Wall clock time and date at job start Wed Apr 1 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38170 * 119.55288 * 2 1 4 4 C 1.39798 * 118.99815 * 180.22574 * 3 2 1 5 5 C 1.48148 * 120.92278 * 179.75064 * 4 3 2 6 6 O 1.21510 * 119.99726 * 359.72678 * 5 4 3 7 7 N 1.34778 * 120.00106 * 179.72131 * 5 4 3 8 8 C 1.46495 * 120.00298 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.92434 * 26.82554 * 8 7 5 10 10 C 1.54148 * 113.64198 * 255.49959 * 8 7 5 11 11 H 1.09001 * 114.25219 * 104.28906 * 10 8 7 12 12 C 1.53061 * 111.68725 * 333.51159 * 10 8 7 13 13 C 1.53019 * 109.41029 * 213.59588 * 12 10 8 14 14 C 1.52938 * 108.93001 * 64.64588 * 13 12 10 15 15 N 1.45103 * 110.23503 * 303.46447 * 14 13 12 16 16 C 1.36930 * 117.90196 * 218.19120 * 15 14 13 17 17 H 1.08002 * 120.00014 * 151.72727 * 16 15 14 18 18 C 1.38816 * 120.00265 * 331.72201 * 16 15 14 19 19 N 1.31616 * 119.99927 * 344.49619 * 18 16 15 20 20 Si 1.86800 * 120.00240 * 164.49274 * 18 16 15 21 21 H 1.48502 * 109.47059 * 85.19681 * 20 18 16 22 22 H 1.48493 * 109.47211 * 205.19950 * 20 18 16 23 23 H 1.48498 * 109.46851 * 325.19820 * 20 18 16 24 24 C 1.45092 * 123.60525 * 37.55757 * 15 14 13 25 25 H 1.09006 * 112.25165 * 204.84264 * 24 15 14 26 26 C 1.53383 * 113.74363 * 75.20097 * 24 15 14 27 27 C 1.52995 * 113.68931 * 331.26553 * 26 24 15 28 28 C 1.53009 * 113.68452 * 102.39894 * 26 24 15 29 29 C 1.39843 * 118.15556 * 359.48341 * 4 3 2 30 30 C 1.38127 * 118.99882 * 0.27478 * 29 4 3 31 31 N 1.31802 * 119.54678 * 179.70000 * 2 1 3 32 32 H 1.09000 * 109.47339 * 270.30074 * 1 2 3 33 33 H 1.08997 * 109.46736 * 30.30299 * 1 2 3 34 34 H 1.08997 * 109.47174 * 150.29773 * 1 2 3 35 35 H 1.07995 * 120.50149 * 359.97438 * 3 2 1 36 36 H 0.97005 * 119.99833 * 0.02562 * 7 5 4 37 37 H 1.08993 * 109.48358 * 333.57589 * 12 10 8 38 38 H 1.09005 * 109.48552 * 93.60306 * 12 10 8 39 39 H 1.09001 * 109.56225 * 184.48151 * 13 12 10 40 40 H 1.09006 * 109.56308 * 304.80981 * 13 12 10 41 41 H 1.09001 * 109.40493 * 62.78692 * 14 13 12 42 42 H 1.09010 * 109.40002 * 182.52982 * 14 13 12 43 43 H 0.97004 * 120.00425 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.47218 * 91.99512 * 27 26 24 45 45 H 1.08999 * 109.47283 * 211.99110 * 27 26 24 46 46 H 1.09000 * 109.47136 * 331.99722 * 27 26 24 47 47 H 1.09003 * 109.47064 * 60.00012 * 28 26 24 48 48 H 1.09004 * 109.46944 * 179.97438 * 28 26 24 49 49 H 1.08999 * 109.47272 * 299.99677 * 28 26 24 50 50 H 1.07994 * 120.49744 * 180.29124 * 29 4 3 51 51 H 1.08005 * 119.54620 * 180.02562 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1884 -0.0048 5 6 4.3600 2.4519 -0.0105 6 8 3.7797 3.5195 -0.0161 7 7 5.7073 2.4172 -0.0095 8 6 6.4723 3.6665 -0.0157 9 1 5.9296 4.4989 0.4325 10 6 7.0975 4.0017 -1.3842 11 1 6.5804 4.7896 -1.9318 12 6 7.3510 2.7410 -2.2143 13 6 8.6106 2.9345 -3.0613 14 6 9.8170 3.0742 -2.1317 15 7 9.6096 4.1682 -1.2013 16 6 10.6865 4.9521 -0.8837 17 1 10.5385 5.9837 -0.6002 18 6 11.9683 4.4210 -0.9261 19 7 12.1391 3.1166 -0.9677 20 14 13.4508 5.5574 -0.9239 21 1 13.8016 5.9109 0.4751 22 1 14.6014 4.8712 -1.5645 23 1 13.1279 6.7936 -1.6807 24 6 8.3253 4.4814 -0.6034 25 1 8.2537 5.5268 -0.3031 26 6 7.9099 3.5123 0.5107 27 6 8.4783 2.1019 0.3421 28 6 8.1120 4.0730 1.9199 29 6 4.2344 -0.0508 0.0017 30 6 3.4740 -1.2040 0.0067 31 7 2.1570 -1.1466 0.0060 32 1 -0.3634 0.0054 1.0276 33 1 -0.3633 0.8872 -0.5185 34 1 -0.3633 -0.8926 -0.5092 35 1 1.6494 2.1377 -0.0004 36 1 6.1705 1.5649 -0.0053 37 1 7.4881 1.8889 -1.5486 38 1 6.4979 2.5582 -2.8678 39 1 8.7492 2.0710 -3.7119 40 1 8.5092 3.8361 -3.6656 41 1 9.9439 2.1535 -1.5622 42 1 10.7125 3.2574 -2.7257 43 1 13.0348 2.7454 -0.9977 44 1 9.4259 2.0259 0.8753 45 1 7.7740 1.3755 0.7475 46 1 8.6399 1.8995 -0.7167 47 1 7.5175 4.9789 2.0392 48 1 7.7961 3.3322 2.6544 49 1 9.1658 4.3076 2.0700 50 1 5.3129 -0.1054 0.0030 51 1 3.9653 -2.1658 0.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087309804.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:25 Heat of formation + Delta-G solvation = 42.210049 kcal Electronic energy + Delta-G solvation = -31433.723070 eV Core-core repulsion = 27527.162707 eV Total energy + Delta-G solvation = -3906.560363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51457 -41.41833 -39.81768 -36.93973 -34.96769 -34.49472 -33.72083 -33.35197 -32.08192 -31.44827 -28.57779 -28.36454 -27.23075 -26.85185 -25.10585 -23.97001 -23.77854 -22.59231 -21.29144 -20.81939 -19.41347 -18.72298 -18.58628 -17.65362 -16.95377 -16.72101 -16.52001 -16.41972 -16.22789 -16.07062 -15.56103 -15.21505 -15.11016 -14.87300 -14.78698 -14.37694 -14.15765 -14.01402 -13.78593 -13.51076 -13.31824 -13.10378 -13.08568 -12.94086 -12.84451 -12.77870 -12.67167 -12.51473 -12.45508 -12.11311 -11.98444 -11.58060 -11.56549 -11.23634 -11.19186 -10.97975 -10.96159 -10.73729 -10.50178 -10.32301 -9.97369 -9.90975 -8.51164 -7.78637 -5.25256 -0.35173 0.06583 1.45929 1.48926 1.55978 1.79159 2.00099 2.54468 2.79483 3.32898 3.33794 3.44499 3.52650 3.65575 3.73440 3.80050 3.90965 3.94517 4.02981 4.03028 4.26025 4.40382 4.40897 4.48902 4.55365 4.61453 4.65915 4.69619 4.74699 4.79731 4.80410 4.85069 4.93276 4.95233 5.02460 5.06523 5.10917 5.11613 5.16147 5.18407 5.28126 5.29617 5.38851 5.53223 5.57718 5.59658 5.63856 5.72189 5.75398 6.00271 6.44231 6.46473 6.91082 7.06532 7.27520 8.05568 8.38395 9.22810 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002712 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.273713 B =10320.114318 C =10538.874945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.117 3.883 3 C -0.127 4.127 4 C -0.095 4.095 5 C 0.557 3.443 6 O -0.570 6.570 7 N -0.689 5.689 8 C 0.144 3.856 9 H 0.104 0.896 10 C -0.126 4.126 11 H 0.071 0.929 12 C -0.095 4.095 13 C -0.136 4.136 14 C 0.189 3.811 15 N -0.578 5.578 16 C -0.268 4.268 17 H 0.056 0.944 18 C -0.036 4.036 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.171 3.829 25 H 0.065 0.935 26 C -0.105 4.105 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.145 4.145 30 C 0.102 3.898 31 N -0.489 5.489 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.410 0.590 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.247 0.753 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.037 0.963 50 H 0.161 0.839 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -9.134 1.652 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.021 4.021 3 C -0.148 4.148 4 C -0.106 4.106 5 C 0.344 3.656 6 O -0.450 6.450 7 N -0.340 5.340 8 C 0.038 3.962 9 H 0.122 0.878 10 C -0.147 4.147 11 H 0.090 0.910 12 C -0.132 4.132 13 C -0.175 4.175 14 C 0.064 3.936 15 N -0.297 5.297 16 C -0.399 4.399 17 H 0.074 0.926 18 C -0.233 4.233 19 N -0.567 5.567 20 Si 0.782 3.218 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.204 1.204 24 C 0.062 3.938 25 H 0.083 0.917 26 C -0.109 4.109 27 C -0.187 4.187 28 C -0.180 4.180 29 C -0.165 4.165 30 C -0.055 4.055 31 N -0.200 5.200 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.250 0.750 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.057 0.943 50 H 0.178 0.822 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.328 -9.243 1.625 21.486 hybrid contribution 2.220 1.380 0.098 2.616 sum -17.109 -7.863 1.724 18.908 Atomic orbital electron populations 1.20817 0.86423 1.04532 1.04230 1.21717 0.98674 0.87320 0.94343 1.22209 0.93302 1.00519 0.98768 1.20393 0.94772 0.93423 1.02007 1.18512 0.82607 0.88607 0.75867 1.90742 1.70589 1.32251 1.51409 1.45841 1.05088 1.10365 1.72749 1.22535 0.90096 0.86867 0.96655 0.87846 1.23207 0.96868 0.98691 0.95938 0.91023 1.21446 0.96906 0.96833 0.98027 1.21957 0.96328 1.00940 0.98274 1.20268 0.93685 0.90118 0.89523 1.43072 1.04161 1.34148 1.48305 1.19404 0.86460 0.92441 1.41577 0.92633 1.25554 0.99864 0.96461 1.01382 1.70167 1.20834 1.10453 1.55248 0.85529 0.80066 0.78785 0.77413 1.21404 1.22028 1.20420 1.21244 0.84596 0.95967 0.92022 0.91715 1.22861 0.93012 0.98294 0.96686 1.21911 0.99094 0.93764 1.03895 1.21572 1.00675 1.00279 0.95457 1.22586 1.02762 0.91850 0.99280 1.23265 0.88774 0.99623 0.93833 1.67495 1.11192 1.29721 1.11594 0.89138 0.89204 0.89885 0.83720 0.74965 0.89720 0.91856 0.90826 0.93600 0.95670 0.95579 0.94346 0.94793 0.91889 0.89469 0.92454 0.92409 0.94343 0.82189 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.16 71.24 0.72 -0.51 16 2 C 0.12 2.15 6.78 42.55 0.29 2.44 16 3 C -0.13 -2.64 9.31 22.63 0.21 -2.43 16 4 C -0.09 -2.06 5.91 -19.88 -0.12 -2.18 16 5 C 0.56 14.82 7.80 86.88 0.68 15.50 16 6 O -0.57 -19.19 16.09 -3.75 -0.06 -19.25 16 7 N -0.69 -16.84 4.28 -441.92 -1.89 -18.74 16 8 C 0.14 4.22 3.58 45.67 0.16 4.39 16 9 H 0.10 3.24 7.37 -2.39 -0.02 3.22 16 10 C -0.13 -4.07 4.29 -10.32 -0.04 -4.12 16 11 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 12 C -0.09 -2.81 4.65 30.62 0.14 -2.67 16 13 C -0.14 -4.73 6.04 30.58 0.18 -4.54 16 14 C 0.19 8.40 3.97 86.62 0.34 8.75 16 15 N -0.58 -26.71 2.59 -683.78 -1.77 -28.48 16 16 C -0.27 -14.12 9.43 84.04 0.79 -13.32 16 17 H 0.06 2.94 7.85 -2.91 -0.02 2.92 16 18 C -0.04 -1.94 4.84 84.86 0.41 -1.53 16 19 N -0.92 -51.22 11.07 21.65 0.24 -50.98 16 20 Si 0.95 44.10 29.58 68.60 2.03 46.13 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 C 0.17 6.60 3.57 45.45 0.16 6.77 16 25 H 0.06 2.61 7.96 -2.38 -0.02 2.59 16 26 C -0.10 -3.44 1.34 -51.76 -0.07 -3.51 16 27 C -0.13 -4.24 6.84 71.98 0.49 -3.75 16 28 C -0.12 -3.94 9.16 71.99 0.66 -3.28 16 29 C -0.14 -2.36 9.62 22.63 0.22 -2.14 16 30 C 0.10 1.58 11.17 84.67 0.95 2.52 16 31 N -0.49 -9.40 10.25 -184.03 -1.89 -11.29 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.15 2.96 7.74 -2.91 -0.02 2.94 16 36 H 0.41 8.30 3.82 -92.70 -0.35 7.95 16 37 H 0.08 2.32 3.71 -2.39 -0.01 2.31 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.03 1.20 5.55 -2.39 -0.01 1.18 16 42 H 0.03 1.34 6.67 -2.38 -0.02 1.32 16 43 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 44 H 0.03 1.33 8.08 -2.39 -0.02 1.32 16 45 H 0.06 1.55 6.46 -2.39 -0.02 1.53 16 46 H 0.09 3.00 1.98 -2.39 0.00 2.99 16 47 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16 48 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.16 1.82 6.54 -2.91 -0.02 1.80 16 51 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -65.41 384.90 3.44 -61.97 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.60 Total: 24.26 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 6.18 Total: -3.62 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.31 Total: -109.49 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.41 3.44 -61.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309804.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.178 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds