Wall clock time and date at job start Wed Apr 1 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38354 * 119.46163 * 2 1 4 4 C 1.38351 * 119.30753 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.85884 * 180.02562 * 4 3 2 6 6 C 1.40026 * 118.28438 * 0.02562 * 4 3 2 7 7 C 1.47840 * 120.55827 * 179.97438 * 6 4 3 8 8 O 1.21557 * 119.99724 * 90.00167 * 7 6 4 9 9 N 1.34772 * 120.00415 * 270.00331 * 7 6 4 10 10 C 1.46501 * 120.00384 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.88270 * 333.15296 * 10 9 7 12 12 C 1.53943 * 113.66632 * 104.50100 * 10 9 7 13 13 C 1.53957 * 87.29592 * 89.73640 * 12 10 9 14 14 H 1.08999 * 113.65708 * 139.29842 * 13 12 10 15 15 N 1.46499 * 113.66469 * 270.26501 * 13 12 10 16 16 C 1.36939 * 119.99933 * 255.76878 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47144 * 90.00258 * 20 18 16 22 22 H 1.48500 * 109.47140 * 210.00775 * 20 18 16 23 23 H 1.48502 * 109.46967 * 330.00206 * 20 18 16 24 24 C 1.52909 * 86.77904 * 24.73790 * 13 12 10 25 25 C 1.52905 * 121.13976 * 209.38147 * 24 13 12 26 26 C 1.53951 * 86.78325 * 209.37453 * 25 24 13 27 27 C 1.52905 * 121.13949 * 100.81402 * 24 13 12 28 28 C 1.39522 * 118.88322 * 0.27285 * 6 4 3 29 29 C 1.50704 * 119.71747 * 179.72510 * 28 6 4 30 30 N 1.31691 * 120.56733 * 359.45181 * 28 6 4 31 31 H 1.09007 * 109.47222 * 89.99906 * 1 2 3 32 32 H 1.09006 * 109.47321 * 209.99980 * 1 2 3 33 33 H 1.08997 * 109.47543 * 329.99676 * 1 2 3 34 34 H 1.08001 * 120.34647 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47338 * 269.97810 * 5 4 3 36 36 H 1.08994 * 109.47085 * 29.98086 * 5 4 3 37 37 H 1.08996 * 109.47213 * 149.98018 * 5 4 3 38 38 H 0.97005 * 119.99959 * 359.97438 * 9 7 6 39 39 H 1.09007 * 113.58319 * 335.13635 * 12 10 9 40 40 H 1.09001 * 113.65455 * 204.35077 * 12 10 9 41 41 H 0.97001 * 119.99790 * 75.48851 * 15 13 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.09005 * 113.66191 * 323.84405 * 25 24 13 44 44 H 1.08999 * 113.66553 * 94.89899 * 25 24 13 45 45 H 1.09001 * 113.58062 * 270.12702 * 26 25 24 46 46 H 1.09006 * 113.65276 * 139.34895 * 26 25 24 47 47 H 1.09000 * 113.66438 * 265.09198 * 27 24 13 48 48 H 1.08995 * 113.66448 * 36.15502 * 27 24 13 49 49 H 1.09001 * 109.46827 * 89.99493 * 29 28 6 50 50 H 1.08994 * 109.47188 * 209.99765 * 29 28 6 51 51 H 1.09000 * 109.46869 * 329.99940 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.3474 2.4924 0.0011 6 6 4.2311 -0.0339 0.0005 7 6 5.7082 -0.0966 0.0005 8 8 6.3154 -0.1224 1.0532 9 7 6.3816 -0.1250 -1.1666 10 6 7.8452 -0.1877 -1.1666 11 1 8.2881 0.2471 -0.2705 12 6 8.4043 -1.5778 -1.5201 13 6 8.3878 -1.1295 -2.9928 14 1 9.2645 -1.4480 -3.5568 15 7 7.1291 -1.4227 -3.6827 16 6 7.0595 -2.4667 -4.5661 17 1 7.9338 -3.0712 -4.7576 18 6 5.8654 -2.7481 -5.2154 19 7 4.8000 -2.0112 -4.9823 20 14 5.7707 -4.1718 -6.4210 21 1 5.3808 -5.4083 -5.6971 22 1 4.7591 -3.8697 -7.4653 23 1 7.0971 -4.3691 -7.0590 24 6 8.4806 0.3036 -2.4678 25 6 7.8793 1.4724 -3.2491 26 6 8.9795 2.3462 -2.6197 27 6 9.8098 1.0593 -2.4625 28 6 3.4715 -1.2042 -0.0059 29 6 4.1627 -2.5434 -0.0123 30 7 2.1558 -1.1487 -0.0009 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6443 2.1381 -0.0004 35 1 4.5353 2.8039 -1.0264 36 1 3.7715 3.2623 0.5146 37 1 5.2970 2.3453 0.5156 38 1 5.8970 -0.1048 -2.0067 39 1 7.7136 -2.3932 -1.3048 40 1 9.4061 -1.7583 -1.1304 41 1 6.3438 -0.8798 -3.5106 42 1 3.9656 -2.2077 -5.4363 43 1 7.9688 1.3680 -4.3305 44 1 6.8720 1.7400 -2.9300 45 1 8.6890 2.7964 -1.6704 46 1 9.4167 3.0653 -3.3124 47 1 10.3448 0.9969 -1.5149 48 1 10.4418 0.8388 -3.3227 49 1 4.3288 -2.8715 1.0138 50 1 3.5387 -3.2718 -0.5301 51 1 5.1205 -2.4555 -0.5251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078685466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:22 Heat of formation + Delta-G solvation = 28.126011 kcal Electronic energy + Delta-G solvation = -31663.951262 eV Core-core repulsion = 27756.780169 eV Total energy + Delta-G solvation = -3907.171093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.24806 -41.49169 -39.74987 -36.69568 -35.37185 -35.28500 -34.82274 -33.70733 -31.67481 -30.16676 -28.95969 -28.33468 -26.82220 -26.22362 -25.38024 -24.70480 -23.27847 -22.22877 -21.56793 -21.32408 -19.93888 -18.98513 -18.35970 -18.12695 -17.14929 -16.81008 -16.34159 -16.31699 -15.94041 -15.89937 -15.60882 -15.28772 -15.02209 -14.80599 -14.38608 -14.32375 -14.16611 -13.97384 -13.89841 -13.74924 -13.32622 -13.27345 -13.20649 -13.14908 -13.04175 -12.89577 -12.73795 -12.72093 -12.67986 -12.54328 -12.18270 -11.96581 -11.83381 -11.41389 -11.27728 -11.06357 -10.83962 -10.65961 -10.53765 -10.47593 -9.97540 -9.82436 -8.96797 -7.94444 -5.21036 -0.16560 0.14995 1.37622 1.46386 1.47639 1.54910 2.01994 2.54712 2.57888 3.12768 3.36528 3.40232 3.44669 3.56895 3.60097 3.69465 3.81972 3.93275 4.02718 4.06474 4.20314 4.28163 4.30053 4.33432 4.44207 4.49193 4.51693 4.56968 4.61329 4.65119 4.65638 4.77633 4.79890 4.85677 4.91075 4.96549 4.99910 5.01400 5.09632 5.11075 5.14556 5.15308 5.18435 5.20537 5.23168 5.49786 5.54607 5.62511 5.64641 5.66713 6.27449 6.38840 6.90213 7.03293 7.35130 8.09609 8.32812 9.27598 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007946 B = 0.005044 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.765693 B = 5549.600151 C = 7753.728114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.134 3.866 3 C -0.178 4.178 4 C -0.009 4.009 5 C -0.118 4.118 6 C -0.210 4.210 7 C 0.584 3.416 8 O -0.570 6.570 9 N -0.684 5.684 10 C 0.151 3.849 11 H 0.098 0.902 12 C -0.180 4.180 13 C 0.164 3.836 14 H 0.063 0.937 15 N -0.708 5.708 16 C -0.238 4.238 17 H 0.074 0.926 18 C -0.065 4.065 19 N -0.960 5.960 20 Si 0.963 3.037 21 H -0.294 1.294 22 H -0.298 1.298 23 H -0.271 1.271 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.094 4.094 28 C 0.160 3.840 29 C -0.103 4.103 30 N -0.513 5.513 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.180 0.820 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.402 0.598 39 H 0.041 0.959 40 H 0.104 0.896 41 H 0.372 0.628 42 H 0.248 0.752 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 12.016 9.579 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 C -0.197 4.197 4 C -0.017 4.017 5 C -0.174 4.174 6 C -0.215 4.215 7 C 0.370 3.630 8 O -0.450 6.450 9 N -0.334 5.334 10 C 0.046 3.954 11 H 0.116 0.884 12 C -0.221 4.221 13 C 0.054 3.946 14 H 0.081 0.919 15 N -0.347 5.347 16 C -0.370 4.370 17 H 0.092 0.908 18 C -0.258 4.258 19 N -0.610 5.610 20 Si 0.793 3.207 21 H -0.221 1.221 22 H -0.225 1.225 23 H -0.195 1.195 24 C -0.122 4.122 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.132 4.132 28 C 0.022 3.978 29 C -0.161 4.161 30 N -0.224 5.224 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.197 0.803 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.239 0.761 39 H 0.060 0.940 40 H 0.122 0.878 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.098 0.902 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.500 11.078 10.164 15.043 hybrid contribution -0.358 -0.592 -1.150 1.342 sum -0.858 10.486 9.014 13.854 Atomic orbital electron populations 1.20861 0.85823 1.04904 1.04181 1.22158 0.99007 0.87915 0.91233 1.22133 0.93047 1.00641 1.03904 1.20681 0.94907 0.94347 0.91731 1.20950 0.99576 0.92826 1.04054 1.20668 0.93852 0.95797 1.11203 1.18049 0.86686 0.74675 0.83571 1.90723 1.70133 1.52007 1.32087 1.45821 1.07190 1.72232 1.08141 1.21506 0.79030 0.97159 0.97715 0.88428 1.24237 1.01112 0.96143 1.00642 1.21279 0.89076 0.93502 0.90788 0.91854 1.42165 1.08300 1.35476 1.48789 1.19561 0.95721 1.06199 1.15515 0.90795 1.25362 0.95881 1.01805 1.02719 1.69766 1.01059 1.42517 1.47625 0.85293 0.77221 0.79427 0.78723 1.22128 1.22466 1.19545 1.23327 0.99667 0.94361 0.94826 1.22510 0.98372 0.95890 0.99280 1.22789 0.96093 0.96216 1.01088 1.22528 0.93357 0.94011 1.03283 1.21320 0.89551 0.94818 0.92106 1.20707 0.99395 0.92732 1.03237 1.67377 1.08545 1.30896 1.15596 0.89367 0.90673 0.87357 0.80267 0.89113 0.87322 0.92301 0.76101 0.93964 0.87763 0.79361 0.94265 0.91049 0.92964 0.89879 0.90073 0.89726 0.88737 0.89175 0.90217 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.16 71.23 0.72 -1.09 16 2 C 0.13 3.64 6.78 42.57 0.29 3.93 16 3 C -0.18 -4.20 9.43 22.32 0.21 -3.99 16 4 C -0.01 -0.24 5.95 -19.41 -0.12 -0.36 16 5 C -0.12 -2.53 9.69 71.23 0.69 -1.84 16 6 C -0.21 -7.33 5.65 -19.99 -0.11 -7.44 16 7 C 0.58 21.42 4.35 86.79 0.38 21.80 16 8 O -0.57 -23.32 16.75 -3.89 -0.07 -23.38 16 9 N -0.68 -24.28 4.71 -444.03 -2.09 -26.38 16 10 C 0.15 4.91 4.08 45.28 0.18 5.10 16 11 H 0.10 3.09 7.54 -2.39 -0.02 3.07 16 12 C -0.18 -6.26 7.68 31.23 0.24 -6.02 16 13 C 0.16 6.13 4.35 45.28 0.20 6.33 16 14 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 15 N -0.71 -33.30 4.97 -321.55 -1.60 -34.89 16 16 C -0.24 -12.66 9.98 84.03 0.84 -11.82 16 17 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 19 N -0.96 -56.21 13.06 21.65 0.28 -55.92 16 20 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.12 -3.56 0.76 -52.32 -0.04 -3.60 16 25 C -0.12 -3.57 7.18 30.88 0.22 -3.35 16 26 C -0.12 -2.69 8.08 31.23 0.25 -2.44 16 27 C -0.09 -2.10 7.84 30.88 0.24 -1.85 16 28 C 0.16 5.90 6.82 42.89 0.29 6.19 16 29 C -0.10 -3.77 9.79 71.24 0.70 -3.07 16 30 N -0.51 -17.72 10.17 -171.05 -1.74 -19.46 16 31 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 33 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.06 1.46 7.19 -2.39 -0.02 1.44 16 38 H 0.40 15.70 5.90 -92.70 -0.55 15.15 16 39 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.37 18.43 5.39 -92.71 -0.50 17.93 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.05 1.59 7.51 -2.39 -0.02 1.57 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.09 2.95 8.14 -2.39 -0.02 2.94 16 50 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 51 H 0.06 2.39 7.07 -2.39 -0.02 2.38 16 Total: -1.00 -68.81 411.40 2.37 -66.44 By element: Atomic # 1 Polarization: 52.78 SS G_CDS: -0.10 Total: 52.68 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.66 Total: -6.66 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -5.15 Total: -136.65 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.07 Total: -23.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.81 2.37 -66.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078685466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.570 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds