Wall clock time and date at job start Wed Apr 1 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38358 * 119.45983 * 2 1 4 4 C 1.38356 * 119.30152 * 179.97438 * 3 2 1 5 5 C 1.40026 * 118.28954 * 0.02562 * 4 3 2 6 6 C 1.47838 * 120.55713 * 179.97438 * 5 4 3 7 7 O 1.21558 * 120.00162 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99547 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99460 * 180.02562 * 8 6 5 10 10 H 1.08997 * 113.34906 * 28.42145 * 9 8 6 11 11 C 1.50008 * 114.12483 * 255.49513 * 9 8 6 12 12 H 1.08999 * 112.50267 * 170.16414 * 11 9 8 13 13 C 1.51206 * 126.17538 * 27.77097 * 11 9 8 14 14 C 1.54088 * 106.19128 * 198.57207 * 13 11 9 15 15 C 1.52492 * 112.67683 * 55.43639 * 14 13 11 16 16 N 1.49341 * 111.80811 * 312.94845 * 15 14 13 17 17 C 1.36933 * 123.72566 * 231.85336 * 16 15 14 18 18 H 1.07999 * 120.00601 * 208.87321 * 17 16 15 19 19 C 1.38811 * 119.99976 * 28.86730 * 17 16 15 20 20 N 1.31624 * 120.00040 * 17.28354 * 19 17 16 21 21 Si 1.86805 * 120.00018 * 197.28212 * 19 17 16 22 22 H 1.48501 * 109.47026 * 90.00371 * 21 19 17 23 23 H 1.48504 * 109.46666 * 209.99885 * 21 19 17 24 24 H 1.48497 * 109.46935 * 329.99757 * 21 19 17 25 25 C 1.45389 * 113.11098 * 52.24653 * 16 15 14 26 26 H 1.09003 * 112.09228 * 59.33309 * 25 16 15 27 27 C 1.49964 * 126.21893 * 203.75939 * 25 16 15 28 28 C 1.52992 * 114.08587 * 253.22687 * 27 25 16 29 29 C 1.53000 * 114.08364 * 25.65166 * 27 25 16 30 30 C 1.39519 * 118.87798 * 0.26979 * 5 4 3 31 31 N 1.31693 * 120.57073 * 359.45280 * 30 5 4 32 32 H 1.08997 * 109.47209 * 89.99171 * 1 2 3 33 33 H 1.08997 * 109.47257 * 209.99949 * 1 2 3 34 34 H 1.09005 * 109.46765 * 329.99532 * 1 2 3 35 35 H 1.07999 * 120.34810 * 0.02974 * 3 2 1 36 36 H 1.07998 * 120.85147 * 180.02562 * 4 3 2 37 37 H 0.96994 * 120.00282 * 0.02562 * 8 6 5 38 38 H 1.09009 * 110.09796 * 317.73603 * 13 11 9 39 39 H 1.08997 * 110.10154 * 79.28347 * 13 11 9 40 40 H 1.09004 * 108.83803 * 176.26144 * 14 13 11 41 41 H 1.08995 * 108.84173 * 294.60830 * 14 13 11 42 42 H 1.09004 * 108.99982 * 73.82803 * 15 14 13 43 43 H 1.08998 * 109.00457 * 192.68019 * 15 14 13 44 44 H 0.96994 * 120.00077 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.47216 * 60.00033 * 28 27 25 46 46 H 1.09005 * 109.47397 * 180.02562 * 28 27 25 47 47 H 1.09001 * 109.47585 * 300.00121 * 28 27 25 48 48 H 1.09003 * 109.47362 * 54.26821 * 29 27 25 49 49 H 1.09001 * 109.47288 * 174.27147 * 29 27 25 50 50 H 1.09001 * 109.47350 * 294.26989 * 29 27 25 51 51 H 1.08008 * 119.70898 * 179.72473 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7083 -0.0966 0.0005 7 8 6.3601 0.9295 0.0010 8 7 6.3321 -1.2913 0.0010 9 6 7.7958 -1.3533 0.0016 10 1 8.2644 -0.4922 0.4778 11 6 8.3943 -1.7221 -1.3235 12 1 9.4767 -1.5951 -1.3422 13 6 7.7845 -1.4604 -2.6822 14 6 8.5000 -2.4081 -3.6641 15 6 8.4159 -3.8697 -3.2372 16 7 8.7493 -4.0457 -1.7922 17 6 9.6772 -4.9401 -1.3295 18 1 9.5710 -5.3669 -0.3431 19 6 10.7544 -5.2983 -2.1283 20 7 11.0822 -4.5545 -3.1635 21 14 11.7389 -6.8362 -1.7341 22 1 11.1458 -7.9988 -2.4426 23 1 13.1443 -6.6511 -2.1766 24 1 11.7092 -7.0811 -0.2697 25 6 7.9799 -3.1744 -0.9188 26 1 6.9071 -3.3413 -1.0150 27 6 8.3747 -2.7261 0.4567 28 6 7.5836 -3.3949 1.5825 29 6 9.8851 -2.7167 0.7009 30 6 3.4715 -1.2042 -0.0058 31 7 2.1558 -1.1486 -0.0008 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6443 2.1382 0.0005 36 1 4.1274 2.1265 0.0010 37 1 5.8120 -2.1100 0.0010 38 1 6.7167 -1.6785 -2.6618 39 1 7.9490 -0.4229 -2.9730 40 1 8.0459 -2.3024 -4.6494 41 1 9.5492 -2.1204 -3.7297 42 1 7.4053 -4.2351 -3.4199 43 1 9.1174 -4.4542 -3.8324 44 1 11.8347 -4.8050 -3.7219 45 1 7.7341 -4.4738 1.5412 46 1 7.9292 -3.0161 2.5443 47 1 6.5233 -3.1713 1.4641 48 1 10.3740 -2.1203 -0.0695 49 1 10.0921 -2.2854 1.6803 50 1 10.2652 -3.7376 0.6658 51 1 3.9669 -2.1640 -0.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087272855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:57 Heat of formation + Delta-G solvation = 69.786324 kcal Electronic energy + Delta-G solvation = -31451.738316 eV Core-core repulsion = 27546.373750 eV Total energy + Delta-G solvation = -3905.364566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.30657 -40.49098 -38.54544 -35.23292 -33.72540 -33.08092 -32.79052 -32.44443 -30.24368 -29.35698 -28.31105 -26.90461 -25.80191 -24.69158 -24.04672 -22.94325 -22.33095 -20.89576 -20.47753 -19.10326 -18.44883 -17.74501 -16.93664 -16.60566 -15.98906 -15.36904 -15.17636 -14.92788 -14.71491 -14.44124 -14.05282 -13.81770 -13.73029 -13.66326 -13.41308 -13.23907 -12.74103 -12.66987 -12.60214 -12.53077 -12.40533 -12.34840 -11.97507 -11.54258 -11.29513 -11.14532 -10.98666 -10.90113 -10.67024 -10.44611 -10.30278 -10.22678 -10.16482 -10.08276 -9.86351 -9.60185 -9.50023 -9.28608 -9.24129 -8.89661 -8.65420 -8.40618 -6.55462 -5.76846 -3.18403 0.41224 0.95345 2.78889 3.12527 3.36828 3.44370 3.45310 3.63529 3.88465 4.37571 4.47760 4.57244 4.59641 4.74831 4.75981 4.99356 5.01927 5.19762 5.23141 5.23961 5.29512 5.32684 5.46447 5.59151 5.63701 5.76449 5.81651 5.86642 5.90097 5.94528 6.02301 6.10874 6.12327 6.29082 6.35155 6.35707 6.40023 6.50646 6.55010 6.62525 6.67334 6.74916 6.81717 6.96636 7.05699 7.10183 7.27723 7.47517 7.56316 7.60854 7.68774 7.77736 8.24006 8.43244 9.14123 9.81875 10.49581 11.30670 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002902 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.399013 B = 9645.749605 C = 9715.868271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 C -0.181 4.181 4 C -0.014 4.014 5 C -0.188 4.188 6 C 0.564 3.436 7 O -0.536 6.536 8 N -0.694 5.694 9 C 0.136 3.864 10 H 0.095 0.905 11 C -0.166 4.166 12 H 0.107 0.893 13 C -0.085 4.085 14 C -0.121 4.121 15 C 0.155 3.845 16 N -0.571 5.571 17 C -0.233 4.233 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.145 3.855 26 H 0.045 0.955 27 C -0.063 4.063 28 C -0.134 4.134 29 C -0.117 4.117 30 C 0.141 3.859 31 N -0.487 5.487 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.398 0.602 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.066 0.934 42 H -0.004 1.004 43 H 0.098 0.902 44 H 0.252 0.748 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.037 0.963 50 H 0.084 0.916 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 9.252 6.639 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.007 3.993 3 C -0.200 4.200 4 C -0.041 4.041 5 C -0.193 4.193 6 C 0.350 3.650 7 O -0.414 6.414 8 N -0.345 5.345 9 C 0.031 3.969 10 H 0.113 0.887 11 C -0.187 4.187 12 H 0.124 0.876 13 C -0.122 4.122 14 C -0.160 4.160 15 C 0.030 3.970 16 N -0.293 5.293 17 C -0.362 4.362 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.540 5.540 21 Si 0.726 3.274 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.036 3.964 26 H 0.062 0.938 27 C -0.064 4.064 28 C -0.192 4.192 29 C -0.174 4.174 30 C -0.018 4.018 31 N -0.196 5.196 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.235 0.765 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.102 0.898 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.545 9.111 6.525 19.983 hybrid contribution 0.852 -0.418 -0.058 0.951 sum -15.693 8.693 6.467 19.070 Atomic orbital electron populations 1.20783 0.88487 1.03753 1.03432 1.21550 0.97339 0.88359 0.92012 1.21966 0.94508 0.99539 1.04033 1.21736 0.93987 0.98042 0.90302 1.21055 0.94733 0.95530 1.07993 1.17940 0.86442 0.83950 0.76654 1.90769 1.66787 1.33847 1.49957 1.45622 1.07468 1.07661 1.73776 1.21622 0.78385 0.98416 0.98459 0.88701 1.23325 1.01258 1.01554 0.92588 0.87555 1.21037 0.98116 0.97929 0.95160 1.21787 1.00712 0.97511 0.95981 1.21058 0.96450 0.93622 0.85849 1.44040 1.42437 1.42677 1.00131 1.18935 1.00140 1.15908 1.01239 0.91571 1.24958 0.96616 0.98924 0.99216 1.69942 1.28303 1.36649 1.19129 0.86395 0.79295 0.83811 0.77901 1.21693 1.21927 1.20542 1.21774 0.93699 0.89703 0.91186 0.93824 1.21859 0.97034 0.93047 0.94507 1.21694 0.98588 1.01109 0.97798 1.21609 0.91712 1.04500 0.99549 1.22979 0.89382 0.97592 0.91851 1.67545 1.09528 1.29128 1.13426 0.89978 0.90154 0.90455 0.84110 0.83450 0.76469 0.93830 0.94122 0.94217 0.91520 0.98590 0.88447 0.93807 0.91953 0.92979 0.93591 0.91659 0.94417 0.89756 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 2 C 0.14 1.37 6.78 -82.51 -0.56 0.81 16 3 C -0.18 -1.57 9.72 -39.49 -0.38 -1.95 16 4 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 5 C -0.19 -2.30 5.89 -104.82 -0.62 -2.91 16 6 C 0.56 8.28 7.78 -12.33 -0.10 8.19 16 7 O -0.54 -9.59 16.10 5.31 0.09 -9.50 16 8 N -0.69 -9.73 4.21 -58.61 -0.25 -9.97 16 9 C 0.14 2.21 3.90 -71.83 -0.28 1.93 16 10 H 0.10 1.63 7.61 -51.93 -0.39 1.23 16 11 C -0.17 -3.10 2.98 -95.81 -0.29 -3.39 16 12 H 0.11 2.28 5.88 -51.93 -0.31 1.97 16 13 C -0.08 -1.58 5.94 -27.07 -0.16 -1.74 16 14 C -0.12 -2.49 5.90 -26.42 -0.16 -2.64 16 15 C 0.15 3.54 5.82 -2.72 -0.02 3.52 16 16 N -0.57 -13.19 2.92 -168.62 -0.49 -13.68 16 17 C -0.23 -5.86 7.75 -15.06 -0.12 -5.98 16 18 H 0.07 1.66 7.22 -52.49 -0.38 1.28 16 19 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 20 N -0.90 -24.50 11.18 55.49 0.62 -23.88 16 21 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.14 2.76 2.92 -72.13 -0.21 2.55 16 26 H 0.04 0.81 6.60 -51.93 -0.34 0.47 16 27 C -0.06 -1.05 1.38 -159.14 -0.22 -1.27 16 28 C -0.13 -1.91 9.22 37.15 0.34 -1.57 16 29 C -0.12 -2.08 8.40 37.16 0.31 -1.77 16 30 C 0.14 1.59 10.71 -17.13 -0.18 1.41 16 31 N -0.49 -5.58 10.25 -9.14 -0.09 -5.67 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.15 1.50 7.74 -52.49 -0.41 1.10 16 37 H 0.40 4.88 4.29 -40.82 -0.18 4.71 16 38 H 0.04 0.78 7.97 -51.92 -0.41 0.36 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 43 H 0.10 2.52 5.70 -51.93 -0.30 2.23 16 44 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.57 6.32 -51.93 -0.33 0.24 16 48 H 0.06 1.28 5.92 -51.93 -0.31 0.97 16 49 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.08 1.69 6.04 -51.93 -0.31 1.38 16 51 H 0.16 1.51 6.42 -52.48 -0.34 1.17 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -29.82 391.06 -9.78 -39.60 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.78 Total: 6.99 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.73 Total: -5.70 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.21 Total: -53.20 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.82 -9.78 -39.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.382 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds