Wall clock time and date at job start Wed Apr 1 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35448 * 125.56356 * 2 1 4 4 C 1.39839 * 107.86267 * 180.02562 * 3 2 1 5 5 C 1.37864 * 107.08728 * 359.97438 * 4 3 2 6 6 C 1.46682 * 126.23602 * 179.97438 * 5 4 3 7 7 O 1.21686 * 120.00164 * 188.26539 * 6 5 4 8 8 N 1.34777 * 119.99720 * 8.27219 * 6 5 4 9 9 C 1.49643 * 127.84891 * 186.91847 * 8 6 5 10 10 C 1.54379 * 104.53508 * 219.52018 * 9 8 6 11 11 H 1.09004 * 111.27165 * 215.52143 * 10 9 8 12 12 C 1.55414 * 104.78021 * 336.32222 * 10 9 8 13 13 H 1.08997 * 110.66597 * 239.26247 * 12 10 9 14 14 C 1.48149 * 127.83742 * 6.72929 * 8 6 5 15 15 C 1.53272 * 109.50796 * 116.64924 * 12 10 9 16 16 H 1.08997 * 110.93066 * 181.83998 * 15 12 10 17 17 C 1.53315 * 108.75466 * 60.13193 * 15 12 10 18 18 C 1.52940 * 109.58932 * 299.32850 * 17 15 12 19 19 C 1.52979 * 109.08172 * 93.04245 * 10 9 8 20 20 H 1.09003 * 109.63404 * 66.07202 * 19 10 9 21 21 C 1.53609 * 109.79749 * 305.56924 * 19 10 9 22 22 N 1.47637 * 106.73789 * 300.22903 * 21 19 10 23 23 C 1.36936 * 122.06662 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00011 * 174.95488 * 23 22 21 25 25 C 1.38807 * 120.00217 * 354.95005 * 23 22 21 26 26 N 1.31615 * 120.00248 * 214.21137 * 25 23 22 27 27 Si 1.86807 * 119.99801 * 34.21396 * 25 23 22 28 28 H 1.48492 * 109.47009 * 174.30769 * 27 25 23 29 29 H 1.48491 * 109.47062 * 54.30001 * 27 25 23 30 30 H 1.48507 * 109.46589 * 294.30088 * 27 25 23 31 31 N 1.35539 * 125.56264 * 180.36000 * 2 1 3 32 32 C 1.46501 * 125.67947 * 359.97438 * 31 2 1 33 33 H 1.08996 * 109.46889 * 89.97440 * 1 2 3 34 34 H 1.09007 * 109.46713 * 209.97207 * 1 2 3 35 35 H 1.08999 * 109.46864 * 329.96748 * 1 2 3 36 36 H 1.07997 * 126.07361 * 0.07395 * 3 2 1 37 37 H 1.08002 * 126.45709 * 180.02562 * 4 3 2 38 38 H 1.09006 * 111.07468 * 100.44370 * 9 8 6 39 39 H 1.08997 * 109.81292 * 337.96506 * 9 8 6 40 40 H 1.08994 * 110.41625 * 21.65515 * 14 8 6 41 41 H 1.08999 * 110.41439 * 259.20695 * 14 8 6 42 42 H 1.09005 * 109.44994 * 59.35901 * 17 15 12 43 43 H 1.09001 * 109.45251 * 179.31809 * 17 15 12 44 44 H 1.08997 * 109.38120 * 120.86297 * 18 17 15 45 45 H 1.08999 * 109.37753 * 240.53701 * 18 17 15 46 46 H 1.08994 * 110.12605 * 180.84594 * 21 19 10 47 47 H 1.09004 * 109.86653 * 59.46659 * 21 19 10 48 48 H 0.97004 * 120.00319 * 4.96130 * 26 25 23 49 49 H 1.08998 * 109.47350 * 274.90637 * 32 31 2 50 50 H 1.09004 * 109.46977 * 34.90234 * 32 31 2 51 51 H 1.08996 * 109.47153 * 154.90364 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7860 -1.5816 -0.0013 7 8 4.6473 -2.7810 -0.1525 8 7 6.0181 -1.0614 0.1654 9 6 7.3344 -1.7642 0.0534 10 6 8.1867 -1.1754 1.1980 11 1 9.2329 -1.0846 0.9057 12 6 7.5512 0.2121 1.4920 13 1 8.2825 1.0079 1.3503 14 6 6.3767 0.3372 0.4973 15 6 6.9943 0.2278 2.9199 16 1 6.5136 1.1810 3.1399 17 6 8.1439 -0.0324 3.9003 18 6 8.7605 -1.4028 3.6155 19 6 8.0447 -2.0637 2.4353 20 1 8.4879 -3.0398 2.2382 21 6 6.5589 -2.2330 2.7865 22 7 6.0266 -0.8806 3.0464 23 6 4.7181 -0.6679 3.3895 24 1 4.3832 0.3249 3.6516 25 6 3.8222 -1.7280 3.4003 26 7 2.5662 -1.5317 3.0596 27 14 4.3993 -3.4334 3.8986 28 1 3.2340 -4.3517 3.9609 29 1 5.0487 -3.3662 5.2323 30 1 5.3740 -3.9380 2.8982 31 7 2.2953 -1.1026 -0.0069 32 6 1.8242 -2.4897 -0.0151 33 1 -0.3633 0.0005 -1.0276 34 1 -0.3633 -0.8903 0.5134 35 1 -0.3633 0.8897 0.5143 36 1 1.9546 2.1268 0.0011 37 1 4.5025 1.3091 -0.0004 38 1 7.8036 -1.5665 -0.9104 39 1 7.1944 -2.8357 0.1963 40 1 5.5339 0.8448 0.9663 41 1 6.6927 0.8716 -0.3987 42 1 8.9042 0.7395 3.7813 43 1 7.7621 -0.0117 4.9211 44 1 9.8168 -1.2813 3.3758 45 1 8.6617 -2.0343 4.4983 46 1 6.4522 -2.8531 3.6765 47 1 6.0297 -2.6873 1.9488 48 1 2.2823 -0.6639 2.7322 49 1 1.6245 -2.8117 1.0069 50 1 0.9091 -2.5592 -0.6032 51 1 2.5884 -3.1304 -0.4551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087333995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:38 Heat of formation + Delta-G solvation = 81.752456 kcal Electronic energy + Delta-G solvation = -34429.681974 eV Core-core repulsion = 30524.836299 eV Total energy + Delta-G solvation = -3904.845676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.95143 -40.26519 -37.74239 -35.35447 -33.34842 -32.20936 -31.73100 -31.13273 -30.48340 -30.00404 -27.37887 -26.06805 -25.58622 -24.95683 -23.74643 -22.36629 -21.13889 -20.60498 -20.36172 -19.42905 -18.32113 -17.55778 -16.57012 -16.35349 -16.04497 -15.51678 -15.14093 -14.81540 -14.73397 -14.30114 -13.61445 -13.47492 -13.10694 -13.00562 -12.93488 -12.59549 -12.54211 -12.35504 -12.21501 -12.17614 -12.02801 -11.87149 -11.80156 -11.44761 -11.40677 -11.28924 -11.18349 -11.07507 -10.99137 -10.75463 -10.42488 -10.21227 -9.91182 -9.70328 -9.52367 -9.33948 -9.10480 -8.66466 -8.11062 -8.02105 -7.83694 -7.16757 -6.86652 -6.13653 -2.87337 2.37579 3.23842 3.47354 3.61685 3.65933 3.82405 4.00244 4.31774 4.80536 4.83933 4.88256 5.08070 5.12871 5.37563 5.47767 5.51523 5.52414 5.55331 5.59631 5.66985 5.68690 5.71458 5.72893 5.74986 5.90347 5.91189 5.99588 6.07956 6.14557 6.16360 6.19484 6.21405 6.24199 6.28863 6.30604 6.38648 6.45322 6.48738 6.55672 6.58285 6.70295 6.74238 6.82368 6.88455 6.92092 7.02716 7.12625 7.62678 7.85152 8.00936 8.05490 8.29167 8.58017 8.98905 9.26370 9.85037 10.42675 11.33307 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.006382 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.952894 B = 4386.389719 C = 5018.963130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.039 3.961 3 C -0.215 4.215 4 C -0.157 4.157 5 C -0.002 4.002 6 C 0.633 3.367 7 O -0.565 6.565 8 N -0.594 5.594 9 C 0.114 3.886 10 C -0.085 4.085 11 H 0.080 0.920 12 C -0.112 4.112 13 H 0.077 0.923 14 C 0.108 3.892 15 C 0.182 3.818 16 H 0.071 0.929 17 C -0.133 4.133 18 C -0.103 4.103 19 C -0.095 4.095 20 H 0.065 0.935 21 C 0.139 3.861 22 N -0.591 5.591 23 C -0.338 4.338 24 H 0.072 0.928 25 C 0.008 3.992 26 N -0.897 5.897 27 Si 1.016 2.984 28 H -0.309 1.309 29 H -0.308 1.308 30 H -0.278 1.278 31 N -0.379 5.379 32 C 0.064 3.936 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.267 0.733 49 H 0.095 0.905 50 H 0.062 0.938 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.326 4.738 -7.246 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.239 4.239 4 C -0.183 4.183 5 C -0.117 4.117 6 C 0.425 3.575 7 O -0.446 6.446 8 N -0.326 5.326 9 C -0.008 4.008 10 C -0.104 4.104 11 H 0.098 0.902 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.015 4.015 15 C 0.073 3.927 16 H 0.089 0.911 17 C -0.172 4.172 18 C -0.140 4.140 19 C -0.114 4.114 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.315 5.315 23 C -0.464 4.464 24 H 0.090 0.910 25 C -0.195 4.195 26 N -0.536 5.536 27 Si 0.851 3.149 28 H -0.237 1.237 29 H -0.238 1.238 30 H -0.205 1.205 31 N -0.050 5.050 32 C -0.078 4.078 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.081 0.919 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.429 2.107 -7.057 9.150 hybrid contribution 0.773 1.403 0.354 1.640 sum 6.203 3.510 -6.703 9.784 Atomic orbital electron populations 1.20251 0.88936 1.03191 1.01383 1.20189 0.93097 0.86064 1.08486 1.20340 0.92809 0.96862 1.13889 1.21428 0.97200 0.92473 1.07173 1.19437 0.83828 0.92879 1.15525 1.16294 0.80662 0.85874 0.74652 1.90678 1.85310 1.15434 1.53216 1.48376 1.03861 1.10990 1.69369 1.22491 0.82887 0.98318 0.97139 1.22196 0.97990 0.95572 0.94628 0.90168 1.22971 0.96165 0.95912 0.98273 0.90508 1.22653 0.98682 0.83817 0.96386 1.20573 0.89279 0.92420 0.90432 0.91073 1.22097 0.98354 0.95977 1.00802 1.21371 0.97882 0.97102 0.97693 1.21464 0.97702 0.97644 0.94604 0.91674 1.21886 0.90878 0.88078 0.97711 1.44772 1.06900 0.99163 1.80674 1.19932 0.82826 0.96368 1.47316 0.91018 1.25071 0.94226 1.00905 0.99343 1.70761 1.18320 1.24873 1.39611 0.84782 0.74155 0.79331 0.76635 1.23718 1.23778 1.20472 1.43377 1.04367 1.06084 1.51209 1.22265 1.00175 0.80378 1.04961 0.92006 0.91678 0.90645 0.85474 0.84195 0.91839 0.90377 0.87732 0.92877 0.93165 0.92306 0.93059 0.92790 0.96751 0.92357 0.92314 0.88627 0.91904 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.89 36.01 0.36 -0.82 16 2 C 0.04 0.74 6.87 -81.95 -0.56 0.17 16 3 C -0.21 -3.96 10.71 -39.98 -0.43 -4.38 16 4 C -0.16 -3.07 9.20 -39.12 -0.36 -3.43 16 5 C 0.00 -0.05 6.83 -81.98 -0.56 -0.60 16 6 C 0.63 14.19 6.98 -12.85 -0.09 14.10 16 7 O -0.57 -14.08 14.33 5.20 0.07 -14.01 16 8 N -0.59 -11.35 1.99 -169.57 -0.34 -11.69 16 9 C 0.11 1.88 5.92 -1.57 -0.01 1.87 16 10 C -0.08 -1.26 3.26 -88.63 -0.29 -1.55 16 11 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 12 C -0.11 -1.70 3.20 -88.45 -0.28 -1.98 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 14 C 0.11 1.76 4.73 -2.39 -0.01 1.75 16 15 C 0.18 3.30 2.88 -66.98 -0.19 3.10 16 16 H 0.07 1.33 8.00 -51.93 -0.42 0.92 16 17 C -0.13 -2.15 5.85 -26.60 -0.16 -2.30 16 18 C -0.10 -1.61 5.64 -26.74 -0.15 -1.76 16 19 C -0.10 -1.64 2.66 -90.30 -0.24 -1.88 16 20 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 21 C 0.14 3.10 2.79 -3.10 -0.01 3.09 16 22 N -0.59 -13.27 2.01 -163.15 -0.33 -13.60 16 23 C -0.34 -8.93 10.12 -15.06 -0.15 -9.08 16 24 H 0.07 2.06 8.03 -52.49 -0.42 1.64 16 25 C 0.01 0.21 5.40 -17.43 -0.09 0.12 16 26 N -0.90 -25.70 13.05 55.49 0.72 -24.97 16 27 Si 1.02 27.23 24.86 -169.99 -4.23 23.01 16 28 H -0.31 -8.61 7.11 56.52 0.40 -8.20 16 29 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 30 H -0.28 -7.25 4.91 56.52 0.28 -6.98 16 31 N -0.38 -7.90 3.16 -115.62 -0.37 -8.26 16 32 C 0.06 1.26 10.30 59.85 0.62 1.88 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.98 7.77 -51.92 -0.40 0.57 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.14 2.45 5.04 -52.49 -0.26 2.18 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.43 6.98 -51.93 -0.36 1.07 16 40 H 0.10 1.94 4.66 -51.93 -0.24 1.70 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.02 0.37 4.41 -51.93 -0.23 0.14 16 47 H 0.06 1.47 3.36 -51.93 -0.17 1.30 16 48 H 0.27 7.74 8.73 -40.82 -0.36 7.39 16 49 H 0.10 2.16 7.48 -51.93 -0.39 1.77 16 50 H 0.06 1.00 7.83 -51.93 -0.41 0.59 16 51 H 0.10 2.03 5.94 -51.93 -0.31 1.72 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -31.68 367.63 -9.50 -41.18 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.97 Total: 4.52 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.62 Total: -1.70 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.31 Total: -58.53 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.07 Total: -14.01 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.23 Total: 23.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.68 -9.50 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087333995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.930 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds