Wall clock time and date at job start Wed Apr 1 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38345 * 120.34885 * 2 1 4 4 N 1.31933 * 121.07892 * 180.27112 * 3 2 1 5 5 C 1.31694 * 121.87974 * 359.97438 * 4 3 2 6 6 C 1.39518 * 120.56472 * 359.97438 * 5 4 3 7 7 C 1.47840 * 120.55528 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00030 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00321 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00279 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.86714 * 26.76316 * 10 9 7 12 12 C 1.54155 * 113.63910 * 255.49553 * 10 9 7 13 13 H 1.09010 * 114.24463 * 26.68391 * 12 10 9 14 14 C 1.53063 * 111.69325 * 157.46299 * 12 10 9 15 15 C 1.51267 * 110.34264 * 145.16320 * 14 12 10 16 16 C 1.52936 * 109.36317 * 296.36008 * 15 14 12 17 17 N 1.45890 * 109.89134 * 56.84481 * 16 15 14 18 18 C 1.36935 * 118.48709 * 140.64127 * 17 16 15 19 19 H 1.07999 * 120.00207 * 206.36506 * 18 17 16 20 20 C 1.38816 * 119.99881 * 26.36063 * 18 17 16 21 21 N 1.31617 * 119.99837 * 14.00551 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 194.00900 * 20 18 17 23 23 H 1.48492 * 109.47371 * 89.99840 * 22 20 18 24 24 H 1.48498 * 109.46955 * 210.00215 * 22 20 18 25 25 H 1.48502 * 109.47069 * 329.99634 * 22 20 18 26 26 C 1.45092 * 123.02840 * 320.66229 * 17 16 15 27 27 H 1.09003 * 112.25710 * 157.09428 * 26 17 16 28 28 C 1.53394 * 113.74553 * 286.73189 * 26 17 16 29 29 C 1.53000 * 113.68457 * 28.73228 * 28 26 17 30 30 C 1.52999 * 113.68513 * 257.59949 * 28 26 17 31 31 C 1.38360 * 120.34716 * 180.27313 * 2 1 3 32 32 H 1.08996 * 109.47160 * 269.72468 * 1 2 3 33 33 H 1.09000 * 109.46751 * 29.72910 * 1 2 3 34 34 H 1.09004 * 109.46517 * 149.72217 * 1 2 3 35 35 H 1.08005 * 119.46084 * 0.24702 * 3 2 1 36 36 H 1.07992 * 119.71435 * 180.02562 * 5 4 3 37 37 H 0.97001 * 119.99877 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47854 * 266.38668 * 14 12 10 39 39 H 1.09000 * 109.47998 * 26.41826 * 14 12 10 40 40 H 1.09002 * 109.75596 * 176.13905 * 15 14 12 41 41 H 1.09005 * 109.02946 * 56.13422 * 15 14 12 42 42 H 1.09010 * 109.40077 * 296.71659 * 16 15 14 43 43 H 1.08997 * 109.40685 * 176.97408 * 16 15 14 44 44 H 0.97006 * 119.99639 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46639 * 145.78419 * 29 28 26 46 46 H 1.08993 * 109.46967 * 265.78483 * 29 28 26 47 47 H 1.09004 * 109.47044 * 25.78674 * 29 28 26 48 48 H 1.08996 * 109.47291 * 303.46574 * 30 28 26 49 49 H 1.09006 * 109.47499 * 63.46599 * 30 28 26 50 50 H 1.08998 * 109.46869 * 183.46680 * 30 28 26 51 51 H 1.08002 * 120.85502 * 359.70103 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2107 -0.0053 5 6 4.2350 0.1014 -0.0104 6 6 3.6054 -1.1437 -0.0097 7 6 4.4023 -2.3889 -0.0160 8 8 3.8433 -3.4683 -0.0158 9 7 5.7486 -2.3274 -0.0218 10 6 6.5383 -3.5612 -0.0286 11 1 6.0093 -4.4002 -0.4807 12 6 7.1755 -3.8948 1.3349 13 1 6.6352 -3.4924 2.1919 14 6 7.5008 -5.3854 1.4579 15 6 8.7679 -5.5826 2.2602 16 6 9.9442 -4.9518 1.5135 17 7 9.6737 -3.5402 1.2634 18 6 10.7022 -2.6453 1.3922 19 1 10.4936 -1.6144 1.6374 20 6 12.0130 -3.0632 1.2075 21 7 12.2595 -4.2280 0.6464 22 14 13.4271 -1.9725 1.7555 23 1 13.7846 -2.2940 3.1604 24 1 14.6025 -2.2084 0.8792 25 1 13.0182 -0.5479 1.6623 26 6 8.3651 -3.0406 0.8850 27 1 8.2416 -1.9842 1.1237 28 6 7.9705 -3.3744 -0.5592 29 6 8.6036 -4.6634 -1.0871 30 6 8.1194 -2.1970 -1.5248 31 6 2.2061 -1.1940 -0.0057 32 1 -0.3633 -0.0049 1.0276 33 1 -0.3633 0.8924 -0.5096 34 1 -0.3632 -0.8875 -0.5182 35 1 1.6629 2.1274 0.0041 36 1 5.3135 0.1559 -0.0143 37 1 6.1948 -1.4660 -0.0224 38 1 6.6699 -5.9001 1.9403 39 1 7.6617 -5.8055 0.4651 40 1 8.9534 -6.6476 2.4001 41 1 8.6521 -5.1017 3.2315 42 1 10.0882 -5.4667 0.5636 43 1 10.8479 -5.0461 2.1156 44 1 13.1755 -4.5202 0.5177 45 1 7.9077 -5.1591 -1.7639 46 1 9.5226 -4.4241 -1.6220 47 1 8.8313 -5.3251 -0.2513 48 1 7.5314 -1.3536 -1.1629 49 1 9.1687 -1.9083 -1.5868 50 1 7.7643 -2.4902 -2.5127 51 1 1.6858 -2.1405 -0.0054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087278285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:19 Heat of formation + Delta-G solvation = 58.028653 kcal Electronic energy + Delta-G solvation = -31261.877118 eV Core-core repulsion = 27356.002700 eV Total energy + Delta-G solvation = -3905.874417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17340 -40.48812 -38.65943 -35.41976 -34.10706 -33.34090 -32.80696 -32.02801 -30.35243 -29.87068 -27.65620 -26.87393 -25.71045 -25.20969 -23.76449 -22.99985 -22.46050 -21.20850 -20.40684 -19.33857 -18.09747 -17.44052 -17.11444 -16.83036 -16.47932 -15.62966 -15.19303 -14.86196 -14.72746 -14.42771 -14.21495 -13.87815 -13.76750 -13.57034 -13.34049 -13.10916 -13.06525 -12.95146 -12.68080 -12.51771 -12.24751 -12.16454 -12.10506 -11.63222 -11.34359 -11.16677 -11.02057 -10.85283 -10.77947 -10.53393 -10.31580 -10.19748 -10.06556 -10.00219 -9.77820 -9.59228 -9.53580 -9.37171 -9.29315 -9.09064 -8.64434 -8.33824 -6.64699 -5.78027 -3.22281 0.39231 0.89255 2.75565 3.09707 3.36269 3.43947 3.44081 3.60407 4.00856 4.37131 4.48095 4.50483 4.58570 4.63453 4.83303 4.94092 5.07282 5.16498 5.19251 5.31185 5.32664 5.36369 5.48011 5.56905 5.62059 5.70220 5.74510 5.81917 5.84015 5.92767 6.01879 6.11541 6.18412 6.25113 6.25994 6.30741 6.45664 6.45999 6.54955 6.58511 6.62859 6.75342 6.79350 6.83194 6.96998 7.11713 7.20714 7.45564 7.53475 7.57536 7.74587 7.84268 8.18817 8.45352 9.24893 9.89940 10.33454 11.27844 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002928 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.572571 B = 9560.697382 C =10476.530793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.147 4.147 3 C 0.117 3.883 4 N -0.482 5.482 5 C 0.128 3.872 6 C -0.177 4.177 7 C 0.562 3.438 8 O -0.537 6.537 9 N -0.697 5.697 10 C 0.123 3.877 11 H 0.096 0.904 12 C -0.127 4.127 13 H 0.069 0.931 14 C -0.106 4.106 15 C -0.145 4.145 16 C 0.177 3.823 17 N -0.570 5.570 18 C -0.260 4.260 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.187 3.813 27 H 0.070 0.930 28 C -0.112 4.112 29 C -0.135 4.135 30 C -0.125 4.125 31 C -0.020 4.020 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.400 0.600 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.039 0.961 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.098 5.497 -2.178 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C -0.040 4.040 4 N -0.189 5.189 5 C -0.031 4.031 6 C -0.182 4.182 7 C 0.347 3.653 8 O -0.415 6.415 9 N -0.348 5.348 10 C 0.018 3.982 11 H 0.114 0.886 12 C -0.148 4.148 13 H 0.087 0.913 14 C -0.144 4.144 15 C -0.184 4.184 16 C 0.052 3.948 17 N -0.288 5.288 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.077 3.923 27 H 0.088 0.912 28 C -0.116 4.116 29 C -0.192 4.192 30 C -0.183 4.183 31 C -0.047 4.047 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.237 0.763 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.062 0.938 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.840 5.437 -2.206 19.732 hybrid contribution 0.607 0.288 0.235 0.711 sum -18.233 5.726 -1.971 19.212 Atomic orbital electron populations 1.20735 0.89622 1.03414 1.02903 1.20947 0.98016 0.93770 1.02160 1.22910 0.89955 0.97675 0.93460 1.67710 1.08019 1.30944 1.12277 1.23009 1.00387 0.86847 0.92813 1.21084 0.95211 0.94967 1.06926 1.17999 0.82321 0.88224 0.76708 1.90767 1.71125 1.29570 1.50037 1.45727 1.05269 1.10224 1.73537 1.22391 0.91472 0.86111 0.98232 0.88623 1.23196 0.98333 0.97206 0.96113 0.91271 1.21200 0.97482 0.93997 1.01678 1.21763 0.97184 0.99728 0.99700 1.20701 0.93674 0.83016 0.97412 1.43237 1.04325 1.03832 1.77375 1.19232 0.85724 0.92487 1.41555 0.91785 1.24981 0.97782 0.97282 0.99095 1.70046 1.18867 1.20893 1.44840 0.86325 0.82330 0.80156 0.78128 1.21565 1.21836 1.20555 1.21276 0.85419 0.95306 0.90332 0.91221 1.23016 0.92317 0.96915 0.99359 1.22048 0.99363 0.95986 1.01758 1.21578 1.02063 0.96679 0.97979 1.21639 0.92475 0.99006 0.91538 0.90637 0.90936 0.91006 0.82342 0.82367 0.76305 0.93398 0.90532 0.92794 0.93061 0.94131 0.91075 0.93702 0.94896 0.91950 0.88493 0.94243 0.91507 0.93835 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.03 36.01 0.36 -0.22 16 2 C -0.15 -1.25 5.89 -104.54 -0.62 -1.86 16 3 C 0.12 1.04 10.85 -17.47 -0.19 0.85 16 4 N -0.48 -5.41 10.35 -12.91 -0.13 -5.54 16 5 C 0.13 1.42 10.71 -17.13 -0.18 1.23 16 6 C -0.18 -2.12 5.89 -104.82 -0.62 -2.74 16 7 C 0.56 8.10 7.78 -12.33 -0.10 8.01 16 8 O -0.54 -9.41 16.06 5.32 0.09 -9.32 16 9 N -0.70 -9.65 4.73 -53.74 -0.25 -9.90 16 10 C 0.12 1.97 3.30 -66.89 -0.22 1.75 16 11 H 0.10 1.64 7.42 -51.93 -0.39 1.25 16 12 C -0.13 -2.20 4.15 -89.88 -0.37 -2.57 16 13 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 14 C -0.11 -1.81 5.12 -27.57 -0.14 -1.95 16 15 C -0.14 -2.70 5.96 -27.64 -0.16 -2.86 16 16 C 0.18 3.98 3.98 -4.40 -0.02 3.96 16 17 N -0.57 -13.11 2.64 -166.86 -0.44 -13.55 16 18 C -0.26 -6.70 9.48 -15.06 -0.14 -6.84 16 19 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 20 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 21 N -0.90 -24.73 10.91 55.49 0.61 -24.12 16 22 Si 0.90 21.11 29.58 -169.99 -5.03 16.09 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C 0.19 3.60 3.43 -68.39 -0.23 3.37 16 27 H 0.07 1.34 7.95 -51.93 -0.41 0.92 16 28 C -0.11 -1.93 1.33 -153.85 -0.20 -2.14 16 29 C -0.13 -2.48 7.28 37.16 0.27 -2.21 16 30 C -0.13 -2.00 8.91 37.16 0.33 -1.67 16 31 C -0.02 -0.21 9.39 -38.87 -0.37 -0.58 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.16 1.49 6.42 -52.49 -0.34 1.15 16 37 H 0.40 4.82 4.84 -40.82 -0.20 4.62 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.30 4.69 -51.93 -0.24 1.06 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.97 5.53 -51.92 -0.29 0.68 16 43 H 0.07 1.82 6.47 -51.93 -0.34 1.48 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 47 H 0.10 1.88 1.86 -51.93 -0.10 1.78 16 48 H 0.04 0.53 5.96 -51.93 -0.31 0.22 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.15 1.49 7.74 -52.49 -0.41 1.09 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -29.95 386.42 -9.65 -39.60 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.62 Total: 7.29 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.69 Total: -6.37 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.22 Total: -53.11 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.95 -9.65 -39.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087278285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.627 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds