Wall clock time and date at job start Wed Apr 1 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38177 * 119.55263 * 2 1 4 4 C 1.39800 * 119.00087 * 180.02562 * 3 2 1 5 5 C 1.48145 * 120.92305 * 179.97438 * 4 3 2 6 6 O 1.21520 * 120.00120 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00402 * 179.97438 * 5 4 3 8 8 C 1.46492 * 120.00506 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.86957 * 26.76335 * 8 7 5 10 10 C 1.54152 * 113.64160 * 255.50041 * 8 7 5 11 11 H 1.09001 * 114.24503 * 26.67551 * 10 8 7 12 12 C 1.53060 * 111.69477 * 156.94451 * 10 8 7 13 13 C 1.53018 * 109.41189 * 146.40082 * 12 10 8 14 14 C 1.52944 * 108.93536 * 295.35431 * 13 12 10 15 15 N 1.45898 * 109.88577 * 57.34183 * 14 13 12 16 16 C 1.36941 * 118.48179 * 140.64218 * 15 14 13 17 17 H 1.07990 * 120.00314 * 206.47408 * 16 15 14 18 18 C 1.38818 * 119.99817 * 26.47787 * 16 15 14 19 19 N 1.31614 * 119.99993 * 13.84094 * 18 16 15 20 20 Si 1.86796 * 119.99897 * 193.84015 * 18 16 15 21 21 H 1.48505 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46934 * 119.99879 * 20 18 16 23 23 H 1.48498 * 109.47160 * 239.99926 * 20 18 16 24 24 C 1.45855 * 123.34633 * 321.05626 * 15 14 13 25 25 H 1.08999 * 113.03180 * 156.55125 * 24 15 14 26 26 C 1.53389 * 114.07845 * 285.91572 * 24 15 14 27 27 C 1.53006 * 113.68386 * 28.28312 * 26 24 15 28 28 C 1.52993 * 113.69019 * 257.14598 * 26 24 15 29 29 C 1.39836 * 118.15362 * 0.25111 * 4 3 2 30 30 C 1.38123 * 119.00237 * 359.48306 * 29 4 3 31 31 N 1.31800 * 119.55496 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.46820 * 89.99722 * 1 2 3 33 33 H 1.08998 * 109.46973 * 210.00213 * 1 2 3 34 34 H 1.09005 * 109.46507 * 330.00068 * 1 2 3 35 35 H 1.08003 * 120.50083 * 0.02598 * 3 2 1 36 36 H 0.97006 * 119.99410 * 359.73012 * 7 5 4 37 37 H 1.09000 * 109.47982 * 266.38471 * 12 10 8 38 38 H 1.09003 * 109.48086 * 26.42384 * 12 10 8 39 39 H 1.09008 * 109.55935 * 55.18569 * 13 12 10 40 40 H 1.09001 * 109.56268 * 175.40863 * 13 12 10 41 41 H 1.08995 * 109.40281 * 177.47124 * 14 13 12 42 42 H 1.08999 * 109.39694 * 297.30457 * 14 13 12 43 43 H 0.97003 * 119.99994 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46923 * 145.71830 * 27 26 24 45 45 H 1.09003 * 109.46609 * 265.71342 * 27 26 24 46 46 H 1.08994 * 109.47465 * 25.71421 * 27 26 24 47 47 H 1.08998 * 109.47547 * 303.46628 * 28 26 24 48 48 H 1.09001 * 109.47000 * 63.46683 * 28 26 24 49 49 H 1.09001 * 109.47627 * 183.46532 * 28 26 24 50 50 H 1.07995 * 120.49665 * 179.72589 * 29 4 3 51 51 H 1.07997 * 119.55332 * 180.27084 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5865 1.1885 -0.0005 5 6 4.3600 2.4520 -0.0011 6 8 3.7797 3.5197 -0.0007 7 7 5.7073 2.4174 -0.0011 8 6 6.4722 3.6668 -0.0023 9 1 5.9286 4.4967 0.4492 10 6 7.0964 4.0082 -1.3698 11 1 6.5605 3.5920 -2.2229 12 6 7.3796 5.5063 -1.5044 13 6 8.6387 5.7121 -2.3492 14 6 9.8379 5.1240 -1.6040 15 7 9.6028 3.7120 -1.3215 16 6 10.6501 2.8383 -1.4443 17 1 10.4625 1.7985 -1.6673 18 6 11.9529 3.2893 -1.2819 19 7 12.1785 4.4713 -0.7489 20 14 13.3858 2.2185 -1.8199 21 1 12.8682 0.9463 -2.3850 22 1 14.1769 2.9331 -2.8538 23 1 14.2512 1.9249 -0.6495 24 6 8.3050 3.1795 -0.9224 25 1 8.1941 2.1175 -1.1414 26 6 7.9102 3.5104 0.5224 27 6 8.5198 4.8136 1.0430 28 6 8.0869 2.3397 1.4914 29 6 4.2344 -0.0506 -0.0065 30 6 3.4742 -1.2038 -0.0006 31 7 2.1571 -1.1465 0.0005 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3632 0.8901 0.5139 35 1 1.6494 2.1378 0.0004 36 1 6.1705 1.5651 0.0032 37 1 6.5334 5.9941 -1.9882 38 1 7.5312 5.9379 -0.5150 39 1 8.5214 5.2069 -3.3080 40 1 8.7969 6.7777 -2.5150 41 1 10.7320 5.2262 -2.2190 42 1 9.9801 5.6608 -0.6662 43 1 13.0889 4.7863 -0.6351 44 1 7.8167 5.2984 1.7204 45 1 9.4452 4.5945 1.5756 46 1 8.7316 5.4763 0.2040 47 1 7.5142 1.4834 1.1351 48 1 9.1420 2.0723 1.5496 49 1 7.7305 2.6291 2.4800 50 1 5.3129 -0.1052 -0.0116 51 1 3.9653 -2.1656 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087309802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:18 Heat of formation + Delta-G solvation = 58.123262 kcal Electronic energy + Delta-G solvation = -31233.944956 eV Core-core repulsion = 27328.074642 eV Total energy + Delta-G solvation = -3905.870315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.16853 -40.47243 -38.72157 -35.41258 -33.86189 -33.01741 -32.68066 -32.37427 -30.35189 -29.86854 -27.94189 -26.91399 -25.79212 -25.24037 -23.73577 -23.04262 -22.51065 -21.18822 -20.37493 -19.39887 -18.18195 -17.45230 -16.83829 -16.67843 -15.90703 -15.70544 -15.36544 -15.20413 -14.77231 -14.54198 -14.35917 -14.04055 -13.83390 -13.74799 -13.44833 -13.12828 -12.78733 -12.69095 -12.58614 -12.51526 -12.18856 -12.14389 -11.95420 -11.67092 -11.39558 -11.20093 -11.04891 -10.89269 -10.80521 -10.56831 -10.34075 -10.20719 -10.11911 -10.02882 -9.81273 -9.67133 -9.56745 -9.42905 -9.27314 -9.11655 -8.69539 -8.37478 -6.67447 -5.80178 -3.24267 0.48622 0.78663 2.77011 3.01654 3.33327 3.42124 3.42902 3.58759 3.96285 4.36991 4.42688 4.45754 4.68473 4.74875 4.89866 5.02963 5.09436 5.19519 5.26603 5.28369 5.33756 5.42332 5.44151 5.56644 5.60460 5.67562 5.72535 5.77106 5.78900 5.89625 5.96994 6.07502 6.14554 6.20238 6.26714 6.31874 6.39751 6.42452 6.50141 6.54407 6.59314 6.71911 6.75344 6.79435 6.93295 7.07377 7.17180 7.43101 7.49840 7.63396 7.72227 7.81903 8.12483 8.42481 9.22675 9.86799 10.30799 11.25796 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.002911 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.893487 B = 9615.905452 C =10523.332192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.116 4.116 4 C -0.078 4.078 5 C 0.556 3.444 6 O -0.532 6.532 7 N -0.695 5.695 8 C 0.122 3.878 9 H 0.096 0.904 10 C -0.127 4.127 11 H 0.068 0.932 12 C -0.106 4.106 13 C -0.144 4.144 14 C 0.179 3.821 15 N -0.571 5.571 16 C -0.260 4.260 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.188 3.812 25 H 0.069 0.931 26 C -0.112 4.112 27 C -0.133 4.133 28 C -0.126 4.126 29 C -0.149 4.149 30 C 0.102 3.898 31 N -0.473 5.473 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.400 0.600 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.252 0.748 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.038 0.962 48 H 0.066 0.934 49 H 0.043 0.957 50 H 0.140 0.860 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 -5.869 2.306 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.137 4.137 4 C -0.089 4.089 5 C 0.341 3.659 6 O -0.409 6.409 7 N -0.345 5.345 8 C 0.016 3.984 9 H 0.114 0.886 10 C -0.148 4.148 11 H 0.087 0.913 12 C -0.143 4.143 13 C -0.183 4.183 14 C 0.054 3.946 15 N -0.289 5.289 16 C -0.390 4.390 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.077 3.923 25 H 0.087 0.913 26 C -0.116 4.116 27 C -0.190 4.190 28 C -0.183 4.183 29 C -0.170 4.170 30 C -0.055 4.055 31 N -0.184 5.184 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.238 0.762 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.158 0.842 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.588 -5.755 2.319 18.650 hybrid contribution 1.655 -0.318 -0.217 1.699 sum -15.933 -6.073 2.102 17.181 Atomic orbital electron populations 1.20734 0.88299 1.03715 1.03361 1.21324 0.97331 0.87826 0.95084 1.22125 0.93294 1.00101 0.98196 1.20458 0.94552 0.93693 1.00242 1.18150 0.82442 0.88279 0.76992 1.90768 1.69891 1.30699 1.49538 1.45721 1.05299 1.10259 1.73270 1.22429 0.91919 0.85663 0.98358 0.88586 1.23196 0.98336 0.97278 0.95979 0.91338 1.21522 0.97660 0.93831 1.01315 1.22077 0.97214 0.99692 0.99336 1.20676 0.93546 0.83065 0.97275 1.43416 1.04524 1.04359 1.76629 1.19264 0.85401 0.92224 1.42069 0.91817 1.24984 0.97743 0.97151 0.99311 1.70049 1.19381 1.19332 1.45870 0.86273 0.82876 0.79912 0.77971 1.20411 1.21667 1.21811 1.21402 0.85434 0.95166 0.90261 0.91274 1.23007 0.92244 0.96984 0.99352 1.21997 0.99439 0.95797 1.01762 1.21582 1.02081 0.96649 0.98003 1.22379 1.01711 0.92688 1.00198 1.22733 0.89115 0.98471 0.95139 1.67405 1.10309 1.29475 1.11163 0.90163 0.90266 0.90419 0.83499 0.76212 0.93409 0.90428 0.92916 0.92820 0.91055 0.94265 0.93745 0.94855 0.91957 0.88638 0.94276 0.91495 0.93790 0.84229 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 36.01 0.37 -0.36 16 2 C 0.12 1.24 6.78 -82.63 -0.56 0.68 16 3 C -0.12 -1.29 9.31 -39.02 -0.36 -1.66 16 4 C -0.08 -0.93 5.91 -104.65 -0.62 -1.55 16 5 C 0.56 7.96 7.80 -12.19 -0.10 7.86 16 6 O -0.53 -9.30 16.08 5.35 0.09 -9.21 16 7 N -0.69 -9.44 4.73 -53.64 -0.25 -9.70 16 8 C 0.12 1.91 3.29 -66.88 -0.22 1.69 16 9 H 0.10 1.63 7.41 -51.93 -0.39 1.24 16 10 C -0.13 -2.16 4.08 -89.88 -0.37 -2.53 16 11 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.11 -1.78 5.17 -26.69 -0.14 -1.92 16 13 C -0.14 -2.66 6.04 -26.75 -0.16 -2.82 16 14 C 0.18 4.00 4.00 -4.40 -0.02 3.98 16 15 N -0.57 -13.00 2.65 -166.30 -0.44 -13.44 16 16 C -0.26 -6.62 9.48 -15.06 -0.14 -6.76 16 17 H 0.06 1.62 7.84 -52.49 -0.41 1.20 16 18 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 19 N -0.90 -24.56 10.90 55.49 0.61 -23.96 16 20 Si 0.90 20.90 29.58 -169.99 -5.03 15.87 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.19 3.56 3.45 -67.98 -0.23 3.32 16 25 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 26 C -0.11 -1.90 1.34 -153.85 -0.21 -2.10 16 27 C -0.13 -2.42 7.37 37.16 0.27 -2.15 16 28 C -0.13 -1.95 8.89 37.15 0.33 -1.62 16 29 C -0.15 -1.45 9.62 -39.03 -0.38 -1.82 16 30 C 0.10 0.96 11.17 -17.60 -0.20 0.76 16 31 N -0.47 -5.14 10.25 -9.52 -0.10 -5.23 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.15 1.55 7.74 -52.48 -0.41 1.15 16 36 H 0.40 4.67 4.87 -40.82 -0.20 4.47 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.31 4.76 -51.93 -0.25 1.06 16 39 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.81 6.47 -51.93 -0.34 1.48 16 42 H 0.04 0.93 5.63 -51.93 -0.29 0.64 16 43 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 46 H 0.10 1.84 1.92 -51.93 -0.10 1.74 16 47 H 0.04 0.51 5.95 -51.93 -0.31 0.20 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.14 1.07 6.54 -52.49 -0.34 0.72 16 51 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -29.82 387.12 -9.75 -39.57 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.64 Total: 7.17 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.81 Total: -6.91 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.19 Total: -52.33 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.82 -9.75 -39.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.693 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds