Wall clock time and date at job start Wed Apr 1 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38605 * 119.55061 * 2 1 4 4 C 1.38580 * 119.34954 * 180.30044 * 3 2 1 5 5 C 1.38627 * 118.49227 * 359.43307 * 4 3 2 6 6 C 1.39268 * 119.06112 * 0.27546 * 5 4 3 7 7 C 1.48163 * 119.72656 * 180.02562 * 6 5 4 8 8 O 1.21520 * 119.99846 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00268 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00115 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.86434 * 26.75708 * 10 9 7 12 12 C 1.54153 * 113.63504 * 255.49274 * 10 9 7 13 13 H 1.08996 * 114.25102 * 26.68232 * 12 10 9 14 14 C 1.53058 * 111.68689 * 156.94712 * 12 10 9 15 15 C 1.53020 * 109.40927 * 146.40567 * 14 12 10 16 16 C 1.52946 * 108.92966 * 295.34605 * 15 14 12 17 17 N 1.45896 * 109.88659 * 57.34960 * 16 15 14 18 18 C 1.36929 * 118.48381 * 140.63838 * 17 16 15 19 19 H 1.08008 * 119.99801 * 146.68401 * 18 17 16 20 20 C 1.38814 * 120.00405 * 326.68689 * 18 17 16 21 21 N 1.31618 * 120.00279 * 154.52518 * 20 18 17 22 22 Si 1.86798 * 119.99565 * 334.52037 * 20 18 17 23 23 H 1.48502 * 109.47024 * 94.91976 * 22 20 18 24 24 H 1.48500 * 109.47151 * 214.91614 * 22 20 18 25 25 H 1.48503 * 109.47491 * 334.91881 * 22 20 18 26 26 C 1.45861 * 123.34288 * 321.05086 * 17 16 15 27 27 H 1.09001 * 113.03739 * 156.55270 * 26 17 16 28 28 C 1.53391 * 114.07759 * 285.92092 * 26 17 16 29 29 C 1.53000 * 113.68774 * 28.27810 * 28 26 17 30 30 C 1.53001 * 113.68483 * 257.14300 * 28 26 17 31 31 N 1.31501 * 119.55206 * 179.72524 * 2 1 3 32 32 H 1.09000 * 109.47127 * 270.27664 * 1 2 3 33 33 H 1.09001 * 109.47641 * 30.28206 * 1 2 3 34 34 H 1.09011 * 109.47316 * 150.28006 * 1 2 3 35 35 H 1.07995 * 120.32174 * 0.02563 * 3 2 1 36 36 H 1.08003 * 120.75176 * 179.70875 * 4 3 2 37 37 H 1.08003 * 120.46970 * 180.25609 * 5 4 3 38 38 H 0.97004 * 119.99884 * 359.97438 * 9 7 6 39 39 H 1.08999 * 109.48208 * 266.37803 * 14 12 10 40 40 H 1.08996 * 109.48453 * 26.41836 * 14 12 10 41 41 H 1.09003 * 109.56776 * 55.18260 * 15 14 12 42 42 H 1.09001 * 109.56747 * 175.40816 * 15 14 12 43 43 H 1.08997 * 109.40046 * 177.47461 * 16 15 14 44 44 H 1.08995 * 109.40475 * 297.30382 * 16 15 14 45 45 H 0.96993 * 120.00008 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47272 * 144.01364 * 29 28 26 47 47 H 1.09000 * 109.47264 * 264.01600 * 29 28 26 48 48 H 1.08998 * 109.47034 * 24.01216 * 29 28 26 49 49 H 1.08990 * 109.47408 * 303.46638 * 30 28 26 50 50 H 1.09001 * 109.46848 * 63.46733 * 30 28 26 51 51 H 1.08997 * 109.47124 * 183.46485 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2009 -0.0063 5 6 4.2333 -0.0197 -0.0004 6 6 3.4821 -1.1924 0.0057 7 6 4.1691 -2.5051 0.0127 8 8 5.3833 -2.5553 0.0125 9 7 3.4476 -3.6434 0.0181 10 6 4.1270 -4.9414 0.0244 11 1 5.1179 -4.8985 0.4764 12 6 4.1002 -5.6595 -1.3393 13 1 4.0189 -4.9906 -2.1961 14 6 5.2405 -6.6725 -1.4676 15 6 4.7711 -7.8630 -2.3066 16 6 3.6502 -8.5861 -1.5583 17 7 2.5590 -7.6580 -1.2815 18 6 1.2717 -8.1086 -1.4027 19 1 0.5013 -7.7240 -0.7508 20 6 0.9569 -9.0599 -2.3634 21 7 -0.0801 -9.8518 -2.1905 22 14 2.0050 -9.2159 -3.9018 23 1 3.0282 -10.2727 -3.6985 24 1 1.1415 -9.5781 -5.0544 25 1 2.6784 -7.9209 -4.1755 26 6 2.7682 -6.2687 -0.8896 27 1 1.9141 -5.6293 -1.1126 28 6 3.2539 -6.0922 0.5547 29 6 4.0589 -7.2816 1.0822 30 6 2.1579 -5.6375 1.5205 31 7 2.1555 -1.1439 0.0055 32 1 -0.3633 0.0050 1.0277 33 1 -0.3634 0.8874 -0.5182 34 1 -0.3634 -0.8926 -0.5095 35 1 1.6484 2.1398 0.0004 36 1 4.1317 2.1271 -0.0112 37 1 5.3126 -0.0608 -0.0009 38 1 2.4784 -3.6033 0.0179 39 1 6.0939 -6.1995 -1.9535 40 1 5.5323 -7.0188 -0.4762 41 1 4.3986 -7.5082 -3.2676 42 1 5.6043 -8.5469 -2.4682 43 1 3.2793 -9.4091 -2.1691 44 1 4.0371 -8.9789 -0.6180 45 1 -0.2998 -10.5166 -2.8616 46 1 4.8545 -6.9213 1.7344 47 1 3.4011 -7.9451 1.6437 48 1 4.4944 -7.8258 0.2442 49 1 1.7175 -4.7084 1.1589 50 1 1.3866 -6.4052 1.5822 51 1 2.5887 -5.4750 2.5084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087271332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:44 Heat of formation + Delta-G solvation = 65.560384 kcal Electronic energy + Delta-G solvation = -31473.417696 eV Core-core repulsion = 27567.869879 eV Total energy + Delta-G solvation = -3905.547817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.18611 -40.53738 -38.64192 -35.60024 -33.50285 -33.26204 -32.91188 -32.28244 -30.92059 -29.99606 -28.04891 -27.03201 -25.91090 -25.22942 -24.13374 -22.47155 -22.43628 -21.38379 -20.60676 -19.49903 -18.18555 -17.52609 -16.91972 -16.72640 -16.18299 -15.81366 -15.45212 -15.31283 -14.94819 -14.48322 -14.19580 -13.98187 -13.89144 -13.60443 -13.39525 -13.34587 -12.91397 -12.61951 -12.61176 -12.52422 -12.31656 -12.22109 -12.10818 -11.90325 -11.75174 -11.57960 -11.35535 -10.92349 -10.68345 -10.51526 -10.37178 -10.30847 -10.23379 -10.07283 -9.86385 -9.68895 -9.52090 -9.45538 -9.27275 -9.16493 -8.67525 -8.37734 -6.75941 -5.99235 -3.34083 0.42310 0.91872 2.65164 3.09661 3.32059 3.49077 3.53541 3.65476 3.84380 4.36542 4.53138 4.56342 4.67675 4.77866 4.83279 4.96534 5.00183 5.12016 5.22510 5.26443 5.29926 5.33175 5.33760 5.40516 5.54865 5.67438 5.70583 5.77230 5.77645 5.81899 5.90372 5.97905 6.01901 6.07795 6.17254 6.22868 6.29897 6.32584 6.39107 6.40524 6.42224 6.53221 6.60372 6.68218 6.73810 6.77841 6.88125 7.02656 7.11884 7.42772 7.72110 8.07072 8.23512 8.39446 9.04725 9.75456 10.10656 11.16065 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003306 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.280734 B = 8468.534726 C = 9190.732593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.154 4.154 4 C -0.079 4.079 5 C -0.121 4.121 6 C 0.089 3.911 7 C 0.569 3.431 8 O -0.537 6.537 9 N -0.684 5.684 10 C 0.124 3.876 11 H 0.097 0.903 12 C -0.134 4.134 13 H 0.072 0.928 14 C -0.103 4.103 15 C -0.146 4.146 16 C 0.132 3.868 17 N -0.582 5.582 18 C -0.272 4.272 19 H 0.081 0.919 20 C 0.034 3.966 21 N -0.897 5.897 22 Si 0.871 3.129 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.265 1.265 26 C 0.188 3.812 27 H 0.082 0.918 28 C -0.111 4.111 29 C -0.137 4.137 30 C -0.128 4.128 31 N -0.458 5.458 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.412 0.588 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.047 0.953 50 H 0.064 0.936 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 20.027 5.717 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.012 4.012 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.049 4.049 7 C 0.354 3.646 8 O -0.414 6.414 9 N -0.334 5.334 10 C 0.018 3.982 11 H 0.115 0.885 12 C -0.155 4.155 13 H 0.090 0.910 14 C -0.140 4.140 15 C -0.184 4.184 16 C 0.008 3.992 17 N -0.302 5.302 18 C -0.401 4.401 19 H 0.099 0.901 20 C -0.167 4.167 21 N -0.538 5.538 22 Si 0.701 3.299 23 H -0.215 1.215 24 H -0.233 1.233 25 H -0.190 1.190 26 C 0.078 3.922 27 H 0.100 0.900 28 C -0.115 4.115 29 C -0.194 4.194 30 C -0.186 4.186 31 N -0.171 5.171 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.251 0.749 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.109 0.891 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.498 19.009 5.653 20.869 hybrid contribution 0.472 0.817 -1.037 1.402 sum 6.970 19.826 4.616 21.517 Atomic orbital electron populations 1.20766 0.88168 1.03987 1.03442 1.21359 0.97285 0.87865 0.94707 1.22189 0.95036 0.99450 1.00694 1.21613 0.94434 0.98277 0.96176 1.22114 1.02327 0.91802 0.97940 1.21203 0.89621 0.94281 0.99841 1.17862 0.86526 0.83275 0.76942 1.90769 1.12987 1.87033 1.50626 1.45661 1.11093 1.04647 1.71962 1.22348 0.96737 0.81090 0.97987 0.88481 1.23271 0.98377 0.97344 0.96530 0.90988 1.21471 0.96141 0.95357 1.01054 1.22016 0.98955 0.97510 0.99952 1.21136 0.88174 0.92635 0.97252 1.43663 1.02741 1.04675 1.79093 1.18884 0.85638 1.21844 1.13698 0.90138 1.25408 0.95967 0.97482 0.97804 1.69910 1.29777 1.19477 1.34667 0.87123 0.79480 0.78381 0.84867 1.21450 1.23329 1.18962 1.21542 0.93846 0.86154 0.90638 0.90031 1.22933 0.95758 0.93896 0.98944 1.22035 0.98744 0.96945 1.01629 1.21603 0.98401 1.00630 0.97929 1.67418 1.08587 1.30188 1.10885 0.90094 0.90529 0.89875 0.84313 0.84080 0.83448 0.74939 0.92806 0.90304 0.91747 0.92200 0.92080 0.94624 0.92807 0.94126 0.92255 0.89095 0.93403 0.91650 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.16 36.00 0.37 -0.39 16 2 C 0.13 1.25 6.78 -82.60 -0.56 0.69 16 3 C -0.15 -1.18 9.75 -39.32 -0.38 -1.56 16 4 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 5 C -0.12 -1.30 9.63 -39.06 -0.38 -1.68 16 6 C 0.09 1.17 6.75 -83.01 -0.56 0.61 16 7 C 0.57 8.76 7.81 -12.18 -0.10 8.66 16 8 O -0.54 -9.47 15.96 5.35 0.09 -9.39 16 9 N -0.68 -10.26 4.76 -53.63 -0.26 -10.52 16 10 C 0.12 1.97 3.29 -66.88 -0.22 1.75 16 11 H 0.10 1.60 7.42 -51.93 -0.39 1.21 16 12 C -0.13 -2.33 4.08 -89.88 -0.37 -2.70 16 13 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 14 C -0.10 -1.68 5.17 -26.69 -0.14 -1.82 16 15 C -0.15 -2.67 5.68 -26.75 -0.15 -2.82 16 16 C 0.13 2.82 4.46 -4.40 -0.02 2.80 16 17 N -0.58 -13.24 2.30 -166.30 -0.38 -13.62 16 18 C -0.27 -7.35 9.78 -15.06 -0.15 -7.50 16 19 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 20 C 0.03 0.95 5.17 -17.43 -0.09 0.86 16 21 N -0.90 -26.99 13.97 55.49 0.78 -26.22 16 22 Si 0.87 21.94 24.41 -169.99 -4.15 17.79 16 23 H -0.29 -7.00 6.61 56.52 0.37 -6.63 16 24 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 25 H -0.26 -6.54 5.89 56.52 0.33 -6.20 16 26 C 0.19 3.63 3.45 -67.97 -0.23 3.40 16 27 H 0.08 1.65 7.93 -51.93 -0.41 1.23 16 28 C -0.11 -1.85 1.34 -153.85 -0.21 -2.06 16 29 C -0.14 -2.22 7.40 37.16 0.27 -1.95 16 30 C -0.13 -1.99 8.88 37.16 0.33 -1.66 16 31 N -0.46 -5.71 9.45 -6.06 -0.06 -5.76 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.15 1.51 7.64 -52.48 -0.40 1.11 16 38 H 0.41 5.95 6.06 -40.82 -0.25 5.70 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.22 4.79 -51.93 -0.25 0.97 16 41 H 0.06 1.29 6.41 -51.93 -0.33 0.96 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.45 3.27 -51.93 -0.17 1.28 16 44 H 0.04 0.72 5.82 -51.93 -0.30 0.42 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.01 8.03 -51.93 -0.42 0.60 16 48 H 0.09 1.54 1.89 -51.93 -0.10 1.44 16 49 H 0.05 0.69 5.96 -51.93 -0.31 0.38 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -31.84 381.12 -8.84 -40.68 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.62 Total: 7.69 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.98 Total: -6.40 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.08 Total: -56.12 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.84 -8.84 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.241 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds