Wall clock time and date at job start Wed Apr 1 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31702 * 119.71034 * 2 1 4 4 C 1.31927 * 121.87548 * 180.31426 * 3 2 1 5 5 C 1.50699 * 119.46272 * 179.70959 * 4 3 2 6 6 C 1.52996 * 109.47276 * 94.72253 * 5 4 3 7 7 C 1.52996 * 109.47443 * 214.72898 * 5 4 3 8 8 C 1.38353 * 121.07687 * 359.42885 * 4 3 2 9 9 C 1.38350 * 119.30794 * 0.27826 * 8 4 3 10 10 C 1.39511 * 119.72211 * 179.75110 * 2 1 3 11 11 C 1.47842 * 120.55745 * 359.97438 * 10 2 1 12 12 O 1.21551 * 120.00518 * 320.24220 * 11 10 2 13 13 N 1.34780 * 119.99717 * 140.23895 * 11 10 2 14 14 C 1.47280 * 136.54557 * 4.94267 * 13 11 10 15 15 C 1.54086 * 87.60887 * 151.34830 * 14 13 11 16 16 H 1.08997 * 115.04657 * 141.62898 * 15 14 13 17 17 C 1.53063 * 111.38727 * 273.97378 * 15 14 13 18 18 C 1.52007 * 109.69075 * 142.51599 * 17 15 14 19 19 N 1.46541 * 108.10461 * 301.56289 * 18 17 15 20 20 C 1.36935 * 119.73567 * 236.29109 * 19 18 17 21 21 H 1.07994 * 120.00027 * 29.09470 * 20 19 18 22 22 C 1.38813 * 119.99965 * 209.08372 * 20 19 18 23 23 N 1.31618 * 120.00153 * 9.68769 * 22 20 19 24 24 Si 1.86799 * 120.00273 * 189.68055 * 22 20 19 25 25 H 1.48503 * 109.46684 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46987 * 120.00274 * 24 22 20 27 27 H 1.48495 * 109.47249 * 240.00604 * 24 22 20 28 28 C 1.45699 * 120.52296 * 56.31714 * 19 18 17 29 29 C 1.46470 * 136.53820 * 184.56234 * 13 11 10 30 30 H 1.09000 * 111.44098 * 96.40447 * 29 13 11 31 31 H 1.09001 * 109.47326 * 272.98992 * 1 2 3 32 32 H 1.09004 * 109.47552 * 32.99957 * 1 2 3 33 33 H 1.09005 * 109.46852 * 152.99589 * 1 2 3 34 34 H 1.09002 * 109.46679 * 334.72664 * 5 4 3 35 35 H 1.09002 * 109.46931 * 60.00565 * 6 5 4 36 36 H 1.08997 * 109.47787 * 300.00498 * 6 5 4 37 37 H 1.09003 * 109.47391 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.46859 * 300.00114 * 7 5 4 39 39 H 1.09002 * 109.47056 * 59.99404 * 7 5 4 40 40 H 1.08998 * 109.47603 * 179.97438 * 7 5 4 41 41 H 1.08006 * 120.34413 * 180.30094 * 8 4 3 42 42 H 1.07999 * 120.86086 * 180.02562 * 9 8 4 43 43 H 1.09004 * 113.52760 * 266.02549 * 14 13 11 44 44 H 1.09001 * 113.53228 * 36.66163 * 14 13 11 45 45 H 1.09003 * 109.51902 * 262.32209 * 17 15 14 46 46 H 1.09000 * 109.51745 * 22.47783 * 17 15 14 47 47 H 1.08990 * 109.88410 * 181.85916 * 18 17 15 48 48 H 1.09004 * 109.71337 * 61.16152 * 18 17 15 49 49 H 0.96999 * 120.00613 * 179.97438 * 23 22 20 50 50 H 1.09002 * 108.79077 * 199.09240 * 28 19 18 51 51 H 1.09003 * 108.69910 * 80.82235 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1439 0.0000 4 6 3.4780 1.1937 -0.0061 5 6 4.1691 2.5329 -0.0124 6 6 4.5151 2.9350 1.4226 7 6 5.4527 2.4406 -0.8399 8 6 4.2365 0.0366 -0.0011 9 6 3.5988 -1.1911 0.0047 10 6 2.1987 -1.2116 0.0053 11 6 1.4657 -2.4955 0.0114 12 8 0.4619 -2.6191 0.6856 13 7 1.9106 -3.5289 -0.7306 14 6 3.0820 -3.8108 -1.5776 15 6 2.9053 -5.2980 -1.2153 16 1 3.0969 -5.9972 -2.0292 17 6 3.6171 -5.6415 0.0955 18 6 2.7848 -6.6397 0.8839 19 7 1.4704 -6.0412 1.1321 20 6 1.0108 -5.9202 2.4163 21 1 1.7098 -5.8048 3.2314 22 6 -0.3537 -5.9456 2.6704 23 7 -1.1953 -6.2747 1.7135 24 14 -0.9954 -5.5129 4.3705 25 1 0.1460 -5.1808 5.2606 26 1 -1.9039 -4.3423 4.2735 27 1 -1.7383 -6.6711 4.9288 28 6 0.6486 -5.5745 0.0232 29 6 1.4507 -4.8815 -1.0536 30 1 0.9200 -4.9053 -2.0054 31 1 -0.3634 0.0536 1.0263 32 1 -0.3634 0.8619 -0.5597 33 1 -0.3633 -0.9157 -0.4666 34 1 3.5079 3.2809 -0.4500 35 1 5.1764 2.1871 1.8601 36 1 3.6007 3.0009 2.0121 37 1 5.0146 3.9039 1.4181 38 1 6.1139 1.6925 -0.4024 39 1 5.2061 2.1541 -1.8622 40 1 5.9524 3.4093 -0.8448 41 1 5.3152 0.0913 -0.0013 42 1 4.1661 -2.1101 0.0092 43 1 2.9167 -3.5977 -2.6338 44 1 4.0076 -3.3775 -1.1985 45 1 4.5907 -6.0804 -0.1229 46 1 3.7498 -4.7351 0.6862 47 1 3.2728 -6.8615 1.8329 48 1 2.6678 -7.5574 0.3074 49 1 -2.1487 -6.2929 1.8911 50 1 -0.0975 -4.8789 0.4076 51 1 0.1362 -6.4302 -0.4164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084667763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:12 Heat of formation + Delta-G solvation = 63.050244 kcal Electronic energy + Delta-G solvation = -31530.055290 eV Core-core repulsion = 27624.398625 eV Total energy + Delta-G solvation = -3905.656665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.98629 -40.16742 -37.71274 -35.76426 -35.24370 -33.04229 -32.13576 -31.50051 -30.15017 -29.16041 -27.67341 -27.16817 -26.84319 -24.67594 -23.83769 -23.02611 -22.31192 -21.17316 -20.62416 -19.80555 -17.99757 -17.30272 -16.89510 -16.13784 -15.86692 -15.73949 -15.36818 -14.76436 -14.44480 -14.25899 -14.19508 -13.75977 -13.55679 -13.43297 -13.37552 -13.21498 -12.99137 -12.84105 -12.50521 -12.43596 -12.30664 -12.14421 -11.95159 -11.85843 -11.47702 -11.41959 -11.35561 -11.18027 -11.06643 -10.68133 -10.65624 -10.47256 -10.15992 -9.94347 -9.82404 -9.78636 -9.72068 -9.41851 -8.94127 -8.79123 -8.30075 -8.12187 -6.52110 -5.63395 -3.09898 0.81250 1.19575 3.14091 3.22080 3.48252 3.56005 3.56795 3.79569 3.96848 4.44986 4.59440 4.60202 4.65737 4.72390 4.82127 4.86632 4.96614 5.02893 5.16748 5.31414 5.37819 5.43413 5.47437 5.48953 5.51566 5.52888 5.60087 5.63454 5.67185 5.71501 5.75382 5.84962 5.87305 5.92873 5.98483 6.00840 6.10040 6.12005 6.21432 6.28433 6.33348 6.37623 6.51267 6.58126 6.65397 6.79156 6.99837 7.50790 7.80288 7.92673 7.95823 8.27677 8.61748 8.69704 9.38735 10.01231 10.50233 11.44519 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.003676 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.301801 B = 7614.493505 C = 8630.943666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.182 3.818 3 N -0.487 5.487 4 C 0.150 3.850 5 C -0.047 4.047 6 C -0.141 4.141 7 C -0.147 4.147 8 C -0.185 4.185 9 C -0.042 4.042 10 C -0.170 4.170 11 C 0.586 3.414 12 O -0.498 6.498 13 N -0.627 5.627 14 C 0.092 3.908 15 C -0.112 4.112 16 H 0.093 0.907 17 C -0.114 4.114 18 C 0.147 3.853 19 N -0.584 5.584 20 C -0.251 4.251 21 H 0.060 0.940 22 C 0.014 3.986 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.288 1.288 27 H -0.292 1.292 28 C 0.168 3.832 29 C 0.119 3.881 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.019 0.981 49 H 0.251 0.749 50 H 0.102 0.898 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.324 13.263 -9.684 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.044 3.956 3 N -0.197 5.197 4 C 0.012 3.988 5 C -0.066 4.066 6 C -0.199 4.199 7 C -0.205 4.205 8 C -0.205 4.205 9 C -0.068 4.068 10 C -0.176 4.176 11 C 0.374 3.626 12 O -0.372 6.372 13 N -0.363 5.363 14 C -0.031 4.031 15 C -0.132 4.132 16 H 0.111 0.889 17 C -0.153 4.153 18 C 0.021 3.979 19 N -0.307 5.307 20 C -0.380 4.380 21 H 0.078 0.922 22 C -0.185 4.185 23 N -0.549 5.549 24 Si 0.732 3.268 25 H -0.205 1.205 26 H -0.215 1.215 27 H -0.219 1.219 28 C 0.042 3.958 29 C 0.015 3.985 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.061 0.939 50 H 0.120 0.880 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.993 14.144 -9.150 21.275 hybrid contribution 0.205 -0.507 0.745 0.924 sum 13.199 13.638 -8.405 20.757 Atomic orbital electron populations 1.20815 0.87816 1.03400 1.04052 1.21351 0.97242 0.86435 0.90601 1.67381 1.09270 1.28725 1.14289 1.21325 0.89321 0.95265 0.92877 1.20065 0.96378 0.92782 0.97409 1.21802 1.01951 1.01363 0.94810 1.21923 0.96412 1.02302 0.99813 1.21846 1.01418 0.92420 1.04785 1.21847 0.93256 0.98675 0.92991 1.20942 0.94561 0.95198 1.06866 1.17322 0.84230 0.81184 0.79858 1.90897 1.25029 1.81558 1.39692 1.49346 1.25597 1.14767 1.46597 1.23440 0.89543 0.95250 0.94899 1.22707 0.96930 0.94691 0.98835 0.88876 1.21629 0.97598 1.01225 0.94861 1.20535 0.87525 0.92806 0.97055 1.43436 1.15971 1.68109 1.03173 1.19089 0.90500 1.44411 0.84034 0.92242 1.25016 0.96761 0.99555 0.97161 1.69977 1.01786 1.51473 1.31672 0.86238 0.78768 0.77591 0.84223 1.20520 1.21516 1.21862 1.20210 0.92123 0.97089 0.86362 1.22648 0.96068 0.80005 0.99731 0.90866 0.89483 0.90961 0.89762 0.89208 0.92415 0.92182 0.91856 0.92052 0.92334 0.91819 0.84418 0.84311 0.90469 0.91163 0.92705 0.92280 0.92589 0.96311 0.93872 0.87999 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.17 36.00 0.33 -1.30 16 2 C 0.18 2.98 6.81 -82.18 -0.56 2.42 16 3 N -0.49 -7.33 10.17 -5.42 -0.06 -7.38 16 4 C 0.15 1.88 5.79 -82.51 -0.48 1.40 16 5 C -0.05 -0.44 3.23 -91.78 -0.30 -0.73 16 6 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 7 C -0.15 -1.01 8.62 37.16 0.32 -0.69 16 8 C -0.19 -2.15 9.16 -39.50 -0.36 -2.51 16 9 C -0.04 -0.57 9.05 -38.87 -0.35 -0.92 16 10 C -0.17 -2.86 5.74 -104.82 -0.60 -3.46 16 11 C 0.59 11.73 6.97 -12.33 -0.09 11.64 16 12 O -0.50 -12.23 14.14 5.32 0.08 -12.16 16 13 N -0.63 -11.21 3.32 -188.98 -0.63 -11.84 16 14 C 0.09 1.20 7.16 -11.54 -0.08 1.12 16 15 C -0.11 -1.65 4.58 -90.44 -0.41 -2.07 16 16 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.11 -1.84 5.60 -27.20 -0.15 -1.99 16 18 C 0.15 3.01 6.44 -4.52 -0.03 2.98 16 19 N -0.58 -14.85 3.01 -175.59 -0.53 -15.38 16 20 C -0.25 -7.19 9.49 -15.06 -0.14 -7.34 16 21 H 0.06 1.71 7.84 -52.49 -0.41 1.29 16 22 C 0.01 0.40 5.04 -17.43 -0.09 0.32 16 23 N -0.90 -27.37 10.92 55.49 0.61 -26.76 16 24 Si 0.90 23.46 29.56 -169.99 -5.03 18.44 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 C 0.17 4.13 4.53 -5.43 -0.02 4.11 16 29 C 0.12 2.23 4.03 -77.81 -0.31 1.91 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.44 6.29 -51.93 -0.33 1.12 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.38 6.48 -51.93 -0.34 0.05 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.14 1.18 6.29 -52.48 -0.33 0.85 16 42 H 0.14 1.71 5.89 -52.49 -0.31 1.40 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.79 5.74 -51.93 -0.30 0.50 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 47 H 0.06 1.14 7.89 -51.93 -0.41 0.73 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.10 2.95 5.08 -51.93 -0.26 2.69 16 51 H 0.03 0.80 7.95 -51.93 -0.41 0.39 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -34.44 394.32 -10.73 -45.17 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.13 Total: -0.06 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.99 Total: 4.02 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.61 Total: -61.36 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.03 Total: 18.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.44 -10.73 -45.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084667763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.225 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds