Wall clock time and date at job start Wed Apr 1 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38358 * 119.45394 * 2 1 4 4 C 1.38353 * 119.29797 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.85280 * 180.02562 * 4 3 2 6 6 C 1.40021 * 118.29130 * 359.97438 * 4 3 2 7 7 C 1.47837 * 120.55828 * 179.97438 * 6 4 3 8 8 O 1.21555 * 120.00278 * 90.00062 * 7 6 4 9 9 N 1.34779 * 120.00069 * 269.99913 * 7 6 4 10 10 C 1.46501 * 120.00349 * 180.02562 * 9 7 6 11 11 H 1.09007 * 112.88355 * 23.65542 * 10 9 7 12 12 C 1.54241 * 113.74643 * 252.22565 * 10 9 7 13 13 C 1.53955 * 87.18863 * 270.24841 * 12 10 9 14 14 H 1.08997 * 113.66205 * 220.75128 * 13 12 10 15 15 N 1.46498 * 113.66415 * 89.78569 * 13 12 10 16 16 C 1.36943 * 119.99752 * 105.73736 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47166 * 329.99846 * 20 18 16 24 24 C 1.52905 * 86.88352 * 335.26925 * 13 12 10 25 25 C 1.52914 * 121.14057 * 259.22722 * 24 13 12 26 26 C 1.53950 * 86.78444 * 209.37767 * 25 24 13 27 27 C 1.52911 * 121.13968 * 150.66362 * 24 13 12 28 28 C 1.39524 * 118.88393 * 0.25246 * 6 4 3 29 29 C 1.50691 * 119.71943 * 179.74964 * 28 6 4 30 30 N 1.31695 * 120.55843 * 359.49731 * 28 6 4 31 31 H 1.09002 * 109.47198 * 90.00532 * 1 2 3 32 32 H 1.09004 * 109.46633 * 209.99650 * 1 2 3 33 33 H 1.08995 * 109.47513 * 329.99719 * 1 2 3 34 34 H 1.07994 * 120.34679 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.46998 * 269.97743 * 5 4 3 36 36 H 1.08996 * 109.46885 * 29.97653 * 5 4 3 37 37 H 1.09006 * 109.47115 * 149.97895 * 5 4 3 38 38 H 0.96998 * 119.99782 * 359.97438 * 9 7 6 39 39 H 1.09004 * 113.58278 * 155.69827 * 12 10 9 40 40 H 1.08994 * 113.67408 * 24.81387 * 12 10 9 41 41 H 0.97001 * 120.00384 * 286.02091 * 15 13 12 42 42 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.66024 * 323.85226 * 25 24 13 44 44 H 1.08994 * 113.66194 * 94.90621 * 25 24 13 45 45 H 1.08995 * 113.58271 * 270.13143 * 26 25 24 46 46 H 1.08996 * 113.57661 * 139.32983 * 26 25 24 47 47 H 1.09005 * 113.65882 * 265.09435 * 27 24 13 48 48 H 1.08996 * 113.66010 * 36.14620 * 27 24 13 49 49 H 1.09003 * 109.47609 * 90.00004 * 29 28 6 50 50 H 1.09003 * 109.47035 * 209.99984 * 29 28 6 51 51 H 1.09004 * 109.47129 * 330.00060 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5709 1.2010 -0.0005 5 6 4.3473 2.4926 0.0000 6 6 4.2312 -0.0338 -0.0005 7 6 5.7083 -0.0963 -0.0016 8 8 6.3164 -0.1215 1.0506 9 7 6.3806 -0.1253 -1.1694 10 6 7.8443 -0.1878 -1.1706 11 1 8.2514 -0.6082 -0.2509 12 6 8.5219 1.1288 -1.6024 13 6 8.4615 0.5979 -3.0462 14 1 9.3608 0.8046 -3.6263 15 7 7.2311 0.9591 -3.7546 16 6 7.2567 1.9301 -4.7199 17 1 8.1848 2.4264 -4.9621 18 6 6.0897 2.2764 -5.3871 19 7 4.9585 1.6718 -5.0915 20 14 6.1247 3.6004 -6.7043 21 1 6.4003 2.9782 -8.0243 22 1 4.8107 4.2908 -6.7473 23 1 7.1909 4.5846 -6.3887 24 6 8.4312 -0.8056 -2.4402 25 6 9.6901 -1.6721 -2.3889 26 6 8.7511 -2.8891 -2.4743 27 6 7.7289 -1.9606 -3.1550 28 6 3.4717 -1.2042 -0.0053 29 6 4.1629 -2.5432 -0.0111 30 7 2.1559 -1.1485 0.0001 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6442 2.1381 -0.0004 35 1 4.5344 2.8045 -1.0276 36 1 3.7717 3.2622 0.5142 37 1 5.2974 2.3453 0.5137 38 1 5.8954 -0.1055 -2.0090 39 1 9.5370 1.2422 -1.2217 40 1 7.9061 2.0127 -1.4369 41 1 6.3974 0.5134 -3.5370 42 1 4.1431 1.9136 -5.5580 43 1 10.3366 -1.5564 -3.2588 44 1 10.2310 -1.6024 -1.4451 45 1 8.4252 -3.2576 -1.5017 46 1 9.1218 -3.6809 -3.1251 47 1 6.7031 -2.1213 -2.8233 48 1 7.8242 -1.9260 -4.2403 49 1 4.3297 -2.8705 1.0151 50 1 3.5385 -3.2721 -0.5279 51 1 5.1203 -2.4557 -0.5248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078685469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:35 Heat of formation + Delta-G solvation = 45.007401 kcal Electronic energy + Delta-G solvation = -31642.360252 eV Core-core repulsion = 27735.921191 eV Total energy + Delta-G solvation = -3906.439061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94560 -40.26191 -38.40539 -35.30286 -34.12232 -33.78564 -33.56902 -32.17370 -29.87994 -29.10584 -27.78022 -27.26375 -25.49152 -24.67155 -24.11481 -23.18096 -22.01378 -21.05612 -20.26146 -20.01650 -18.51826 -17.21178 -17.03781 -16.90214 -15.79910 -15.27933 -15.21466 -14.83929 -14.74805 -14.52276 -14.20293 -13.85135 -13.66766 -13.24362 -13.15415 -13.12215 -12.98357 -12.89575 -12.64972 -12.51811 -12.22128 -12.10707 -12.08978 -11.91178 -11.71009 -11.57548 -11.56601 -11.44362 -10.99358 -10.91267 -10.69896 -10.26286 -10.13291 -10.03080 -9.84138 -9.72288 -9.40528 -9.33083 -9.25543 -8.91355 -8.69101 -8.57962 -7.08424 -5.89562 -3.18366 0.99082 1.31208 2.76307 3.33561 3.36125 3.42668 3.43162 3.72785 4.18678 4.46159 4.62285 4.64687 4.72540 4.82582 4.95199 5.02930 5.09945 5.14212 5.30742 5.34989 5.37751 5.42674 5.43816 5.52840 5.54898 5.59632 5.62772 5.69296 5.77156 5.83818 5.85448 5.86804 5.92914 5.98593 6.05896 6.08596 6.11313 6.13249 6.22042 6.23161 6.30483 6.34243 6.39631 6.58375 6.65805 6.71793 6.72626 6.91255 7.04608 7.62272 7.81531 8.02077 8.28802 8.44454 9.40009 9.95034 10.28665 11.32547 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.004954 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.556789 B = 5650.485344 C = 7773.215703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.145 3.855 3 C -0.182 4.182 4 C 0.011 3.989 5 C -0.126 4.126 6 C -0.184 4.184 7 C 0.577 3.423 8 O -0.543 6.543 9 N -0.688 5.688 10 C 0.149 3.851 11 H 0.093 0.907 12 C -0.185 4.185 13 C 0.180 3.820 14 H 0.065 0.935 15 N -0.700 5.700 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.132 4.132 25 C -0.103 4.103 26 C -0.141 4.141 27 C -0.116 4.116 28 C 0.172 3.828 29 C -0.108 4.108 30 N -0.491 5.491 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.379 0.621 42 H 0.256 0.744 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -5.668 9.635 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.008 3.992 3 C -0.202 4.202 4 C 0.003 3.997 5 C -0.183 4.183 6 C -0.189 4.189 7 C 0.362 3.638 8 O -0.421 6.421 9 N -0.339 5.339 10 C 0.043 3.957 11 H 0.111 0.889 12 C -0.227 4.227 13 C 0.068 3.932 14 H 0.083 0.917 15 N -0.339 5.339 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.179 4.179 27 C -0.153 4.153 28 C 0.033 3.967 29 C -0.165 4.165 30 N -0.202 5.202 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.248 0.752 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.214 0.786 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.599 -6.299 10.212 12.104 hybrid contribution -0.159 1.561 -1.108 1.921 sum -1.757 -4.738 9.105 10.413 Atomic orbital electron populations 1.20731 0.88696 1.03310 1.03320 1.21338 0.96973 0.88125 0.92752 1.21718 0.93699 0.99444 1.05323 1.20308 0.93784 0.94517 0.91090 1.20960 0.99858 0.93130 1.04335 1.20593 0.94410 0.94665 1.09274 1.17941 0.86246 0.75591 0.84039 1.90758 1.69385 1.50497 1.31412 1.45817 1.06805 1.72636 1.08676 1.21531 0.79385 0.97565 0.97181 0.88936 1.24339 0.99694 0.97264 1.01436 1.21041 0.91389 0.90270 0.90542 0.91709 1.42098 1.04702 1.44626 1.42494 1.19258 0.94528 1.11994 1.11441 0.90932 1.24717 0.95538 1.00083 1.00201 1.69632 0.98762 1.44753 1.44755 0.86194 0.76758 0.81388 0.81855 1.21689 1.21814 1.20750 1.23424 0.97626 0.95710 0.96653 1.22479 0.94969 0.94835 1.01859 1.22861 0.97909 0.96487 1.00614 1.22512 0.97815 0.94715 1.00278 1.21191 0.88959 0.94419 0.92096 1.20782 0.99911 0.92405 1.03408 1.67311 1.08761 1.29134 1.14985 0.90084 0.90484 0.90685 0.84409 0.88790 0.90723 0.90843 0.75158 0.90414 0.90964 0.78580 0.93412 0.89639 0.91632 0.90750 0.91907 0.92074 0.89436 0.89984 0.89862 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.16 36.01 0.37 -0.67 16 2 C 0.15 2.04 6.78 -82.51 -0.56 1.48 16 3 C -0.18 -2.55 9.43 -39.49 -0.37 -2.92 16 4 C 0.01 0.18 5.95 -103.91 -0.62 -0.44 16 5 C -0.13 -1.88 9.69 36.01 0.35 -1.53 16 6 C -0.18 -3.13 5.65 -104.82 -0.59 -3.72 16 7 C 0.58 10.23 4.35 -12.33 -0.05 10.18 16 8 O -0.54 -10.82 16.70 5.32 0.09 -10.73 16 9 N -0.69 -11.86 4.69 -54.16 -0.25 -12.11 16 10 C 0.15 2.44 4.13 -67.33 -0.28 2.16 16 11 H 0.09 1.52 7.46 -51.93 -0.39 1.14 16 12 C -0.19 -3.19 7.71 -25.59 -0.20 -3.38 16 13 C 0.18 3.35 4.35 -67.48 -0.29 3.05 16 14 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 15 N -0.70 -15.93 4.98 -52.99 -0.26 -16.19 16 16 C -0.24 -6.24 9.97 -15.06 -0.15 -6.39 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.11 13.06 55.49 0.72 -25.38 16 20 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.13 -2.04 0.78 -154.71 -0.12 -2.16 16 25 C -0.10 -1.32 7.84 -26.28 -0.21 -1.52 16 26 C -0.14 -1.76 8.08 -25.75 -0.21 -1.97 16 27 C -0.12 -1.76 7.24 -26.28 -0.19 -1.95 16 28 C 0.17 2.76 6.82 -82.18 -0.56 2.20 16 29 C -0.11 -1.45 9.79 36.00 0.35 -1.10 16 30 N -0.49 -7.73 10.17 -5.42 -0.06 -7.79 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.07 1.16 7.19 -51.93 -0.37 0.79 16 38 H 0.41 7.69 5.95 -40.82 -0.24 7.45 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.38 8.98 5.34 -40.82 -0.22 8.77 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.96 7.58 -51.93 -0.39 0.57 16 48 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.07 1.03 7.07 -51.93 -0.37 0.66 16 LS Contribution 411.46 15.07 6.20 6.20 Total: -1.00 -30.01 411.46 -10.30 -40.30 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -8.29 Total: 18.33 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.43 Total: -9.03 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.15 Total: -61.47 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.01 -10.30 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078685469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.309 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds