Wall clock time and date at job start Wed Apr 1 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35457 * 125.56483 * 2 1 4 4 C 1.39835 * 107.86522 * 180.02562 * 3 2 1 5 5 C 1.37873 * 107.08668 * 359.97438 * 4 3 2 6 6 C 1.46675 * 126.23249 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00153 * 171.73429 * 6 5 4 8 8 N 1.34780 * 120.00395 * 351.73289 * 6 5 4 9 9 C 1.48148 * 127.83097 * 353.26824 * 8 6 5 10 10 C 1.54366 * 104.61911 * 219.45062 * 9 8 6 11 11 H 1.09000 * 110.91921 * 216.49130 * 10 9 8 12 12 C 1.54159 * 105.04606 * 336.39188 * 10 9 8 13 13 H 1.09004 * 110.87267 * 239.93839 * 12 10 9 14 14 C 1.48151 * 127.83854 * 173.26766 * 8 6 5 15 15 C 1.53016 * 109.73574 * 117.18969 * 12 10 9 16 16 H 1.08993 * 109.64526 * 180.44227 * 15 12 10 17 17 C 1.53072 * 109.15425 * 300.56823 * 15 12 10 18 18 C 1.52912 * 110.00477 * 59.24258 * 17 15 12 19 19 C 1.52123 * 109.79393 * 0.55798 * 18 17 15 20 20 H 1.08997 * 110.66254 * 177.80306 * 19 18 17 21 21 N 1.47654 * 107.15454 * 56.66820 * 19 18 17 22 22 C 1.36930 * 122.04455 * 120.86567 * 21 19 18 23 23 H 1.08009 * 119.99571 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00413 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99958 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47144 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46851 * 119.99839 * 26 24 22 29 29 H 1.48505 * 109.47030 * 239.99615 * 26 24 22 30 30 C 1.47677 * 116.39788 * 299.89977 * 21 19 18 31 31 N 1.35543 * 125.56613 * 180.30983 * 2 1 3 32 32 C 1.46498 * 125.67834 * 359.97438 * 31 2 1 33 33 H 1.08997 * 109.47412 * 89.97875 * 1 2 3 34 34 H 1.09004 * 109.46983 * 209.97780 * 1 2 3 35 35 H 1.08993 * 109.47243 * 329.97683 * 1 2 3 36 36 H 1.08000 * 126.06673 * 0.04641 * 3 2 1 37 37 H 1.08008 * 126.45617 * 179.97438 * 4 3 2 38 38 H 1.08991 * 110.40740 * 100.66790 * 9 8 6 39 39 H 1.09001 * 110.41023 * 338.23551 * 9 8 6 40 40 H 1.08992 * 110.41208 * 21.57961 * 14 8 6 41 41 H 1.08999 * 110.50984 * 259.18299 * 14 8 6 42 42 H 1.09004 * 109.38205 * 179.41045 * 17 15 12 43 43 H 1.09010 * 109.38153 * 299.18304 * 17 15 12 44 44 H 1.09003 * 109.44729 * 120.89613 * 18 17 15 45 45 H 1.09004 * 109.44291 * 240.83159 * 18 17 15 46 46 H 0.96998 * 119.99707 * 179.97438 * 25 24 22 47 47 H 1.09004 * 110.95706 * 242.03160 * 30 21 19 48 48 H 1.09002 * 109.51547 * 120.34038 * 30 21 19 49 49 H 1.08992 * 109.47428 * 264.82670 * 32 31 2 50 50 H 1.09003 * 109.46829 * 24.82273 * 32 31 2 51 51 H 1.08994 * 109.47123 * 144.81642 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7859 -1.5814 -0.0013 7 8 4.6476 -2.7810 0.1505 8 7 6.0178 -1.0613 -0.1704 9 6 6.3757 0.3372 -0.5034 10 6 7.5501 0.2126 -1.4975 11 1 8.2799 1.0066 -1.3393 12 6 8.1703 -1.1697 -1.2131 13 1 9.2140 -1.0729 -0.9139 14 6 7.3209 -1.7583 -0.0654 15 6 8.0396 -2.0594 -2.4511 16 1 8.4715 -3.0388 -2.2458 17 6 6.5583 -2.2140 -2.8044 18 6 5.9400 -0.8426 -3.0788 19 6 6.9985 0.2394 -2.9268 20 1 6.5820 1.2199 -3.1573 21 7 8.1010 -0.0972 -3.8495 22 6 8.5001 0.7535 -4.8454 23 1 8.0039 1.7042 -4.9747 24 6 9.5417 0.3938 -5.6896 25 7 10.1460 -0.7648 -5.5324 26 14 10.0857 1.5542 -7.0487 27 1 9.2517 2.7824 -7.0143 28 1 11.5114 1.9176 -6.8481 29 1 9.9259 0.8847 -8.3646 30 6 8.7691 -1.3954 -3.6283 31 7 2.2953 -1.1026 -0.0060 32 6 1.8243 -2.4897 -0.0129 33 1 -0.3634 0.0004 -1.0276 34 1 -0.3633 -0.8902 0.5135 35 1 -0.3633 0.8897 0.5142 36 1 1.9544 2.1269 0.0007 37 1 4.5024 1.3092 -0.0011 38 1 6.6911 0.8723 0.3922 39 1 5.5325 0.8439 -0.9728 40 1 7.1898 -2.8317 -0.2013 41 1 7.7878 -1.5520 0.8976 42 1 6.4614 -2.8388 -3.6923 43 1 6.0351 -2.6850 -1.9720 44 1 5.5387 -0.8217 -4.0921 45 1 5.1361 -0.6579 -2.3662 46 1 10.8736 -1.0163 -6.1225 47 1 9.8220 -1.2553 -3.3831 48 1 8.6723 -2.0118 -4.5221 49 1 1.7955 -2.8688 1.0085 50 1 0.8241 -2.5316 -0.4442 51 1 2.5025 -3.1007 -0.6084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087333997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:47 Heat of formation + Delta-G solvation = 66.326642 kcal Electronic energy + Delta-G solvation = -32470.738175 eV Core-core repulsion = 28565.223585 eV Total energy + Delta-G solvation = -3905.514589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65904 -40.67717 -38.24147 -35.72955 -33.33031 -32.77405 -32.05599 -31.55002 -30.52003 -29.65555 -27.83429 -26.70584 -26.27893 -25.25859 -23.86981 -21.86490 -21.59981 -20.81150 -20.67607 -19.97034 -19.07029 -17.44290 -16.73499 -16.61366 -16.34987 -15.73051 -15.59392 -14.97154 -14.64976 -14.45548 -14.17011 -13.81104 -13.59546 -13.49273 -13.34858 -13.09343 -12.99001 -12.77995 -12.35680 -12.23879 -12.17197 -12.05126 -12.03142 -11.87777 -11.67795 -11.41392 -11.27579 -11.02611 -10.92785 -10.80146 -10.53162 -10.41906 -10.09844 -9.89630 -9.71835 -9.57780 -9.23715 -9.12747 -8.78005 -8.50418 -8.43998 -8.03732 -6.80063 -5.61075 -2.98293 1.49193 2.52118 2.65813 3.31386 3.41597 3.47538 3.47699 3.49724 4.51118 4.53855 4.67937 4.68874 4.90587 4.94159 5.08672 5.12076 5.20828 5.27962 5.34566 5.43771 5.46155 5.48189 5.49525 5.56206 5.61701 5.67399 5.72899 5.76469 5.82139 5.88643 5.99076 6.07784 6.14539 6.15420 6.18966 6.25785 6.36463 6.37801 6.52558 6.60001 6.79157 6.81686 6.86342 6.94783 6.96883 7.06047 7.12564 7.15650 7.68883 7.70581 7.77432 7.97234 8.28478 8.36951 9.30718 9.92090 10.45787 11.43265 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003429 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.021702 B = 8163.936089 C = 8861.739048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.036 3.964 3 C -0.206 4.206 4 C -0.148 4.148 5 C -0.042 4.042 6 C 0.610 3.390 7 O -0.559 6.559 8 N -0.599 5.599 9 C 0.089 3.911 10 C -0.108 4.108 11 H 0.086 0.914 12 C -0.081 4.081 13 H 0.082 0.918 14 C 0.113 3.887 15 C -0.110 4.110 16 H 0.061 0.939 17 C -0.101 4.101 18 C -0.123 4.123 19 C 0.183 3.817 20 H 0.066 0.934 21 N -0.602 5.602 22 C -0.232 4.232 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.923 5.923 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.206 3.794 31 N -0.409 5.409 32 C 0.071 3.929 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.249 0.751 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 0.699 13.919 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.230 4.230 4 C -0.174 4.174 5 C -0.155 4.155 6 C 0.401 3.599 7 O -0.440 6.440 8 N -0.331 5.331 9 C -0.033 4.033 10 C -0.129 4.129 11 H 0.105 0.895 12 C -0.101 4.101 13 H 0.101 0.899 14 C -0.009 4.009 15 C -0.129 4.129 16 H 0.080 0.920 17 C -0.138 4.138 18 C -0.162 4.162 19 C 0.075 3.925 20 H 0.084 0.916 21 N -0.326 5.326 22 C -0.361 4.361 23 H 0.092 0.908 24 C -0.205 4.205 25 N -0.572 5.572 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 C 0.082 3.918 31 N -0.083 5.083 32 C -0.070 4.070 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.173 0.827 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.316 -0.423 13.854 20.656 hybrid contribution 0.433 0.576 -0.780 1.062 sum -14.883 0.153 13.074 19.810 Atomic orbital electron populations 1.20363 0.87956 1.03247 1.02799 1.20527 0.93640 0.85903 1.08003 1.20635 0.92577 0.97651 1.12137 1.21861 0.98138 0.92338 1.05083 1.19941 0.84034 0.93596 1.17969 1.16392 0.80909 0.86126 0.76508 1.90770 1.85560 1.15049 1.52622 1.48440 1.04465 1.11878 1.68288 1.23020 0.99181 0.82806 0.98339 1.22754 0.95993 0.97304 0.96854 0.89546 1.22000 0.98437 0.95231 0.94407 0.89932 1.22472 0.81873 0.98311 0.98270 1.21847 0.96460 0.97927 0.96635 0.92037 1.21369 0.95630 0.96971 0.99854 1.21804 0.97989 0.96365 1.00041 1.20323 0.88736 0.95784 0.87679 0.91628 1.44679 1.35964 1.18472 1.33456 1.19342 1.12724 0.98185 1.05855 0.90807 1.24776 0.98866 0.97288 0.99593 1.70057 1.26202 1.20849 1.40050 0.86110 0.78157 0.79895 0.81997 1.20634 1.21928 1.21967 1.21102 0.93471 0.85007 0.92204 1.43712 1.04640 1.06469 1.53463 1.22138 1.01081 0.79811 1.03962 0.90813 0.91790 0.89923 0.84147 0.82681 0.91324 0.88718 0.90014 0.91610 0.93355 0.93079 0.92884 0.93710 0.94026 0.93556 0.92935 0.90693 0.90118 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.81 36.00 0.35 -0.26 16 2 C 0.04 0.39 6.87 -81.95 -0.56 -0.17 16 3 C -0.21 -2.34 10.71 -39.98 -0.43 -2.77 16 4 C -0.15 -1.89 9.20 -39.12 -0.36 -2.25 16 5 C -0.04 -0.61 6.63 -81.98 -0.54 -1.16 16 6 C 0.61 9.80 5.98 -12.85 -0.08 9.73 16 7 O -0.56 -10.22 14.74 5.19 0.08 -10.14 16 8 N -0.60 -8.84 1.74 -170.83 -0.30 -9.14 16 9 C 0.09 1.19 4.35 -2.42 -0.01 1.18 16 10 C -0.11 -1.75 3.37 -89.19 -0.30 -2.05 16 11 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 12 C -0.08 -1.33 3.14 -89.25 -0.28 -1.61 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.11 1.64 5.84 -2.38 -0.01 1.63 16 15 C -0.11 -2.09 2.73 -90.27 -0.25 -2.33 16 16 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.10 -1.92 5.08 -26.74 -0.14 -2.05 16 18 C -0.12 -2.32 5.24 -27.22 -0.14 -2.46 16 19 C 0.18 3.57 2.99 -67.63 -0.20 3.37 16 20 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 21 N -0.60 -14.55 2.84 -163.87 -0.47 -15.01 16 22 C -0.23 -6.24 9.99 -15.06 -0.15 -6.39 16 23 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 24 C -0.01 -0.27 5.47 -17.43 -0.10 -0.37 16 25 N -0.92 -26.58 9.71 55.49 0.54 -26.04 16 26 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 C 0.21 4.92 4.36 -3.10 -0.01 4.90 16 31 N -0.41 -5.22 3.16 -115.63 -0.37 -5.58 16 32 C 0.07 0.75 10.02 59.85 0.60 1.35 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.39 7.54 -51.93 -0.39 -0.01 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.16 1.74 5.05 -52.48 -0.26 1.48 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.23 4.10 -51.93 -0.21 1.01 16 40 H 0.08 1.28 7.02 -51.93 -0.36 0.92 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.96 5.07 -51.92 -0.26 0.70 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.79 5.06 -51.93 -0.26 0.53 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.05 1.22 7.30 -51.93 -0.38 0.84 16 48 H 0.05 1.43 7.12 -51.93 -0.37 1.06 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.61 7.34 -51.93 -0.38 0.23 16 51 H 0.10 1.21 6.85 -51.93 -0.36 0.85 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -31.96 370.91 -10.41 -42.38 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.86 Total: 2.76 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.61 Total: -1.71 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.59 Total: -55.78 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.96 -10.41 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087333997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.703 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds