Wall clock time and date at job start Wed Apr 1 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38409 * 120.85586 * 2 1 4 4 C 1.38306 * 119.30521 * 180.30244 * 3 2 1 5 5 N 1.31961 * 121.07942 * 359.71467 * 4 3 2 6 6 C 1.31666 * 121.88063 * 0.02562 * 5 4 3 7 7 C 1.39556 * 120.56477 * 0.02562 * 6 5 4 8 8 C 1.47840 * 120.55857 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00083 * 175.01760 * 8 7 6 10 10 N 1.34780 * 120.00196 * 355.01938 * 8 7 6 11 11 C 1.46494 * 120.00109 * 179.97438 * 10 8 7 12 12 H 1.09004 * 112.87062 * 23.73324 * 11 10 8 13 13 C 1.54153 * 113.72013 * 252.38353 * 11 10 8 14 14 H 1.09005 * 114.24181 * 104.28280 * 13 11 10 15 15 C 1.53060 * 111.68553 * 333.50913 * 13 11 10 16 16 C 1.53026 * 109.40602 * 213.59281 * 15 13 11 17 17 C 1.52940 * 108.92996 * 64.64744 * 16 15 13 18 18 N 1.45886 * 109.88934 * 302.65235 * 17 16 15 19 19 C 1.36947 * 118.48622 * 219.31438 * 18 17 16 20 20 H 1.07992 * 119.99956 * 153.33828 * 19 18 17 21 21 C 1.38808 * 119.99595 * 333.33930 * 19 18 17 22 22 N 1.31625 * 120.00253 * 341.14939 * 21 19 18 23 23 Si 1.86806 * 119.99995 * 161.14977 * 21 19 18 24 24 H 1.48504 * 109.46778 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47203 * 119.99556 * 23 21 19 26 26 H 1.48493 * 109.46994 * 240.00017 * 23 21 19 27 27 C 1.45097 * 123.03283 * 39.34142 * 18 17 16 28 28 H 1.09001 * 112.25068 * 204.20752 * 27 18 17 29 29 C 1.53379 * 114.62794 * 73.76555 * 27 18 17 30 30 C 1.53005 * 113.68681 * 331.11096 * 29 27 18 31 31 C 1.52994 * 113.69130 * 102.15056 * 29 27 18 32 32 H 1.09003 * 109.46785 * 262.02311 * 1 2 3 33 33 H 1.08995 * 109.47601 * 22.02301 * 1 2 3 34 34 H 1.08993 * 109.47377 * 142.02770 * 1 2 3 35 35 H 1.07997 * 120.34612 * 0.03834 * 3 2 1 36 36 H 1.07997 * 119.46003 * 179.70350 * 4 3 2 37 37 H 1.07997 * 119.71569 * 179.97438 * 6 5 4 38 38 H 0.97006 * 119.99758 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.48342 * 93.61485 * 15 13 11 40 40 H 1.08991 * 109.48496 * 333.57112 * 15 13 11 41 41 H 1.09005 * 109.56337 * 304.81147 * 16 15 13 42 42 H 1.08998 * 109.56129 * 184.48518 * 16 15 13 43 43 H 1.08995 * 109.40293 * 62.78565 * 17 16 15 44 44 H 1.09004 * 109.39863 * 182.52898 * 17 16 15 45 45 H 0.96998 * 120.00042 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.47023 * 92.39911 * 30 29 27 47 47 H 1.09001 * 109.47326 * 212.39564 * 30 29 27 48 48 H 1.09000 * 109.46970 * 332.39754 * 30 29 27 49 49 H 1.09002 * 109.47302 * 59.99204 * 31 29 27 50 50 H 1.08999 * 109.47364 * 179.97438 * 31 29 27 51 51 H 1.09001 * 109.47254 * 300.00148 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1882 0.0000 4 6 3.5994 1.1508 -0.0064 5 7 4.2498 0.0026 -0.0068 6 6 3.6197 -1.1535 -0.0017 7 6 2.2250 -1.2016 0.0038 8 6 1.5177 -2.4998 0.0089 9 8 0.3063 -2.5316 0.1051 10 7 2.2159 -3.6482 -0.0931 11 6 1.5150 -4.9346 -0.0874 12 1 0.4759 -4.8522 -0.4060 13 6 1.7001 -5.7359 1.2164 14 1 0.8335 -5.7215 1.8774 15 6 3.0137 -5.3804 1.9171 16 6 3.5684 -6.6224 2.6180 17 6 3.9262 -7.6696 1.5623 18 7 2.7510 -7.9845 0.7573 19 6 2.5424 -9.2865 0.3875 20 1 1.5406 -9.6376 0.1894 21 6 3.6187 -10.1547 0.2673 22 7 4.8385 -9.6771 0.1387 23 14 3.3361 -12.0012 0.2880 24 1 1.8854 -12.2781 0.4430 25 1 3.8195 -12.5903 -0.9866 26 1 4.0787 -12.6028 1.4245 27 6 1.7933 -6.9819 0.3299 28 1 0.8121 -7.4096 0.1239 29 6 2.2890 -6.0620 -0.7929 30 6 3.8054 -5.8579 -0.7959 31 6 1.7339 -6.4217 -2.1725 32 1 -0.3633 -0.1426 1.0178 33 1 -0.3634 0.9526 -0.3853 34 1 -0.3634 -0.8100 -0.6322 35 1 1.6966 2.1346 0.0006 36 1 4.1557 2.0764 -0.0112 37 1 4.1871 -2.0725 -0.0027 38 1 3.1825 -3.6228 -0.1702 39 1 2.8325 -4.5977 2.6538 40 1 3.7346 -5.0264 1.1802 41 1 2.8148 -7.0277 3.2932 42 1 4.4609 -6.3544 3.1834 43 1 4.7131 -7.2791 0.9170 44 1 4.2803 -8.5748 2.0557 45 1 5.5906 -10.2839 0.0543 46 1 4.2701 -6.5966 -1.4491 47 1 4.0365 -4.8562 -1.1580 48 1 4.1898 -5.9757 0.2173 49 1 0.6461 -6.3554 -2.1550 50 1 2.1280 -5.7278 -2.9149 51 1 2.0317 -7.4380 -2.4303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087279680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:48 Heat of formation + Delta-G solvation = 59.732972 kcal Electronic energy + Delta-G solvation = -31753.225154 eV Core-core repulsion = 27847.424642 eV Total energy + Delta-G solvation = -3905.800512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.22405 -40.47078 -38.56216 -35.32292 -34.07763 -33.36461 -32.85319 -31.50764 -30.23752 -29.97774 -28.12916 -26.93571 -25.56446 -25.15948 -24.05923 -22.61458 -22.26285 -21.34589 -20.22148 -19.44576 -18.09997 -17.33463 -16.98493 -16.66393 -16.39798 -15.62982 -15.21397 -15.10138 -14.88341 -14.57302 -14.21875 -13.99804 -13.60205 -13.34332 -13.24339 -13.01050 -12.90874 -12.76166 -12.64650 -12.52077 -12.31984 -12.17695 -11.94836 -11.60393 -11.46052 -11.16625 -11.03256 -10.87069 -10.73903 -10.42815 -10.24487 -10.18343 -10.02269 -9.84493 -9.77574 -9.60043 -9.49237 -9.43052 -9.41318 -9.13829 -8.58420 -8.37408 -6.66543 -5.80353 -3.22469 0.43952 0.93119 2.80870 3.20837 3.35592 3.44819 3.46622 3.62817 4.04944 4.41367 4.44363 4.48732 4.62019 4.78391 4.97020 5.03752 5.12912 5.24646 5.27760 5.30533 5.37341 5.45267 5.55537 5.59055 5.60658 5.65314 5.82911 5.88326 5.92449 5.97435 6.09153 6.13321 6.15513 6.21296 6.26908 6.35108 6.37198 6.44887 6.53960 6.55998 6.62481 6.69729 6.74776 6.81952 6.96698 7.03846 7.18747 7.37095 7.58619 7.62537 7.68636 7.82680 8.23520 8.44131 9.23093 9.88673 10.32617 11.25816 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022275 B = 0.002915 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.692395 B = 9602.429011 C = 9939.172734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.017 3.983 3 C -0.186 4.186 4 C 0.120 3.880 5 N -0.492 5.492 6 C 0.139 3.861 7 C -0.190 4.190 8 C 0.559 3.441 9 O -0.536 6.536 10 N -0.701 5.701 11 C 0.125 3.875 12 H 0.109 0.891 13 C -0.132 4.132 14 H 0.072 0.928 15 C -0.103 4.103 16 C -0.145 4.145 17 C 0.178 3.822 18 N -0.567 5.567 19 C -0.261 4.261 20 H 0.066 0.934 21 C 0.009 3.991 22 N -0.898 5.898 23 Si 0.896 3.104 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.189 3.811 28 H 0.075 0.925 29 C -0.111 4.111 30 C -0.139 4.139 31 C -0.126 4.126 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.399 0.601 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.252 0.748 46 H 0.066 0.934 47 H 0.027 0.973 48 H 0.094 0.906 49 H 0.045 0.955 50 H 0.039 0.961 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 19.373 -0.183 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.036 4.036 5 N -0.201 5.201 6 C -0.020 4.020 7 C -0.195 4.195 8 C 0.346 3.654 9 O -0.415 6.415 10 N -0.352 5.352 11 C 0.021 3.979 12 H 0.127 0.873 13 C -0.153 4.153 14 H 0.090 0.910 15 C -0.140 4.140 16 C -0.184 4.184 17 C 0.053 3.947 18 N -0.284 5.284 19 C -0.391 4.391 20 H 0.083 0.917 21 C -0.190 4.190 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.078 3.922 28 H 0.093 0.907 29 C -0.116 4.116 30 C -0.195 4.195 31 C -0.183 4.183 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.237 0.763 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.046 0.954 48 H 0.112 0.888 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.223 19.228 -0.117 19.496 hybrid contribution -0.410 -0.889 -0.105 0.984 sum -3.632 18.339 -0.222 18.697 Atomic orbital electron populations 1.21066 0.89066 1.03275 1.04294 1.20518 0.97597 0.91333 0.89664 1.22079 0.95579 0.98655 1.04291 1.22967 0.91775 0.96441 0.92414 1.67709 1.40833 0.98267 1.13258 1.23003 0.90528 0.96610 0.91852 1.20990 0.95207 0.94710 1.08582 1.18030 0.87065 0.83523 0.76792 1.90714 1.13445 1.87193 1.50132 1.46035 1.10723 1.05655 1.72794 1.22899 0.97199 0.79832 0.98003 0.87271 1.23272 0.98054 0.97974 0.95984 0.90968 1.21484 0.96158 0.97508 0.98840 1.22071 0.99663 0.97104 0.99516 1.20608 0.88436 0.95620 0.90019 1.43191 1.24985 1.03431 1.56820 1.19241 0.92323 0.85480 1.42054 0.91674 1.24952 0.95722 0.98168 1.00190 1.70084 0.98251 1.33269 1.52545 0.86324 0.77676 0.86163 0.77192 1.20320 1.21855 1.21657 1.21024 0.93697 0.87040 0.90436 0.90694 1.23005 0.95819 0.95948 0.96790 1.22029 0.93990 0.98672 1.04842 1.21613 0.99333 1.01670 0.95694 0.89963 0.91984 0.88273 0.84201 0.82316 0.82517 0.76343 0.93809 0.90956 0.92735 0.92957 0.94367 0.91650 0.93790 0.91520 0.95406 0.88805 0.93561 0.94184 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.78 36.00 0.32 -0.89 16 2 C 0.02 0.19 5.95 -103.91 -0.62 -0.43 16 3 C -0.19 -1.58 9.78 -39.49 -0.39 -1.96 16 4 C 0.12 1.06 11.17 -17.47 -0.20 0.87 16 5 N -0.49 -5.55 10.35 -12.91 -0.13 -5.68 16 6 C 0.14 1.56 10.70 -17.13 -0.18 1.38 16 7 C -0.19 -2.29 5.89 -104.82 -0.62 -2.91 16 8 C 0.56 7.84 7.73 -12.33 -0.10 7.74 16 9 O -0.54 -8.72 13.13 5.32 0.07 -8.65 16 10 N -0.70 -9.50 4.31 -53.73 -0.23 -9.73 16 11 C 0.13 1.94 3.62 -66.88 -0.24 1.69 16 12 H 0.11 1.77 7.30 -51.93 -0.38 1.39 16 13 C -0.13 -2.21 4.29 -89.88 -0.39 -2.59 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.10 -1.64 4.66 -26.69 -0.12 -1.76 16 16 C -0.14 -2.60 6.04 -26.75 -0.16 -2.76 16 17 C 0.18 3.91 4.02 -4.40 -0.02 3.90 16 18 N -0.57 -12.91 2.66 -166.88 -0.44 -13.36 16 19 C -0.26 -6.73 9.44 -15.06 -0.14 -6.87 16 20 H 0.07 1.69 7.87 -52.49 -0.41 1.27 16 21 C 0.01 0.23 4.78 -17.43 -0.08 0.15 16 22 N -0.90 -24.46 11.25 55.49 0.62 -23.84 16 23 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.19 3.66 3.51 -68.39 -0.24 3.42 16 28 H 0.08 1.48 7.97 -51.93 -0.41 1.07 16 29 C -0.11 -1.89 1.35 -153.86 -0.21 -2.10 16 30 C -0.14 -2.39 6.88 37.16 0.26 -2.13 16 31 C -0.13 -2.08 9.15 37.15 0.34 -1.74 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.10 1.20 6.07 -51.93 -0.32 0.88 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.16 1.52 6.45 -52.49 -0.34 1.18 16 38 H 0.40 4.87 3.74 -40.82 -0.15 4.71 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.11 3.66 -51.93 -0.19 0.92 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.89 5.66 -51.93 -0.29 0.60 16 44 H 0.07 1.64 6.64 -51.93 -0.34 1.30 16 45 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 46 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 47 H 0.03 0.39 6.49 -51.93 -0.34 0.05 16 48 H 0.09 1.69 1.97 -51.93 -0.10 1.59 16 49 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 50 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -29.04 379.67 -9.68 -38.72 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.47 Total: 7.79 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.79 Total: -7.01 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.18 Total: -52.60 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.04 -9.68 -38.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087279680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.452 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds