Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38397 * 120.85527 * 2 1 4 4 C 1.38312 * 119.30690 * 180.02562 * 3 2 1 5 5 N 1.31960 * 121.07821 * 359.97438 * 4 3 2 6 6 C 1.31661 * 121.87836 * 359.72905 * 5 4 3 7 7 C 1.39559 * 120.56779 * 0.54008 * 6 5 4 8 8 C 1.47838 * 120.56108 * 179.75530 * 7 6 5 9 9 O 1.21555 * 120.00432 * 132.13523 * 8 7 6 10 10 N 1.34778 * 119.99963 * 312.12549 * 8 7 6 11 11 C 1.47185 * 125.65866 * 4.58590 * 10 8 7 12 12 C 1.53702 * 107.10877 * 178.46762 * 11 10 8 13 13 C 1.54518 * 103.64523 * 338.45250 * 12 11 10 14 14 C 1.47486 * 125.66340 * 184.55073 * 10 8 7 15 15 H 1.08997 * 110.34723 * 85.08607 * 14 10 8 16 16 C 1.52991 * 110.35370 * 322.90522 * 14 10 8 17 17 C 1.52265 * 110.63910 * 96.56739 * 12 11 10 18 18 C 1.53315 * 109.42372 * 63.78062 * 17 12 11 19 19 N 1.46928 * 108.70779 * 53.50792 * 18 17 12 20 20 C 1.36928 * 120.56331 * 125.74514 * 19 18 17 21 21 H 1.08004 * 120.00044 * 330.74023 * 20 19 18 22 22 C 1.38812 * 120.00056 * 150.73537 * 20 19 18 23 23 N 1.31617 * 120.00108 * 339.76982 * 22 20 19 24 24 Si 1.86799 * 120.00230 * 159.75927 * 22 20 19 25 25 H 1.48497 * 109.47283 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47277 * 300.00874 * 24 22 20 27 27 H 1.48507 * 109.46905 * 59.99999 * 24 22 20 28 28 C 1.46935 * 118.87258 * 306.02026 * 19 18 17 29 29 C 1.52269 * 110.62702 * 220.34798 * 12 11 10 30 30 H 1.09005 * 109.46897 * 268.83930 * 1 2 3 31 31 H 1.09002 * 109.47162 * 28.83933 * 1 2 3 32 32 H 1.08995 * 109.46982 * 148.84025 * 1 2 3 33 33 H 1.08002 * 120.35034 * 0.02562 * 3 2 1 34 34 H 1.07998 * 119.46311 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.71476 * 180.26505 * 6 5 4 36 36 H 1.08990 * 109.90836 * 59.09855 * 11 10 8 37 37 H 1.08999 * 110.05997 * 297.91989 * 11 10 8 38 38 H 1.09004 * 111.01107 * 152.88448 * 13 12 11 39 39 H 1.09001 * 111.01717 * 276.76022 * 13 12 11 40 40 H 1.08991 * 109.47430 * 61.45067 * 16 14 10 41 41 H 1.09003 * 109.46806 * 181.45489 * 16 14 10 42 42 H 1.09005 * 109.47288 * 301.44628 * 16 14 10 43 43 H 1.09000 * 109.48090 * 303.79267 * 17 12 11 44 44 H 1.08997 * 109.48252 * 183.76869 * 17 12 11 45 45 H 1.08999 * 109.59743 * 293.74144 * 18 17 12 46 46 H 1.09000 * 109.72626 * 173.35337 * 18 17 12 47 47 H 0.97002 * 120.00390 * 180.02562 * 23 22 20 48 48 H 1.08995 * 109.59471 * 173.74972 * 28 19 18 49 49 H 1.08994 * 109.59984 * 294.22136 * 28 19 18 50 50 H 1.09007 * 109.48107 * 56.20051 * 29 12 11 51 51 H 1.08996 * 109.48333 * 176.23159 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2498 0.0025 -0.0005 6 6 3.6197 -1.1535 0.0052 7 6 2.2250 -1.2017 0.0003 8 6 1.5177 -2.4999 0.0014 9 8 0.6039 -2.6936 0.7792 10 7 1.8859 -3.4686 -0.8603 11 6 3.0289 -3.4050 -1.7854 12 6 3.0788 -4.7458 -2.5353 13 6 2.2983 -5.7087 -1.6127 14 6 1.2108 -4.7686 -1.0322 15 1 0.3780 -4.6739 -1.7289 16 6 0.7176 -5.2946 0.3171 17 6 2.3838 -4.6318 -3.8852 18 6 3.1416 -3.6317 -4.7661 19 7 4.5545 -4.0305 -4.8236 20 6 5.1759 -4.2205 -6.0289 21 1 4.6043 -4.5450 -6.8859 22 6 6.5404 -3.9959 -6.1494 23 7 7.1636 -3.2423 -5.2685 24 14 7.4923 -4.7634 -7.5615 25 1 8.9219 -4.3736 -7.4646 26 1 7.3769 -6.2422 -7.4904 27 1 6.9347 -4.2851 -8.8521 28 6 5.2878 -4.2281 -3.5657 29 6 4.5175 -5.2191 -2.6928 30 1 -0.3633 -0.0208 1.0275 31 1 -0.3633 0.9002 -0.4957 32 1 -0.3633 -0.8794 -0.5317 33 1 1.6966 2.1346 0.0004 34 1 4.1558 2.0763 -0.0001 35 1 4.1872 -2.0725 0.0094 36 1 3.9522 -3.2586 -1.2250 37 1 2.8914 -2.5883 -2.4940 38 1 1.8485 -6.5199 -2.1853 39 1 2.9398 -6.0991 -0.8226 40 1 -0.0056 -4.5957 0.7372 41 1 0.2445 -6.2666 0.1771 42 1 1.5625 -5.3965 0.9982 43 1 1.3607 -4.2853 -3.7393 44 1 2.3712 -5.6074 -4.3712 45 1 3.0609 -2.6327 -4.3376 46 1 2.7200 -3.6334 -5.7712 47 1 8.1171 -3.0850 -5.3528 48 1 6.2799 -4.6256 -3.7794 49 1 5.3777 -3.2766 -3.0416 50 1 4.9884 -5.2837 -1.7119 51 1 4.5274 -6.2008 -3.1663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086912936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = 24.084050 kcal Electronic energy + Delta-G solvation = -31823.908553 eV Core-core repulsion = 27916.562188 eV Total energy + Delta-G solvation = -3907.346366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.07643 -39.91487 -38.35035 -36.02720 -33.98448 -33.16488 -32.62957 -30.97281 -30.69997 -30.00245 -28.07693 -27.25268 -25.93316 -24.57960 -24.04466 -22.86407 -22.34814 -21.61994 -20.69745 -19.43411 -18.32390 -17.22386 -16.74841 -16.73107 -16.48203 -16.10367 -15.01262 -14.82517 -14.58357 -14.41782 -14.18702 -13.96002 -13.81550 -13.52419 -13.32313 -13.10433 -12.99857 -12.92265 -12.85803 -12.78553 -12.48805 -12.16009 -11.94004 -11.84372 -11.72313 -11.48055 -11.30510 -11.15851 -10.90125 -10.72826 -10.49277 -10.31607 -10.23350 -10.00980 -9.83629 -9.63972 -9.58395 -9.38164 -9.36448 -9.22145 -8.56860 -8.46296 -6.67249 -5.81486 -3.23132 0.69324 1.08878 2.64452 2.94577 3.37219 3.43834 3.44892 3.68317 4.22759 4.39849 4.48540 4.51717 4.57549 4.64910 4.83537 4.90995 4.95566 5.19992 5.26355 5.26720 5.30884 5.35874 5.39184 5.44530 5.49869 5.57841 5.62324 5.69018 5.72596 5.77903 5.89153 5.89949 5.94033 6.00511 6.04853 6.09014 6.17679 6.21755 6.26296 6.44754 6.46756 6.52836 6.55714 6.60368 6.67899 6.78833 6.92082 7.28159 7.48988 7.58390 7.79342 7.81977 8.11128 8.43331 9.18948 9.82699 10.40360 11.26947 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.003741 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.476826 B = 7483.249096 C = 8989.323338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.005 3.995 3 C -0.183 4.183 4 C 0.119 3.881 5 N -0.484 5.484 6 C 0.140 3.860 7 C -0.182 4.182 8 C 0.583 3.417 9 O -0.535 6.535 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.053 4.053 13 C -0.124 4.124 14 C 0.136 3.864 15 H 0.075 0.925 16 C -0.163 4.163 17 C -0.120 4.120 18 C 0.145 3.855 19 N -0.588 5.588 20 C -0.259 4.259 21 H 0.063 0.937 22 C 0.008 3.992 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.291 1.291 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.172 3.828 29 C -0.127 4.127 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.054 0.946 47 H 0.255 0.745 48 H 0.081 0.919 49 H 0.019 0.981 50 H 0.052 0.948 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 2.860 11.623 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.003 4.003 3 C -0.202 4.202 4 C -0.037 4.037 5 N -0.193 5.193 6 C -0.018 4.018 7 C -0.187 4.187 8 C 0.371 3.629 9 O -0.413 6.413 10 N -0.338 5.338 11 C -0.017 4.017 12 C -0.054 4.054 13 C -0.162 4.162 14 C 0.034 3.966 15 H 0.093 0.907 16 C -0.221 4.221 17 C -0.159 4.159 18 C 0.018 3.982 19 N -0.311 5.311 20 C -0.389 4.389 21 H 0.081 0.919 22 C -0.191 4.191 23 N -0.540 5.540 24 Si 0.727 3.273 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.046 3.954 29 C -0.167 4.167 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.070 0.930 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.512 2.892 12.063 16.923 hybrid contribution -0.138 -0.312 -0.829 0.897 sum -11.650 2.580 11.233 16.388 Atomic orbital electron populations 1.20852 0.89595 1.03143 1.03550 1.20320 0.97010 0.91442 0.91551 1.21996 0.95632 0.98428 1.04183 1.22974 0.91692 0.96549 0.92487 1.67747 1.40695 0.98226 1.12583 1.23120 0.90221 0.96806 0.91682 1.20833 0.95544 0.94069 1.08299 1.17631 0.82837 0.82576 0.79830 1.90705 1.30634 1.80745 1.39239 1.48625 1.30832 1.16216 1.38122 1.22427 0.87927 0.99721 0.91628 1.20936 0.97286 0.92555 0.94638 1.22997 0.96798 0.97311 0.99075 1.21967 0.95121 0.82079 0.97467 0.90693 1.22197 1.02472 1.01304 0.96110 1.21929 0.97554 1.01602 0.94792 1.20946 0.86451 0.93741 0.97049 1.43967 1.05974 1.78750 1.02368 1.19080 0.91539 1.39338 0.88895 0.91913 1.25023 0.98321 0.97908 0.97892 1.70061 1.09446 1.36729 1.37725 0.86453 0.79069 0.79481 0.82272 1.21650 1.21026 1.20889 1.20662 0.95533 0.94223 0.84995 1.22049 0.93214 1.01437 0.99951 0.89730 0.91055 0.90814 0.84226 0.82291 0.82156 0.91097 0.90447 0.89951 0.90654 0.89647 0.92318 0.92771 0.93140 0.91724 0.96633 0.92727 0.93553 0.90061 0.96273 0.92974 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.08 36.01 0.33 -0.86 16 2 C 0.01 0.06 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.90 9.80 -39.50 -0.39 -2.29 16 4 C 0.12 1.37 11.17 -17.47 -0.20 1.18 16 5 N -0.48 -6.99 10.35 -12.91 -0.13 -7.12 16 6 C 0.14 1.99 9.69 -17.13 -0.17 1.83 16 7 C -0.18 -2.54 5.41 -104.82 -0.57 -3.11 16 8 C 0.58 8.56 6.42 -12.33 -0.08 8.48 16 9 O -0.53 -8.61 13.28 5.32 0.07 -8.54 16 10 N -0.60 -8.43 3.25 -164.30 -0.53 -8.97 16 11 C 0.10 1.56 3.96 -3.30 -0.01 1.54 16 12 C -0.05 -0.80 0.53 -154.09 -0.08 -0.88 16 13 C -0.12 -1.52 5.41 -24.86 -0.13 -1.66 16 14 C 0.14 1.71 3.46 -66.32 -0.23 1.48 16 15 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 16 C -0.16 -1.95 8.65 37.15 0.32 -1.63 16 17 C -0.12 -1.90 4.78 -26.94 -0.13 -2.03 16 18 C 0.14 2.87 6.23 -3.65 -0.02 2.84 16 19 N -0.59 -13.94 2.98 -172.43 -0.51 -14.45 16 20 C -0.26 -6.89 9.53 -15.06 -0.14 -7.03 16 21 H 0.06 1.65 7.91 -52.48 -0.42 1.24 16 22 C 0.01 0.22 4.81 -17.43 -0.08 0.14 16 23 N -0.90 -25.45 11.51 55.49 0.64 -24.81 16 24 Si 0.90 21.24 29.60 -169.99 -5.03 16.21 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 C 0.17 3.81 5.03 -3.86 -0.02 3.79 16 29 C -0.13 -2.18 4.69 -27.16 -0.13 -2.31 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.16 2.18 5.97 -52.48 -0.31 1.87 16 36 H 0.07 1.06 5.31 -51.93 -0.28 0.79 16 37 H 0.08 1.28 6.07 -51.93 -0.32 0.97 16 38 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 39 H 0.07 0.91 7.92 -51.93 -0.41 0.49 16 40 H 0.08 1.17 5.88 -51.93 -0.31 0.86 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.72 7.49 -51.93 -0.39 0.33 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.32 6.53 -51.93 -0.34 -0.02 16 46 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.08 2.06 6.24 -51.93 -0.32 1.73 16 49 H 0.02 0.45 7.47 -51.93 -0.39 0.06 16 50 H 0.05 0.81 8.10 -51.92 -0.42 0.39 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -30.51 385.63 -10.04 -40.55 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.00 Total: 2.39 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.35 Total: -1.07 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.54 Total: -55.35 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.51 -10.04 -40.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086912936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.638 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds