H 1.08996 * 110.76744 * 21.23095 * 16 14 13 45 45 H 1.09005 * 110.76303 * 144.62533 * 16 14 13 46 46 H 1.09004 * 109.85883 * 98.83731 * 17 16 14 47 47 H 1.08995 * 109.86380 * 219.80217 * 17 16 14 48 48 H 0.96997 * 119.99528 * 180.02562 * 22 21 19 49 49 H 1.08998 * 110.40431 * 263.50362 * 27 18 17 50 50 H 1.09002 * 110.40010 * 141.07899 * 27 18 17 51 51 H 1.07998 * 120.42191 * 180.22574 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 0.0038 6 6 3.5983 -1.1516 -0.0012 7 6 4.3800 -2.4400 -0.0014 8 6 4.3260 -3.0696 1.3920 9 6 3.7721 -3.4053 -1.0211 10 6 5.8137 -2.1576 -0.3698 11 8 6.1916 -1.0129 -0.5026 12 7 6.6762 -3.1773 -0.5517 13 6 8.0754 -3.3128 -0.9944 14 6 8.1315 -4.6042 -0.1934 15 6 6.6284 -4.6426 -0.4005 16 6 8.6335 -4.5111 1.2544 17 6 10.1231 -4.9050 1.1238 18 7 10.2721 -5.6485 -0.1372 19 6 11.4448 -6.1576 -0.6281 20 1 11.4506 -6.6910 -1.5671 21 6 12.6259 -5.9879 0.0812 22 7 12.6188 -5.3373 1.2253 23 14 14.2253 -6.6829 -0.5882 24 1 14.5123 -6.0770 -1.9132 25 1 15.3327 -6.3682 0.3498 26 1 14.1026 -8.1557 -0.7334 27 6 8.9493 -5.7567 -0.7866 28 6 2.2166 -1.1909 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0754 -0.0010 34 1 4.8442 -2.4252 2.1022 35 1 4.8088 -4.0465 1.3684 36 1 3.2863 -3.1855 1.6983 37 1 2.7126 -3.5424 -0.8047 38 1 3.8879 -2.9946 -2.0241 39 1 4.2826 -4.3664 -0.9608 40 1 8.1796 -3.4621 -2.0691 41 1 8.7312 -2.5315 -0.6102 42 1 6.0759 -4.9718 0.4796 43 1 6.3260 -5.1644 -1.3085 44 1 8.5345 -3.4938 1.6330 45 1 8.1020 -5.2160 1.8937 46 1 10.7425 -4.0084 1.1006 47 1 10.4146 -5.5348 1.9642 48 1 13.4442 -5.2184 1.7207 49 1 8.4859 -6.7139 -0.5478 50 1 9.0451 -5.6385 -1.8659 51 1 1.6965 -2.1374 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072849526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:33 Heat of formation + Delta-G solvation = 59.954918 kcal Electronic energy + Delta-G solvation = -30594.714552 eV Core-core repulsion = 26688.923664 eV Total energy + Delta-G solvation = -3905.790888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17829 -41.29692 -39.47217 -37.25193 -36.42975 -34.71026 -34.02971 -31.55183 -30.93181 -29.99704 -28.70185 -28.23005 -27.42416 -27.10382 -25.73009 -25.07892 -23.24762 -22.37341 -22.07309 -19.95157 -19.59240 -18.59785 -17.87575 -17.47998 -17.00001 -16.77750 -16.59728 -16.54970 -16.11402 -15.76006 -15.57562 -15.50032 -14.93175 -14.79952 -14.39202 -14.13306 -13.93715 -13.73456 -13.66838 -13.51826 -13.48594 -13.31693 -13.26516 -13.03669 -12.95023 -12.81125 -12.76731 -12.66068 -12.26377 -12.18456 -12.07427 -12.02829 -11.82543 -11.76256 -11.60568 -11.13026 -10.79554 -10.65999 -10.33469 -9.90505 -9.74499 -9.54594 -8.84235 -7.80947 -5.15725 0.18550 0.43504 1.47184 1.50592 1.56477 1.76070 1.87848 2.52433 2.89096 3.12370 3.30996 3.39814 3.44042 3.63315 3.77680 3.86354 3.89948 3.99183 4.08291 4.14599 4.21897 4.23578 4.29491 4.38647 4.49285 4.52828 4.61841 4.68605 4.68958 4.72613 4.72890 4.81428 4.83015 4.85064 4.88798 4.92716 4.99244 5.01074 5.06362 5.11356 5.20264 5.21859 5.24798 5.27448 5.28620 5.44973 5.50249 5.69172 5.80264 5.86172 6.23023 6.87608 7.13568 7.24566 7.35431 7.82318 8.46543 9.29411 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.002221 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.992611 B =12601.616093 C =12902.829466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.051 4.051 3 C -0.177 4.177 4 C 0.071 3.929 5 N -0.485 5.485 6 C 0.117 3.883 7 C -0.021 4.021 8 C -0.133 4.133 9 C -0.136 4.136 10 C 0.534 3.466 11 O -0.548 6.548 12 N -0.644 5.644 13 C 0.120 3.880 14 C -0.098 4.098 15 C 0.128 3.872 16 C -0.100 4.100 17 C 0.189 3.811 18 N -0.627 5.627 19 C -0.234 4.234 20 H 0.088 0.912 21 C -0.073 4.073 22 N -0.955 5.955 23 Si 0.977 3.023 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.273 1.273 27 C 0.151 3.849 28 C -0.163 4.163 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.055 0.945 45 H 0.089 0.911 46 H -0.002 1.002 47 H 0.008 0.992 48 H 0.244 0.756 49 H 0.048 0.952 50 H 0.051 0.949 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.808 4.472 -2.600 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.085 4.085 5 N -0.194 5.194 6 C -0.022 4.022 7 C -0.025 4.025 8 C -0.191 4.191 9 C -0.194 4.194 10 C 0.323 3.677 11 O -0.423 6.423 12 N -0.380 5.380 13 C -0.003 4.003 14 C -0.099 4.099 15 C 0.006 3.994 16 C -0.138 4.138 17 C 0.064 3.936 18 N -0.353 5.353 19 C -0.363 4.363 20 H 0.106 0.894 21 C -0.266 4.266 22 N -0.604 5.604 23 Si 0.806 3.194 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.199 1.199 27 C 0.026 3.974 28 C -0.182 4.182 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.017 0.983 47 H 0.026 0.974 48 H 0.053 0.947 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -29.649 5.289 -2.586 30.228 hybrid contribution 1.288 0.457 -0.063 1.368 sum -28.361 5.746 -2.649 29.058 Atomic orbital electron populations 1.20869 0.87489 1.04468 1.03856 1.20727 0.98502 0.92283 0.94423 1.22355 0.94796 1.00233 1.02237 1.23129 0.92984 0.96262 0.96169 1.67975 1.41599 0.98851 1.11000 1.21013 0.91744 0.92646 0.96767 1.19684 0.89276 0.93440 1.00114 1.21908 1.04522 1.00957 0.91678 1.22009 1.03084 0.98073 0.96216 1.20584 0.87238 0.83194 0.76646 1.90780 1.78327 1.21687 1.51550 1.49854 1.13235 1.08132 1.66778 1.22717 0.82226 0.95952 0.99403 1.22018 0.96429 0.95329 0.96144 1.23016 0.93295 0.78910 1.04169 1.22233 0.95949 1.00741 0.94884 1.20886 0.91518 0.93377 0.87815 1.44838 1.03771 1.64558 1.22176 1.19453 0.85262 1.27809 1.03808 0.89435 1.25672 1.01235 1.01900 0.97743 1.70205 1.26202 1.47620 1.16423 0.85164 0.78922 0.78366 0.76970 1.20482 1.22637 1.19921 1.21367 0.84574 0.95399 0.96044 1.22021 0.93224 1.00485 1.02518 0.89439 0.90108 0.89667 0.82550 0.83000 0.94506 0.89329 0.88567 0.88140 0.93416 0.89225 0.88922 0.94104 0.87507 0.86380 0.92640 0.89243 0.98347 0.97370 0.94711 0.93389 0.93096 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.06 71.23 0.72 -0.04 16 2 C -0.05 -0.76 5.92 -19.67 -0.12 -0.88 16 3 C -0.18 -3.07 9.82 22.36 0.22 -2.85 16 4 C 0.07 1.78 11.18 84.67 0.95 2.72 16 5 N -0.49 -15.31 7.26 -183.89 -1.34 -16.65 16 6 C 0.12 2.88 5.54 42.55 0.24 3.12 16 7 C -0.02 -0.46 0.65 -53.67 -0.03 -0.50 16 8 C -0.13 -2.34 8.32 71.98 0.60 -1.74 16 9 C -0.14 -1.94 7.94 71.98 0.57 -1.37 16 10 C 0.53 17.03 6.71 87.66 0.59 17.62 16 11 O -0.55 -23.21 14.77 -3.02 -0.04 -23.25 16 12 N -0.64 -18.39 3.58 -860.05 -3.08 -21.48 16 13 C 0.12 4.00 7.98 83.76 0.67 4.67 16 14 C -0.10 -3.02 1.06 -52.62 -0.06 -3.08 16 15 C 0.13 2.66 5.67 83.66 0.47 3.14 16 16 C -0.10 -3.63 6.40 31.32 0.20 -3.43 16 17 C 0.19 9.47 5.39 86.81 0.47 9.93 16 18 N -0.63 -31.38 3.41 -693.44 -2.36 -33.74 16 19 C -0.23 -12.95 10.28 84.03 0.86 -12.08 16 20 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 22 N -0.95 -58.87 10.30 21.65 0.22 -58.65 16 23 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C 0.15 5.48 6.70 86.22 0.58 6.06 16 28 C -0.16 -2.71 8.68 22.36 0.19 -2.51 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.41 8.10 -2.38 -0.02 0.40 16 31 H 0.08 0.37 8.10 -2.39 -0.02 0.35 16 32 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.26 5.76 -2.39 -0.01 1.24 16 36 H 0.10 1.13 7.98 -2.38 -0.02 1.11 16 37 H 0.10 0.80 6.49 -2.39 -0.02 0.79 16 38 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.09 0.98 6.09 -2.39 -0.01 0.96 16 40 H 0.09 2.85 8.06 -2.38 -0.02 2.83 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.11 1.68 6.06 -2.39 -0.01 1.67 16 43 H 0.12 1.77 7.96 -2.38 -0.02 1.75 16 44 H 0.05 2.08 8.07 -2.39 -0.02 2.06 16 45 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 46 H 0.00 -0.10 7.39 -2.38 -0.02 -0.12 16 47 H 0.01 0.45 7.49 -2.39 -0.02 0.44 16 48 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.05 1.76 8.00 -2.39 -0.02 1.74 16 51 H 0.16 1.53 6.66 -2.91 -0.02 1.51 16 Total: -1.00 -83.46 397.32 3.92 -79.53 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.92 Total: 10.88 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.58 Total: 15.04 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.56 Total: -130.52 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -83.46 3.92 -79.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072849526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.486 kcal (2) G-P(sol) polarization free energy of solvation -83.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds