Wall clock time and date at job start Wed Apr 1 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38173 * 119.54824 * 2 1 4 4 C 1.39803 * 118.99770 * 180.02562 * 3 2 1 5 5 C 1.48144 * 120.92320 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00078 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99944 * 179.97438 * 7 5 4 9 9 H 1.09001 * 113.34277 * 28.42980 * 8 7 5 10 10 C 1.50001 * 114.12872 * 255.49648 * 8 7 5 11 11 H 1.09003 * 112.51122 * 170.15598 * 10 8 7 12 12 C 1.51212 * 126.16139 * 27.75536 * 10 8 7 13 13 C 1.55140 * 105.67007 * 198.22314 * 12 10 8 14 14 C 1.52499 * 112.59496 * 55.75556 * 13 12 10 15 15 N 1.48406 * 111.86367 * 313.00320 * 14 13 12 16 16 C 1.36943 * 123.16711 * 231.81220 * 15 14 13 17 17 H 1.08001 * 119.99077 * 153.48402 * 16 15 14 18 18 C 1.38805 * 120.00306 * 333.48875 * 16 15 14 19 19 N 1.31620 * 119.99902 * 348.46302 * 18 16 15 20 20 Si 1.86805 * 120.00156 * 168.46231 * 18 16 15 21 21 H 1.48499 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46927 * 119.99697 * 20 18 16 23 23 H 1.48496 * 109.46998 * 239.99937 * 20 18 16 24 24 C 1.45378 * 113.66282 * 51.84140 * 15 14 13 25 25 H 1.09000 * 112.08543 * 59.74914 * 24 15 14 26 26 C 1.49960 * 126.22396 * 204.16380 * 24 15 14 27 27 C 1.53002 * 114.08473 * 25.66761 * 26 24 15 28 28 C 1.52998 * 114.08705 * 253.24351 * 26 24 15 29 29 C 1.39840 * 118.15629 * 0.24892 * 4 3 2 30 30 C 1.38128 * 118.99839 * 359.52659 * 29 4 3 31 31 N 1.31791 * 119.55256 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47329 * 90.00065 * 1 2 3 33 33 H 1.09000 * 109.46945 * 209.99931 * 1 2 3 34 34 H 1.08997 * 109.47243 * 329.99571 * 1 2 3 35 35 H 1.07994 * 120.50649 * 359.97438 * 3 2 1 36 36 H 0.96996 * 120.00358 * 0.02562 * 7 5 4 37 37 H 1.08997 * 110.10017 * 317.76969 * 12 10 8 38 38 H 1.09007 * 110.09919 * 79.42046 * 12 10 8 39 39 H 1.08998 * 109.04969 * 294.84107 * 13 12 10 40 40 H 1.09006 * 108.63654 * 176.38598 * 13 12 10 41 41 H 1.09001 * 108.99993 * 192.38995 * 14 13 12 42 42 H 1.08995 * 109.00233 * 73.61913 * 14 13 12 43 43 H 0.97003 * 119.99651 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.46897 * 145.52226 * 27 26 24 45 45 H 1.09000 * 109.47040 * 265.52181 * 27 26 24 46 46 H 1.08996 * 109.46850 * 25.52640 * 27 26 24 47 47 H 1.09005 * 109.47280 * 306.07710 * 28 26 24 48 48 H 1.08999 * 109.47268 * 66.07873 * 28 26 24 49 49 H 1.08999 * 109.47338 * 186.07888 * 28 26 24 50 50 H 1.07990 * 120.50252 * 179.73088 * 29 4 3 51 51 H 1.08003 * 119.55004 * 180.22822 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5864 1.1886 -0.0005 5 6 4.3599 2.4521 -0.0011 6 8 3.7796 3.5197 -0.0016 7 7 5.7072 2.4174 -0.0011 8 6 6.4721 3.6670 -0.0023 9 1 5.9469 4.4952 0.4734 10 6 7.0846 4.0097 -1.3279 11 1 7.4990 5.0177 -1.3481 12 6 6.5590 3.6018 -2.6859 13 6 7.7481 3.7802 -3.6663 14 6 8.9844 2.9977 -3.2364 15 7 9.2880 3.1911 -1.7967 16 6 10.5211 3.5674 -1.3350 17 1 10.6081 4.0971 -0.3979 18 6 11.6590 3.2681 -2.0714 19 7 11.5850 2.4342 -3.0871 20 14 13.2952 4.0487 -1.6210 21 1 13.1114 4.9425 -0.4495 22 1 14.2750 2.9850 -1.2838 23 1 13.7997 4.8397 -2.7721 24 6 8.1531 2.9428 -0.9226 25 1 7.7780 1.9238 -1.0175 26 6 7.9535 3.5070 0.4524 27 6 8.6787 4.8323 0.6948 28 6 8.1546 2.4918 1.5792 29 6 4.2344 -0.0506 -0.0064 30 6 3.4741 -1.2038 -0.0014 31 7 2.1570 -1.1465 -0.0005 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5139 35 1 1.6494 2.1378 -0.0004 36 1 6.1704 1.5653 -0.0011 37 1 6.2310 2.5626 -2.6638 38 1 5.7331 4.2504 -2.9782 39 1 8.0042 4.8380 -3.7261 40 1 7.4398 3.4368 -4.6538 41 1 9.8380 3.3304 -3.8270 42 1 8.8163 1.9373 -3.4244 43 1 12.3803 2.2248 -3.6015 44 1 8.0798 5.4585 1.3561 45 1 9.6465 4.6376 1.1568 46 1 8.8263 5.3448 -0.2557 47 1 7.5206 1.6229 1.4029 48 1 9.1988 2.1803 1.6055 49 1 7.8878 2.9489 2.5320 50 1 5.3129 -0.1052 -0.0114 51 1 3.9654 -2.1657 -0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087309801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:14 Heat of formation + Delta-G solvation = 68.994726 kcal Electronic energy + Delta-G solvation = -31390.180763 eV Core-core repulsion = 27484.781870 eV Total energy + Delta-G solvation = -3905.398893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39615 -40.51308 -38.64159 -35.32476 -33.91567 -33.10491 -32.75161 -32.45554 -30.19492 -29.38149 -27.91526 -27.22185 -26.00797 -25.27965 -23.90797 -23.03009 -22.43802 -20.75714 -20.43538 -19.21562 -18.48038 -17.79571 -16.86032 -16.50738 -15.90295 -15.55760 -15.23166 -15.00176 -14.81553 -14.47196 -14.09825 -14.02383 -13.85854 -13.76410 -13.55711 -13.34442 -12.82173 -12.69073 -12.60574 -12.55094 -12.43995 -12.11516 -11.93351 -11.82254 -11.38670 -11.19337 -11.11325 -10.90228 -10.71392 -10.48800 -10.32794 -10.20711 -10.10342 -10.08975 -9.94641 -9.90932 -9.68549 -9.35185 -9.24408 -8.92497 -8.77336 -8.44509 -6.60829 -5.78212 -3.22737 0.51445 0.81613 2.79672 3.00396 3.33818 3.41865 3.42924 3.61568 3.99061 4.39272 4.44500 4.46077 4.61707 4.71852 4.78113 4.92074 5.10755 5.12992 5.21635 5.23288 5.30628 5.42402 5.45145 5.50960 5.62496 5.73427 5.75168 5.77536 5.83043 5.85892 5.90960 5.97155 6.00057 6.23158 6.24030 6.32257 6.33169 6.35515 6.41499 6.52204 6.54784 6.59704 6.70479 6.75627 6.83966 6.99165 7.09118 7.39092 7.48157 7.66284 7.67889 7.79220 8.13631 8.39136 9.15703 9.81211 10.46154 11.29306 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002911 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.875154 B = 9617.073712 C = 9767.353876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.116 4.116 4 C -0.078 4.078 5 C 0.558 3.442 6 O -0.531 6.531 7 N -0.692 5.692 8 C 0.140 3.860 9 H 0.097 0.903 10 C -0.171 4.171 11 H 0.101 0.899 12 C -0.085 4.085 13 C -0.136 4.136 14 C 0.166 3.834 15 N -0.571 5.571 16 C -0.240 4.240 17 H 0.077 0.923 18 C -0.001 4.001 19 N -0.908 5.908 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.151 3.849 25 H 0.042 0.958 26 C -0.066 4.066 27 C -0.117 4.117 28 C -0.133 4.133 29 C -0.149 4.149 30 C 0.103 3.897 31 N -0.473 5.473 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.401 0.599 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.013 0.987 43 H 0.252 0.748 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.050 0.950 50 H 0.140 0.860 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 -3.699 6.666 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.137 4.137 4 C -0.089 4.089 5 C 0.344 3.656 6 O -0.408 6.408 7 N -0.343 5.343 8 C 0.034 3.966 9 H 0.114 0.886 10 C -0.193 4.193 11 H 0.119 0.881 12 C -0.123 4.123 13 C -0.175 4.175 14 C 0.041 3.959 15 N -0.293 5.293 16 C -0.370 4.370 17 H 0.095 0.905 18 C -0.199 4.199 19 N -0.553 5.553 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.043 3.957 25 H 0.059 0.941 26 C -0.068 4.068 27 C -0.174 4.174 28 C -0.191 4.191 29 C -0.169 4.169 30 C -0.054 4.054 31 N -0.183 5.183 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.238 0.762 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.157 0.843 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.877 -3.729 6.554 18.485 hybrid contribution 1.832 0.524 -0.033 1.906 sum -15.045 -3.205 6.520 16.708 Atomic orbital electron populations 1.20732 0.88319 1.03678 1.03363 1.21315 0.97319 0.87836 0.95125 1.22113 0.93274 1.00084 0.98222 1.20442 0.94537 0.93658 1.00289 1.18096 0.82294 0.88278 0.76908 1.90764 1.69866 1.30682 1.49488 1.45631 1.05335 1.09918 1.73406 1.21594 0.91069 0.85706 0.98211 0.88554 1.23337 1.00599 1.02406 0.92908 0.88086 1.21209 0.96801 0.99438 0.94809 1.22291 0.96922 1.01202 0.97061 1.20866 0.94537 0.95383 0.85126 1.43928 1.06858 1.78567 0.99901 1.19354 0.82252 1.28862 1.06500 0.90514 1.25103 0.97667 0.97889 0.99254 1.69959 1.28029 1.35528 1.21787 0.86255 0.84309 0.78642 0.77800 1.20273 1.21836 1.21731 1.21712 0.89722 0.93692 0.90597 0.94063 1.21882 0.92617 0.97249 0.95006 1.21644 0.99197 0.94119 1.02464 1.21681 1.02154 0.97780 0.97475 1.22382 1.01712 0.92707 1.00115 1.22737 0.89102 0.98484 0.95107 1.67403 1.10303 1.29471 1.11150 0.90165 0.90283 0.90444 0.83513 0.76165 0.93279 0.93968 0.93104 0.93475 0.88836 0.96929 0.93792 0.93752 0.91717 0.90485 0.93594 0.91611 0.93054 0.84261 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.17 36.01 0.37 -0.38 16 2 C 0.12 1.26 6.78 -82.63 -0.56 0.70 16 3 C -0.12 -1.31 9.31 -39.02 -0.36 -1.67 16 4 C -0.08 -0.94 5.91 -104.65 -0.62 -1.56 16 5 C 0.56 7.99 7.80 -12.19 -0.10 7.90 16 6 O -0.53 -9.20 16.12 5.35 0.09 -9.12 16 7 N -0.69 -9.39 4.28 -58.51 -0.25 -9.64 16 8 C 0.14 2.13 3.90 -71.83 -0.28 1.85 16 9 H 0.10 1.53 7.61 -51.93 -0.39 1.14 16 10 C -0.17 -2.96 2.94 -95.83 -0.28 -3.24 16 11 H 0.10 1.87 6.10 -51.93 -0.32 1.56 16 12 C -0.08 -1.48 6.01 -26.50 -0.16 -1.64 16 13 C -0.14 -2.58 5.93 -25.86 -0.15 -2.73 16 14 C 0.17 3.80 5.32 -3.25 -0.02 3.78 16 15 N -0.57 -13.15 2.86 -169.43 -0.48 -13.63 16 16 C -0.24 -6.06 9.04 -15.06 -0.14 -6.20 16 17 H 0.08 1.87 5.18 -52.49 -0.27 1.59 16 18 C 0.00 -0.03 5.15 -17.43 -0.09 -0.12 16 19 N -0.91 -25.40 10.94 55.49 0.61 -24.79 16 20 Si 0.90 21.02 29.57 -169.99 -5.03 15.99 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.15 2.84 2.90 -72.14 -0.21 2.63 16 25 H 0.04 0.79 6.60 -51.93 -0.34 0.45 16 26 C -0.07 -1.05 1.38 -159.15 -0.22 -1.27 16 27 C -0.12 -1.88 7.28 37.16 0.27 -1.61 16 28 C -0.13 -1.88 9.10 37.16 0.34 -1.54 16 29 C -0.15 -1.50 9.62 -39.02 -0.38 -1.88 16 30 C 0.10 1.00 11.17 -17.59 -0.20 0.80 16 31 N -0.47 -5.26 10.25 -9.52 -0.10 -5.36 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.15 1.57 7.74 -52.49 -0.41 1.16 16 36 H 0.40 4.86 4.33 -40.82 -0.18 4.68 16 37 H 0.05 0.85 7.97 -51.93 -0.41 0.44 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.43 6.03 -51.93 -0.31 2.12 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.07 7.06 -51.93 -0.37 0.71 16 46 H 0.08 1.39 5.69 -51.93 -0.30 1.09 16 47 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.14 1.15 6.54 -52.49 -0.34 0.81 16 51 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -30.38 390.03 -9.82 -40.21 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.76 Total: 6.65 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.78 Total: -6.18 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.23 Total: -53.43 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.38 -9.82 -40.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.200 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds