Wall clock time and date at job start Wed Apr 1 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38636 * 120.46608 * 2 1 4 4 C 1.38584 * 118.48643 * 180.02562 * 3 2 1 5 5 C 1.38597 * 119.35142 * 359.97438 * 4 3 2 6 6 N 1.31492 * 120.90376 * 359.74976 * 5 4 3 7 7 C 1.32748 * 121.64056 * 0.52102 * 6 5 4 8 8 C 1.48168 * 119.72071 * 179.75135 * 7 6 5 9 9 O 1.21512 * 119.99580 * 180.74706 * 8 7 6 10 10 N 1.34778 * 120.00163 * 0.75005 * 8 7 6 11 11 C 1.46500 * 119.99696 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.86902 * 23.73644 * 11 10 8 13 13 C 1.54151 * 113.71853 * 252.38410 * 11 10 8 14 14 H 1.09002 * 114.24256 * 26.67371 * 13 11 10 15 15 C 1.53039 * 111.74997 * 157.36296 * 13 11 10 16 16 C 1.53015 * 109.42211 * 146.29426 * 15 13 11 17 17 C 1.52944 * 109.02048 * 295.51708 * 16 15 13 18 18 N 1.45894 * 109.88940 * 57.28847 * 17 16 15 19 19 C 1.36935 * 118.47973 * 140.64200 * 18 17 16 20 20 H 1.08008 * 119.99675 * 210.62865 * 19 18 17 21 21 C 1.38812 * 120.00386 * 30.62728 * 19 18 17 22 22 N 1.31621 * 119.99764 * 11.76695 * 21 19 18 23 23 Si 1.86799 * 119.99996 * 191.77255 * 21 19 18 24 24 H 1.48502 * 109.47315 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47334 * 120.00179 * 23 21 19 26 26 H 1.48504 * 109.46944 * 239.99611 * 23 21 19 27 27 C 1.45086 * 123.03229 * 320.66692 * 18 17 16 28 28 H 1.09007 * 112.25403 * 155.78484 * 27 18 17 29 29 C 1.53388 * 114.62754 * 286.23029 * 27 18 17 30 30 C 1.52999 * 113.68489 * 257.75518 * 29 27 18 31 31 C 1.52999 * 113.68819 * 28.78966 * 29 27 18 32 32 H 1.08999 * 109.47234 * 262.55686 * 1 2 3 33 33 H 1.09000 * 109.47730 * 22.55974 * 1 2 3 34 34 H 1.09005 * 109.47309 * 142.56140 * 1 2 3 35 35 H 1.08005 * 120.75512 * 0.02562 * 3 2 1 36 36 H 1.08007 * 120.32007 * 179.97438 * 4 3 2 37 37 H 1.08006 * 119.54507 * 179.97438 * 5 4 3 38 38 H 0.96999 * 119.99657 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.38407 * 26.36203 * 15 13 11 40 40 H 1.09001 * 109.56732 * 266.33342 * 15 13 11 41 41 H 1.09004 * 109.56357 * 175.62913 * 16 15 13 42 42 H 1.09003 * 109.56503 * 55.40421 * 16 15 13 43 43 H 1.09004 * 109.40274 * 177.42190 * 17 16 15 44 44 H 1.09000 * 109.39912 * 297.25031 * 17 16 15 45 45 H 0.96997 * 119.99329 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.47171 * 59.99980 * 30 29 27 47 47 H 1.08999 * 109.47077 * 179.97438 * 30 29 27 48 48 H 1.08994 * 109.47551 * 299.99749 * 30 29 27 49 49 H 1.09000 * 109.46691 * 28.61348 * 31 29 27 50 50 H 1.08993 * 109.47289 * 148.61833 * 31 29 27 51 51 H 1.08999 * 109.47378 * 268.61958 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1471 -0.0005 5 6 4.2321 -0.0837 -0.0005 6 7 3.5407 -1.2022 0.0049 7 6 2.2132 -1.2003 0.0003 8 6 1.4768 -2.4860 0.0012 9 8 0.2618 -2.4902 -0.0167 10 7 2.1545 -3.6508 0.0219 11 6 1.4263 -4.9220 0.0234 12 1 0.4239 -4.8364 -0.3962 13 6 1.4692 -5.6596 1.3763 14 1 1.6038 -5.0062 2.2382 15 6 0.3018 -6.6378 1.5261 16 6 0.7582 -7.8550 2.3333 17 6 1.8351 -8.6012 1.5441 18 7 2.9459 -7.7028 1.2485 19 6 4.2217 -8.1940 1.3272 20 1 5.0355 -7.5411 1.6068 21 6 4.4692 -9.5310 1.0478 22 7 3.5351 -10.2701 0.4878 23 14 6.1279 -10.2812 1.4666 24 1 6.9972 -9.2474 2.0837 25 1 5.9372 -11.4025 2.4214 26 1 6.7681 -10.7901 0.2271 27 6 2.7613 -6.3129 0.8755 28 1 3.6383 -5.7054 1.0995 29 6 2.2367 -6.0978 -0.5497 30 6 3.3179 -5.6719 -1.5449 31 6 1.3718 -7.2492 -1.0666 32 1 -0.3633 -0.1331 1.0190 33 1 -0.3634 0.9490 -0.3942 34 1 -0.3634 -0.8160 -0.6248 35 1 1.6899 2.1416 0.0004 36 1 4.1720 2.0600 -0.0010 37 1 5.3114 -0.1247 -0.0014 38 1 3.1244 -3.6474 0.0367 39 1 -0.0294 -6.9598 0.5388 40 1 -0.5221 -6.1465 2.0437 41 1 -0.0904 -8.5164 2.5078 42 1 1.1677 -7.5267 3.2887 43 1 2.1975 -9.4436 2.1334 44 1 1.4100 -8.9688 0.6102 45 1 3.7080 -11.2044 0.2930 46 1 4.0886 -6.4411 -1.5954 47 1 2.8723 -5.5394 -2.5308 48 1 3.7631 -4.7324 -1.2178 49 1 0.8784 -7.7383 -0.2267 50 1 0.6200 -6.8592 -1.7527 51 1 2.0008 -7.9702 -1.5885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087278849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:36 Heat of formation + Delta-G solvation = 61.239024 kcal Electronic energy + Delta-G solvation = -31592.101017 eV Core-core repulsion = 27686.365812 eV Total energy + Delta-G solvation = -3905.735205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.10858 -40.43703 -38.49519 -35.36699 -33.97737 -33.05940 -32.58344 -32.02742 -30.31771 -29.77353 -27.68114 -26.74254 -25.52235 -25.12880 -23.99464 -22.45630 -22.35331 -21.21742 -20.60073 -19.28076 -18.20752 -17.34197 -16.80601 -16.75192 -15.83258 -15.60282 -15.33401 -15.06195 -14.70007 -14.32884 -14.09365 -13.76974 -13.53149 -13.50442 -13.39662 -13.03140 -12.86712 -12.67743 -12.48042 -12.36905 -12.17018 -12.07950 -11.99521 -11.57100 -11.30124 -11.09492 -10.97573 -10.80601 -10.74631 -10.42672 -10.15967 -10.13310 -10.05404 -9.93992 -9.71954 -9.48900 -9.43375 -9.32163 -9.18852 -9.00527 -8.50140 -8.33830 -6.54251 -5.74141 -3.22583 0.46820 0.95416 2.72785 3.19318 3.37445 3.45943 3.47413 3.70046 4.02964 4.49453 4.51254 4.57729 4.67197 4.71634 5.04920 5.11450 5.16145 5.31802 5.36793 5.44789 5.46379 5.53818 5.62556 5.67225 5.75093 5.78127 5.89866 5.92529 6.01736 6.05020 6.14923 6.20576 6.24424 6.31694 6.36567 6.43665 6.48579 6.54942 6.64468 6.67129 6.71628 6.79614 6.87205 6.90088 7.04734 7.19345 7.27761 7.46545 7.47746 7.79148 7.80215 7.86856 8.32617 8.52209 9.29952 9.93982 10.39877 11.31381 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.003168 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.298008 B = 8837.043229 C = 9833.394428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.149 4.149 5 C 0.090 3.910 6 N -0.453 5.453 7 C 0.075 3.925 8 C 0.569 3.431 9 O -0.533 6.533 10 N -0.682 5.682 11 C 0.121 3.879 12 H 0.096 0.904 13 C -0.129 4.129 14 H 0.068 0.932 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.569 5.569 19 C -0.261 4.261 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.188 3.812 28 H 0.069 0.931 29 C -0.110 4.110 30 C -0.127 4.127 31 C -0.132 4.132 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.411 0.589 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.031 0.969 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 20.006 -1.721 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.077 4.077 3 C -0.115 4.115 4 C -0.169 4.169 5 C -0.070 4.070 6 N -0.164 5.164 7 C -0.063 4.063 8 C 0.354 3.646 9 O -0.411 6.411 10 N -0.332 5.332 11 C 0.015 3.985 12 H 0.114 0.886 13 C -0.150 4.150 14 H 0.086 0.914 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.054 3.946 18 N -0.287 5.287 19 C -0.391 4.391 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.544 5.544 23 Si 0.729 3.271 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.078 3.922 28 H 0.087 0.913 29 C -0.114 4.114 30 C -0.184 4.184 31 C -0.188 4.188 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.249 0.751 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.110 0.890 50 H 0.050 0.950 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.151 18.936 -1.751 19.465 hybrid contribution 1.204 0.590 0.174 1.352 sum -2.948 19.526 -1.577 19.810 Atomic orbital electron populations 1.21134 0.88974 1.03530 1.04187 1.20971 0.98498 0.92352 0.95836 1.21559 0.94179 0.98074 0.97698 1.22365 0.95278 0.99836 0.99382 1.22794 1.00540 0.87282 0.96413 1.67567 1.07142 1.32011 1.09649 1.21104 0.89829 0.93821 1.01524 1.17846 0.86675 0.83103 0.77007 1.90691 1.12846 1.86693 1.50839 1.45677 1.11104 1.04660 1.71747 1.22395 0.96277 0.81636 0.98182 0.88579 1.23222 0.98511 0.97145 0.96118 0.91376 1.21549 0.95723 0.95765 1.01377 1.22061 0.99742 0.96943 0.99503 1.20631 0.85944 0.91292 0.96742 1.43183 1.03281 1.05181 1.77029 1.19238 0.85598 0.93942 1.40307 0.91969 1.25085 0.97177 0.98126 0.98494 1.70031 1.32968 1.07138 1.44288 0.86280 0.84086 0.79113 0.77609 1.20351 1.21706 1.21776 1.21259 0.93510 0.87129 0.90331 0.91334 1.22958 0.95992 0.93524 0.98975 1.21585 0.98740 1.00348 0.97761 1.21980 0.98396 0.96939 1.01529 0.90474 0.92360 0.87578 0.84259 0.84324 0.82047 0.75120 0.90258 0.93501 0.92923 0.92964 0.91687 0.94191 0.93796 0.91668 0.94031 0.93757 0.88952 0.94952 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.82 36.00 0.32 -0.96 16 2 C -0.07 -0.83 5.93 -104.10 -0.62 -1.45 16 3 C -0.09 -0.75 9.83 -39.31 -0.39 -1.14 16 4 C -0.15 -1.12 10.11 -39.32 -0.40 -1.52 16 5 C 0.09 0.84 11.18 -17.56 -0.20 0.64 16 6 N -0.45 -5.71 9.54 -9.80 -0.09 -5.80 16 7 C 0.08 1.02 6.75 -83.01 -0.56 0.46 16 8 C 0.57 8.84 7.79 -12.18 -0.09 8.74 16 9 O -0.53 -9.09 12.82 5.36 0.07 -9.03 16 10 N -0.68 -10.63 4.67 -53.63 -0.25 -10.88 16 11 C 0.12 2.04 3.34 -66.88 -0.22 1.81 16 12 H 0.10 1.69 7.35 -51.93 -0.38 1.31 16 13 C -0.13 -2.32 4.11 -89.89 -0.37 -2.69 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.11 -1.86 5.18 -26.70 -0.14 -2.00 16 16 C -0.14 -2.72 6.03 -26.75 -0.16 -2.88 16 17 C 0.18 4.10 3.99 -4.40 -0.02 4.08 16 18 N -0.57 -13.46 2.65 -166.86 -0.44 -13.90 16 19 C -0.26 -6.88 9.42 -15.06 -0.14 -7.02 16 20 H 0.06 1.65 7.85 -52.48 -0.41 1.23 16 21 C 0.01 0.27 4.95 -17.43 -0.09 0.19 16 22 N -0.90 -25.00 11.07 55.49 0.61 -24.39 16 23 Si 0.90 21.36 29.57 -169.99 -5.03 16.34 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.19 3.81 3.35 -68.39 -0.23 3.58 16 28 H 0.07 1.42 7.89 -51.92 -0.41 1.01 16 29 C -0.11 -2.02 1.34 -153.85 -0.21 -2.22 16 30 C -0.13 -2.20 8.99 37.16 0.33 -1.87 16 31 C -0.13 -2.51 7.33 37.16 0.27 -2.24 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.11 1.35 5.70 -51.93 -0.30 1.06 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 36 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 37 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.41 6.21 6.14 -40.82 -0.25 5.96 16 39 H 0.08 1.38 4.66 -51.93 -0.24 1.14 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.68 6.73 -51.93 -0.35 1.33 16 44 H 0.04 0.98 5.60 -51.93 -0.29 0.68 16 45 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.04 0.69 5.91 -51.93 -0.31 0.39 16 49 H 0.09 1.83 2.00 -51.93 -0.10 1.72 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -29.42 383.64 -9.92 -39.33 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.67 Total: 9.03 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.90 Total: -6.48 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.17 Total: -54.97 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.42 -9.92 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087278849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.571 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds