Wall clock time and date at job start Wed Apr 1 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38605 * 119.55061 * 2 1 4 4 C 1.38580 * 119.34954 * 180.30044 * 3 2 1 5 5 C 1.38627 * 118.49227 * 359.43307 * 4 3 2 6 6 C 1.39268 * 119.06112 * 0.27546 * 5 4 3 7 7 C 1.48163 * 119.72656 * 180.02562 * 6 5 4 8 8 O 1.21520 * 119.99846 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00268 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00115 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.86434 * 26.75708 * 10 9 7 12 12 C 1.54153 * 113.63504 * 255.49274 * 10 9 7 13 13 H 1.08996 * 114.25102 * 26.68232 * 12 10 9 14 14 C 1.53058 * 111.68689 * 156.94712 * 12 10 9 15 15 C 1.53020 * 109.40927 * 146.40567 * 14 12 10 16 16 C 1.52946 * 108.92966 * 295.34605 * 15 14 12 17 17 N 1.45896 * 109.88659 * 57.34960 * 16 15 14 18 18 C 1.36929 * 118.48381 * 140.63838 * 17 16 15 19 19 H 1.08008 * 119.99801 * 146.68401 * 18 17 16 20 20 C 1.38814 * 120.00405 * 326.68689 * 18 17 16 21 21 N 1.31618 * 120.00279 * 154.52518 * 20 18 17 22 22 Si 1.86798 * 119.99565 * 334.52037 * 20 18 17 23 23 H 1.48502 * 109.47024 * 94.91976 * 22 20 18 24 24 H 1.48500 * 109.47151 * 214.91614 * 22 20 18 25 25 H 1.48503 * 109.47491 * 334.91881 * 22 20 18 26 26 C 1.45861 * 123.34288 * 321.05086 * 17 16 15 27 27 H 1.09001 * 113.03739 * 156.55270 * 26 17 16 28 28 C 1.53391 * 114.07759 * 285.92092 * 26 17 16 29 29 C 1.53000 * 113.68774 * 28.27810 * 28 26 17 30 30 C 1.53001 * 113.68483 * 257.14300 * 28 26 17 31 31 N 1.31501 * 119.55206 * 179.72524 * 2 1 3 32 32 H 1.09000 * 109.47127 * 270.27664 * 1 2 3 33 33 H 1.09001 * 109.47641 * 30.28206 * 1 2 3 34 34 H 1.09011 * 109.47316 * 150.28006 * 1 2 3 35 35 H 1.07995 * 120.32174 * 0.02563 * 3 2 1 36 36 H 1.08003 * 120.75176 * 179.70875 * 4 3 2 37 37 H 1.08003 * 120.46970 * 180.25609 * 5 4 3 38 38 H 0.97004 * 119.99884 * 359.97438 * 9 7 6 39 39 H 1.08999 * 109.48208 * 266.37803 * 14 12 10 40 40 H 1.08996 * 109.48453 * 26.41836 * 14 12 10 41 41 H 1.09003 * 109.56776 * 55.18260 * 15 14 12 42 42 H 1.09001 * 109.56747 * 175.40816 * 15 14 12 43 43 H 1.08997 * 109.40046 * 177.47461 * 16 15 14 44 44 H 1.08995 * 109.40475 * 297.30382 * 16 15 14 45 45 H 0.96993 * 120.00008 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47272 * 144.01364 * 29 28 26 47 47 H 1.09000 * 109.47264 * 264.01600 * 29 28 26 48 48 H 1.08998 * 109.47034 * 24.01216 * 29 28 26 49 49 H 1.08990 * 109.47408 * 303.46638 * 30 28 26 50 50 H 1.09001 * 109.46848 * 63.46733 * 30 28 26 51 51 H 1.08997 * 109.47124 * 183.46485 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2009 -0.0063 5 6 4.2333 -0.0197 -0.0004 6 6 3.4821 -1.1924 0.0057 7 6 4.1691 -2.5051 0.0127 8 8 5.3833 -2.5553 0.0125 9 7 3.4476 -3.6434 0.0181 10 6 4.1270 -4.9414 0.0244 11 1 5.1179 -4.8985 0.4764 12 6 4.1002 -5.6595 -1.3393 13 1 4.0189 -4.9906 -2.1961 14 6 5.2405 -6.6725 -1.4676 15 6 4.7711 -7.8630 -2.3066 16 6 3.6502 -8.5861 -1.5583 17 7 2.5590 -7.6580 -1.2815 18 6 1.2717 -8.1086 -1.4027 19 1 0.5013 -7.7240 -0.7508 20 6 0.9569 -9.0599 -2.3634 21 7 -0.0801 -9.8518 -2.1905 22 14 2.0050 -9.2159 -3.9018 23 1 3.0282 -10.2727 -3.6985 24 1 1.1415 -9.5781 -5.0544 25 1 2.6784 -7.9209 -4.1755 26 6 2.7682 -6.2687 -0.8896 27 1 1.9141 -5.6293 -1.1126 28 6 3.2539 -6.0922 0.5547 29 6 4.0589 -7.2816 1.0822 30 6 2.1579 -5.6375 1.5205 31 7 2.1555 -1.1439 0.0055 32 1 -0.3633 0.0050 1.0277 33 1 -0.3634 0.8874 -0.5182 34 1 -0.3634 -0.8926 -0.5095 35 1 1.6484 2.1398 0.0004 36 1 4.1317 2.1271 -0.0112 37 1 5.3126 -0.0608 -0.0009 38 1 2.4784 -3.6033 0.0179 39 1 6.0939 -6.1995 -1.9535 40 1 5.5323 -7.0188 -0.4762 41 1 4.3986 -7.5082 -3.2676 42 1 5.6043 -8.5469 -2.4682 43 1 3.2793 -9.4091 -2.1691 44 1 4.0371 -8.9789 -0.6180 45 1 -0.2998 -10.5166 -2.8616 46 1 4.8545 -6.9213 1.7344 47 1 3.4011 -7.9451 1.6437 48 1 4.4944 -7.8258 0.2442 49 1 1.7175 -4.7084 1.1589 50 1 1.3866 -6.4052 1.5822 51 1 2.5887 -5.4750 2.5084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087271332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:43 Heat of formation + Delta-G solvation = 45.557196 kcal Electronic energy + Delta-G solvation = -31474.285099 eV Core-core repulsion = 27567.869879 eV Total energy + Delta-G solvation = -3906.415220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51396 -41.46570 -39.79820 -37.19332 -34.95695 -34.32792 -33.97810 -33.25745 -32.80740 -31.44217 -28.74333 -28.36112 -27.23534 -26.92555 -25.28363 -24.06933 -23.29646 -22.76999 -21.72759 -20.91138 -19.40278 -19.02383 -18.68423 -17.67718 -17.44098 -17.01144 -16.68390 -16.41720 -16.15645 -15.72175 -15.63084 -15.39247 -15.04199 -14.92384 -14.74199 -14.51746 -14.21915 -14.01642 -13.82115 -13.76574 -13.49319 -13.27191 -13.23426 -13.10062 -13.04440 -12.92802 -12.87890 -12.47064 -12.30249 -12.10973 -12.00386 -11.78081 -11.50357 -11.45222 -11.18334 -11.10516 -10.94054 -10.70968 -10.55007 -10.44028 -10.09883 -9.85753 -8.63816 -8.18501 -5.48401 -0.38319 0.22759 1.28941 1.41116 1.51322 1.64506 1.99048 2.42177 2.80584 3.00615 3.04674 3.35559 3.47885 3.58937 3.69904 3.85382 3.88521 3.89483 4.02211 4.09075 4.12340 4.30847 4.36685 4.39310 4.44288 4.59550 4.59919 4.61242 4.72830 4.75935 4.76451 4.81990 4.83808 4.89630 4.94936 5.00979 5.03876 5.10881 5.12030 5.15415 5.16895 5.21454 5.21600 5.33396 5.34739 5.47527 5.59800 5.65543 5.68792 5.97019 6.20618 6.37202 6.79376 7.04619 7.07901 7.72582 8.06418 9.01029 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003306 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.280734 B = 8468.534726 C = 9190.732593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 C -0.138 4.138 4 C -0.073 4.073 5 C -0.128 4.128 6 C 0.057 3.943 7 C 0.568 3.432 8 O -0.565 6.565 9 N -0.684 5.684 10 C 0.140 3.860 11 H 0.102 0.898 12 C -0.130 4.130 13 H 0.062 0.938 14 C -0.098 4.098 15 C -0.140 4.140 16 C 0.126 3.874 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.046 0.954 20 C -0.021 4.021 21 N -0.946 5.946 22 Si 0.933 3.067 23 H -0.272 1.272 24 H -0.317 1.317 25 H -0.258 1.258 26 C 0.172 3.828 27 H 0.064 0.936 28 C -0.103 4.103 29 C -0.135 4.135 30 C -0.123 4.123 31 N -0.485 5.485 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.147 0.853 38 H 0.413 0.587 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 23.028 6.062 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.098 4.098 5 C -0.149 4.149 6 C -0.080 4.080 7 C 0.355 3.645 8 O -0.444 6.444 9 N -0.334 5.334 10 C 0.034 3.966 11 H 0.120 0.880 12 C -0.151 4.151 13 H 0.080 0.920 14 C -0.136 4.136 15 C -0.178 4.178 16 C 0.002 3.998 17 N -0.311 5.311 18 C -0.386 4.386 19 H 0.063 0.937 20 C -0.217 4.217 21 N -0.591 5.591 22 Si 0.763 3.237 23 H -0.199 1.199 24 H -0.246 1.246 25 H -0.182 1.182 26 C 0.064 3.936 27 H 0.082 0.918 28 C -0.107 4.107 29 C -0.192 4.192 30 C -0.181 4.181 31 N -0.198 5.198 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.196 0.804 36 H 0.197 0.803 37 H 0.165 0.835 38 H 0.252 0.748 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.624 22.042 6.011 24.420 hybrid contribution -0.271 0.038 -1.049 1.084 sum 8.353 22.080 4.962 24.122 Atomic orbital electron populations 1.20844 0.86613 1.04514 1.04194 1.21917 0.98488 0.88053 0.94543 1.22645 0.95123 1.00122 0.97842 1.22053 0.94833 0.98452 0.94451 1.22266 1.02402 0.92284 0.97914 1.20954 0.90285 0.93679 1.03097 1.18272 0.86316 0.84084 0.75849 1.90732 1.14066 1.87603 1.52014 1.45652 1.11127 1.04503 1.72070 1.22119 0.96649 0.81213 0.96605 0.88020 1.23248 0.97377 0.97498 0.97002 0.91959 1.21488 0.96013 0.94270 1.01802 1.21972 0.98626 0.98507 0.98736 1.21240 0.88498 0.92062 0.97983 1.43718 1.01534 1.06319 1.79554 1.18790 0.86994 1.20626 1.12142 0.93655 1.25943 0.97521 0.97847 1.00372 1.70025 1.32382 1.21005 1.35649 0.86113 0.78001 0.78881 0.80720 1.19940 1.24590 1.18246 1.21698 0.94610 0.84308 0.93006 0.91845 1.22806 0.96041 0.94620 0.97186 1.22010 0.99080 0.96344 1.01731 1.21548 0.97627 1.00169 0.98747 1.67335 1.08450 1.32059 1.11956 0.89187 0.87776 0.91555 0.80363 0.80339 0.83523 0.74809 0.90726 0.88822 0.93539 0.89130 0.94569 0.93168 0.93034 0.91465 0.93553 0.89515 0.92728 0.93834 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.16 71.23 0.72 -0.56 16 2 C 0.11 1.95 6.78 42.69 0.29 2.24 16 3 C -0.14 -1.61 9.75 22.44 0.22 -1.39 16 4 C -0.07 -0.91 10.17 22.44 0.23 -0.68 16 5 C -0.13 -2.56 9.63 22.61 0.22 -2.35 16 6 C 0.06 1.47 6.75 41.89 0.28 1.75 16 7 C 0.57 17.42 7.81 86.88 0.68 18.10 16 8 O -0.57 -19.71 15.96 -3.78 -0.06 -19.77 16 9 N -0.68 -20.48 4.76 -441.87 -2.10 -22.58 16 10 C 0.14 4.32 3.29 45.67 0.15 4.47 16 11 H 0.10 3.14 7.42 -2.39 -0.02 3.12 16 12 C -0.13 -4.41 4.08 -10.31 -0.04 -4.45 16 13 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 15 C -0.14 -4.81 5.68 30.58 0.17 -4.63 16 16 C 0.13 5.25 4.46 86.48 0.39 5.63 16 17 N -0.59 -27.20 2.30 -680.05 -1.57 -28.76 16 18 C -0.26 -14.36 9.78 84.04 0.82 -13.53 16 19 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 20 C -0.02 -1.21 5.17 84.86 0.44 -0.77 16 21 N -0.95 -59.28 13.97 21.65 0.30 -58.97 16 22 Si 0.93 46.59 24.41 68.60 1.67 48.26 16 23 H -0.27 -12.84 6.61 99.48 0.66 -12.19 16 24 H -0.32 -16.26 7.11 99.48 0.71 -15.56 16 25 H -0.26 -12.43 5.89 99.48 0.59 -11.85 16 26 C 0.17 6.72 3.45 45.31 0.16 6.88 16 27 H 0.06 2.68 7.93 -2.39 -0.02 2.66 16 28 C -0.10 -3.37 1.34 -51.76 -0.07 -3.44 16 29 C -0.13 -4.18 7.40 71.98 0.53 -3.64 16 30 C -0.12 -3.85 8.88 71.98 0.64 -3.21 16 31 N -0.48 -11.86 9.45 -173.09 -1.64 -13.49 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.15 2.86 7.64 -2.91 -0.02 2.84 16 38 H 0.41 12.18 6.06 -92.71 -0.56 11.62 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.09 2.58 4.79 -2.39 -0.01 2.57 16 41 H 0.05 1.77 6.41 -2.39 -0.02 1.75 16 42 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 44 H 0.05 1.96 5.82 -2.39 -0.01 1.95 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.55 8.03 -2.39 -0.02 1.53 16 48 H 0.09 2.76 1.89 -2.39 0.00 2.76 16 49 H 0.05 1.60 5.96 -2.39 -0.01 1.59 16 50 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 51 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -72.74 381.12 2.82 -69.91 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.23 Total: 27.78 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.99 Total: -2.38 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.00 Total: -123.81 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.26 kcal Total: -72.74 2.82 -69.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.469 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds