Wall clock time and date at job start Wed Apr 1 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38354 * 119.46163 * 2 1 4 4 C 1.38351 * 119.30753 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.85884 * 180.02562 * 4 3 2 6 6 C 1.40026 * 118.28438 * 0.02562 * 4 3 2 7 7 C 1.47840 * 120.55827 * 179.97438 * 6 4 3 8 8 O 1.21557 * 119.99724 * 90.00167 * 7 6 4 9 9 N 1.34772 * 120.00415 * 270.00331 * 7 6 4 10 10 C 1.46501 * 120.00384 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.88270 * 333.15296 * 10 9 7 12 12 C 1.53943 * 113.66632 * 104.50100 * 10 9 7 13 13 C 1.53957 * 87.29592 * 89.73640 * 12 10 9 14 14 H 1.08999 * 113.65708 * 139.29842 * 13 12 10 15 15 N 1.46499 * 113.66469 * 270.26501 * 13 12 10 16 16 C 1.36939 * 119.99933 * 255.76878 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47144 * 90.00258 * 20 18 16 22 22 H 1.48500 * 109.47140 * 210.00775 * 20 18 16 23 23 H 1.48502 * 109.46967 * 330.00206 * 20 18 16 24 24 C 1.52909 * 86.77904 * 24.73790 * 13 12 10 25 25 C 1.52905 * 121.13976 * 209.38147 * 24 13 12 26 26 C 1.53951 * 86.78325 * 209.37453 * 25 24 13 27 27 C 1.52905 * 121.13949 * 100.81402 * 24 13 12 28 28 C 1.39522 * 118.88322 * 0.27285 * 6 4 3 29 29 C 1.50704 * 119.71747 * 179.72510 * 28 6 4 30 30 N 1.31691 * 120.56733 * 359.45181 * 28 6 4 31 31 H 1.09007 * 109.47222 * 89.99906 * 1 2 3 32 32 H 1.09006 * 109.47321 * 209.99980 * 1 2 3 33 33 H 1.08997 * 109.47543 * 329.99676 * 1 2 3 34 34 H 1.08001 * 120.34647 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47338 * 269.97810 * 5 4 3 36 36 H 1.08994 * 109.47085 * 29.98086 * 5 4 3 37 37 H 1.08996 * 109.47213 * 149.98018 * 5 4 3 38 38 H 0.97005 * 119.99959 * 359.97438 * 9 7 6 39 39 H 1.09007 * 113.58319 * 335.13635 * 12 10 9 40 40 H 1.09001 * 113.65455 * 204.35077 * 12 10 9 41 41 H 0.97001 * 119.99790 * 75.48851 * 15 13 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.09005 * 113.66191 * 323.84405 * 25 24 13 44 44 H 1.08999 * 113.66553 * 94.89899 * 25 24 13 45 45 H 1.09001 * 113.58062 * 270.12702 * 26 25 24 46 46 H 1.09006 * 113.65276 * 139.34895 * 26 25 24 47 47 H 1.09000 * 113.66438 * 265.09198 * 27 24 13 48 48 H 1.08995 * 113.66448 * 36.15502 * 27 24 13 49 49 H 1.09001 * 109.46827 * 89.99493 * 29 28 6 50 50 H 1.08994 * 109.47188 * 209.99765 * 29 28 6 51 51 H 1.09000 * 109.46869 * 329.99940 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.3474 2.4924 0.0011 6 6 4.2311 -0.0339 0.0005 7 6 5.7082 -0.0966 0.0005 8 8 6.3154 -0.1224 1.0532 9 7 6.3816 -0.1250 -1.1666 10 6 7.8452 -0.1877 -1.1666 11 1 8.2881 0.2471 -0.2705 12 6 8.4043 -1.5778 -1.5201 13 6 8.3878 -1.1295 -2.9928 14 1 9.2645 -1.4480 -3.5568 15 7 7.1291 -1.4227 -3.6827 16 6 7.0595 -2.4667 -4.5661 17 1 7.9338 -3.0712 -4.7576 18 6 5.8654 -2.7481 -5.2154 19 7 4.8000 -2.0112 -4.9823 20 14 5.7707 -4.1718 -6.4210 21 1 5.3808 -5.4083 -5.6971 22 1 4.7591 -3.8697 -7.4653 23 1 7.0971 -4.3691 -7.0590 24 6 8.4806 0.3036 -2.4678 25 6 7.8793 1.4724 -3.2491 26 6 8.9795 2.3462 -2.6197 27 6 9.8098 1.0593 -2.4625 28 6 3.4715 -1.2042 -0.0059 29 6 4.1627 -2.5434 -0.0123 30 7 2.1558 -1.1487 -0.0009 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6443 2.1381 -0.0004 35 1 4.5353 2.8039 -1.0264 36 1 3.7715 3.2623 0.5146 37 1 5.2970 2.3453 0.5156 38 1 5.8970 -0.1048 -2.0067 39 1 7.7136 -2.3932 -1.3048 40 1 9.4061 -1.7583 -1.1304 41 1 6.3438 -0.8798 -3.5106 42 1 3.9656 -2.2077 -5.4363 43 1 7.9688 1.3680 -4.3305 44 1 6.8720 1.7400 -2.9300 45 1 8.6890 2.7964 -1.6704 46 1 9.4167 3.0653 -3.3124 47 1 10.3448 0.9969 -1.5149 48 1 10.4418 0.8388 -3.3227 49 1 4.3288 -2.8715 1.0138 50 1 3.5387 -3.2718 -0.5301 51 1 5.1205 -2.4555 -0.5251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078685466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:23 Heat of formation + Delta-G solvation = 45.608981 kcal Electronic energy + Delta-G solvation = -31663.193143 eV Core-core repulsion = 27756.780169 eV Total energy + Delta-G solvation = -3906.412975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94728 -40.26603 -38.40027 -35.30524 -34.17813 -33.73908 -33.54183 -32.16320 -29.85796 -29.03406 -27.85275 -27.24345 -25.51463 -24.66692 -24.12306 -23.15690 -21.97876 -21.06335 -20.26819 -20.01071 -18.49510 -17.19685 -17.05365 -16.90536 -15.80198 -15.27948 -15.19097 -14.85620 -14.74791 -14.50258 -14.16445 -13.90237 -13.61431 -13.35454 -13.11418 -13.10820 -12.97586 -12.90161 -12.73717 -12.50142 -12.21434 -12.12286 -11.92927 -11.88181 -11.65853 -11.63033 -11.56656 -11.41618 -10.96662 -10.90026 -10.71046 -10.24020 -10.14356 -10.00566 -9.81922 -9.71033 -9.43253 -9.35975 -9.24473 -8.88852 -8.66863 -8.56801 -7.05726 -5.86684 -3.15465 1.00702 1.29171 2.77296 3.34256 3.38971 3.45112 3.45952 3.74468 4.25197 4.48454 4.56805 4.62968 4.71328 4.82975 4.93672 5.01973 5.08365 5.12577 5.27934 5.30924 5.38815 5.40470 5.43973 5.49280 5.55442 5.59909 5.63452 5.73060 5.82994 5.83955 5.85974 5.87118 5.92012 5.97651 6.00709 6.06356 6.09668 6.19297 6.23970 6.25774 6.29736 6.32986 6.38216 6.59029 6.67152 6.70690 6.75101 6.91410 7.05821 7.65074 7.81779 8.07996 8.31533 8.45135 9.42912 9.97599 10.31262 11.35419 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007946 B = 0.005044 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.765693 B = 5549.600151 C = 7753.728114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.147 3.853 3 C -0.187 4.187 4 C -0.002 4.002 5 C -0.122 4.122 6 C -0.185 4.185 7 C 0.577 3.423 8 O -0.542 6.542 9 N -0.688 5.688 10 C 0.150 3.850 11 H 0.091 0.909 12 C -0.186 4.186 13 C 0.180 3.820 14 H 0.064 0.936 15 N -0.700 5.700 16 C -0.242 4.242 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.141 4.141 27 C -0.103 4.103 28 C 0.187 3.813 29 C -0.110 4.110 30 N -0.487 5.487 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.379 0.621 42 H 0.256 0.744 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 9.754 9.121 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.009 3.991 3 C -0.207 4.207 4 C -0.010 4.010 5 C -0.179 4.179 6 C -0.190 4.190 7 C 0.362 3.638 8 O -0.420 6.420 9 N -0.339 5.339 10 C 0.045 3.955 11 H 0.109 0.891 12 C -0.228 4.228 13 C 0.068 3.932 14 H 0.082 0.918 15 N -0.339 5.339 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.133 4.133 25 C -0.153 4.153 26 C -0.179 4.179 27 C -0.141 4.141 28 C 0.048 3.952 29 C -0.167 4.167 30 N -0.198 5.198 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.248 0.752 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.214 0.786 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.899 8.815 9.697 13.135 hybrid contribution -0.248 0.105 -1.036 1.070 sum -1.146 8.920 8.661 12.485 Atomic orbital electron populations 1.20735 0.88740 1.03313 1.03327 1.21376 0.97025 0.88169 0.92519 1.21663 0.93609 0.99343 1.06100 1.20242 0.93811 0.94282 0.92633 1.20902 1.00174 0.93440 1.03366 1.20606 0.94447 0.94642 1.09282 1.17927 0.86222 0.75616 0.84035 1.90759 1.69403 1.50515 1.31348 1.45802 1.06784 1.72667 1.08655 1.21459 0.79418 0.97779 0.96874 0.89111 1.24301 1.00294 0.96550 1.01669 1.21040 0.90971 0.90557 0.90653 0.91768 1.42085 1.06927 1.36176 1.48719 1.19238 0.95957 1.06039 1.16079 0.90952 1.24713 0.95841 0.99369 1.00532 1.69625 1.00928 1.40906 1.46322 0.86198 0.77161 0.82138 0.80716 1.21686 1.21821 1.20756 1.23395 0.97323 0.96268 0.96268 1.22512 0.97642 0.94953 1.00232 1.22860 0.98022 0.96325 1.00650 1.22479 0.94716 0.95091 1.01855 1.21288 0.88769 0.94690 0.90440 1.20824 1.00658 0.92251 1.03013 1.67370 1.08917 1.29019 1.14494 0.90070 0.90401 0.90758 0.84538 0.89888 0.90590 0.90761 0.75229 0.90925 0.90436 0.78591 0.93409 0.89410 0.92122 0.90807 0.91915 0.91616 0.89604 0.90196 0.89634 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 36.00 0.37 -0.69 16 2 C 0.15 2.08 6.78 -82.51 -0.56 1.52 16 3 C -0.19 -2.43 9.43 -39.50 -0.37 -2.80 16 4 C 0.00 -0.02 5.95 -103.91 -0.62 -0.64 16 5 C -0.12 -1.43 9.69 36.00 0.35 -1.08 16 6 C -0.18 -3.15 5.65 -104.82 -0.59 -3.74 16 7 C 0.58 10.27 4.35 -12.33 -0.05 10.21 16 8 O -0.54 -10.86 16.75 5.32 0.09 -10.77 16 9 N -0.69 -11.84 4.71 -54.31 -0.26 -12.10 16 10 C 0.15 2.46 4.08 -67.48 -0.28 2.18 16 11 H 0.09 1.49 7.54 -51.93 -0.39 1.10 16 12 C -0.19 -3.23 7.68 -25.75 -0.20 -3.42 16 13 C 0.18 3.36 4.35 -67.48 -0.29 3.07 16 14 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 15 N -0.70 -16.02 4.97 -52.99 -0.26 -16.28 16 16 C -0.24 -6.32 9.98 -15.06 -0.15 -6.47 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 20 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.13 -2.00 0.76 -154.71 -0.12 -2.12 16 25 C -0.12 -1.73 7.18 -26.28 -0.19 -1.92 16 26 C -0.14 -1.73 8.08 -25.75 -0.21 -1.94 16 27 C -0.10 -1.30 7.84 -26.28 -0.21 -1.51 16 28 C 0.19 3.30 6.82 -82.17 -0.56 2.73 16 29 C -0.11 -1.87 9.79 36.01 0.35 -1.52 16 30 N -0.49 -8.27 10.17 -5.42 -0.06 -8.32 16 31 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.07 0.96 7.19 -51.93 -0.37 0.59 16 38 H 0.41 7.64 5.90 -40.82 -0.24 7.40 16 39 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.38 9.02 5.39 -40.82 -0.22 8.80 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.06 0.93 7.51 -51.93 -0.39 0.54 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 51 H 0.08 1.51 7.07 -51.93 -0.37 1.14 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -30.50 411.40 -10.29 -40.79 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -8.29 Total: 17.91 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.42 Total: -8.46 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.15 Total: -62.38 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.50 -10.29 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078685466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.399 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds