Wall clock time and date at job start Wed Apr 1 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35457 * 125.56483 * 2 1 4 4 C 1.39835 * 107.86522 * 180.02562 * 3 2 1 5 5 C 1.37873 * 107.08668 * 359.97438 * 4 3 2 6 6 C 1.46675 * 126.23249 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00153 * 171.73429 * 6 5 4 8 8 N 1.34780 * 120.00395 * 351.73289 * 6 5 4 9 9 C 1.48148 * 127.83097 * 353.26824 * 8 6 5 10 10 C 1.54366 * 104.61911 * 219.45062 * 9 8 6 11 11 H 1.09000 * 110.91921 * 216.49130 * 10 9 8 12 12 C 1.54159 * 105.04606 * 336.39188 * 10 9 8 13 13 H 1.09004 * 110.87267 * 239.93839 * 12 10 9 14 14 C 1.48151 * 127.83854 * 173.26766 * 8 6 5 15 15 C 1.53016 * 109.73574 * 117.18969 * 12 10 9 16 16 H 1.08993 * 109.64526 * 180.44227 * 15 12 10 17 17 C 1.53072 * 109.15425 * 300.56823 * 15 12 10 18 18 C 1.52912 * 110.00477 * 59.24258 * 17 15 12 19 19 C 1.52123 * 109.79393 * 0.55798 * 18 17 15 20 20 H 1.08997 * 110.66254 * 177.80306 * 19 18 17 21 21 N 1.47654 * 107.15454 * 56.66820 * 19 18 17 22 22 C 1.36930 * 122.04455 * 120.86567 * 21 19 18 23 23 H 1.08009 * 119.99571 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00413 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99958 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47144 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46851 * 119.99839 * 26 24 22 29 29 H 1.48505 * 109.47030 * 239.99615 * 26 24 22 30 30 C 1.47677 * 116.39788 * 299.89977 * 21 19 18 31 31 N 1.35543 * 125.56613 * 180.30983 * 2 1 3 32 32 C 1.46498 * 125.67834 * 359.97438 * 31 2 1 33 33 H 1.08997 * 109.47412 * 89.97875 * 1 2 3 34 34 H 1.09004 * 109.46983 * 209.97780 * 1 2 3 35 35 H 1.08993 * 109.47243 * 329.97683 * 1 2 3 36 36 H 1.08000 * 126.06673 * 0.04641 * 3 2 1 37 37 H 1.08008 * 126.45617 * 179.97438 * 4 3 2 38 38 H 1.08991 * 110.40740 * 100.66790 * 9 8 6 39 39 H 1.09001 * 110.41023 * 338.23551 * 9 8 6 40 40 H 1.08992 * 110.41208 * 21.57961 * 14 8 6 41 41 H 1.08999 * 110.50984 * 259.18299 * 14 8 6 42 42 H 1.09004 * 109.38205 * 179.41045 * 17 15 12 43 43 H 1.09010 * 109.38153 * 299.18304 * 17 15 12 44 44 H 1.09003 * 109.44729 * 120.89613 * 18 17 15 45 45 H 1.09004 * 109.44291 * 240.83159 * 18 17 15 46 46 H 0.96998 * 119.99707 * 179.97438 * 25 24 22 47 47 H 1.09004 * 110.95706 * 242.03160 * 30 21 19 48 48 H 1.09002 * 109.51547 * 120.34038 * 30 21 19 49 49 H 1.08992 * 109.47428 * 264.82670 * 32 31 2 50 50 H 1.09003 * 109.46829 * 24.82273 * 32 31 2 51 51 H 1.08994 * 109.47123 * 144.81642 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7859 -1.5814 -0.0013 7 8 4.6476 -2.7810 0.1505 8 7 6.0178 -1.0613 -0.1704 9 6 6.3757 0.3372 -0.5034 10 6 7.5501 0.2126 -1.4975 11 1 8.2799 1.0066 -1.3393 12 6 8.1703 -1.1697 -1.2131 13 1 9.2140 -1.0729 -0.9139 14 6 7.3209 -1.7583 -0.0654 15 6 8.0396 -2.0594 -2.4511 16 1 8.4715 -3.0388 -2.2458 17 6 6.5583 -2.2140 -2.8044 18 6 5.9400 -0.8426 -3.0788 19 6 6.9985 0.2394 -2.9268 20 1 6.5820 1.2199 -3.1573 21 7 8.1010 -0.0972 -3.8495 22 6 8.5001 0.7535 -4.8454 23 1 8.0039 1.7042 -4.9747 24 6 9.5417 0.3938 -5.6896 25 7 10.1460 -0.7648 -5.5324 26 14 10.0857 1.5542 -7.0487 27 1 9.2517 2.7824 -7.0143 28 1 11.5114 1.9176 -6.8481 29 1 9.9259 0.8847 -8.3646 30 6 8.7691 -1.3954 -3.6283 31 7 2.2953 -1.1026 -0.0060 32 6 1.8243 -2.4897 -0.0129 33 1 -0.3634 0.0004 -1.0276 34 1 -0.3633 -0.8902 0.5135 35 1 -0.3633 0.8897 0.5142 36 1 1.9544 2.1269 0.0007 37 1 4.5024 1.3092 -0.0011 38 1 6.6911 0.8723 0.3922 39 1 5.5325 0.8439 -0.9728 40 1 7.1898 -2.8317 -0.2013 41 1 7.7878 -1.5520 0.8976 42 1 6.4614 -2.8388 -3.6923 43 1 6.0351 -2.6850 -1.9720 44 1 5.5387 -0.8217 -4.0921 45 1 5.1361 -0.6579 -2.3662 46 1 10.8736 -1.0163 -6.1225 47 1 9.8220 -1.2553 -3.3831 48 1 8.6723 -2.0118 -4.5221 49 1 1.7955 -2.8688 1.0085 50 1 0.8241 -2.5316 -0.4442 51 1 2.5025 -3.1007 -0.6084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087333997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:45 Heat of formation + Delta-G solvation = 49.538682 kcal Electronic energy + Delta-G solvation = -32471.466155 eV Core-core repulsion = 28565.223585 eV Total energy + Delta-G solvation = -3906.242570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.72121 -41.91645 -39.52531 -37.18991 -34.95654 -33.90150 -33.32103 -32.66520 -31.79370 -31.51535 -29.15042 -27.63206 -27.28939 -26.94259 -25.19379 -23.66170 -22.90179 -22.24925 -21.90399 -21.00833 -20.00510 -19.18424 -18.08580 -17.91556 -17.68199 -16.97686 -16.68869 -16.52173 -16.06996 -15.89455 -15.65062 -15.24593 -14.75079 -14.47192 -14.22188 -14.13047 -14.06927 -13.95595 -13.79776 -13.63069 -13.38201 -13.32133 -13.04910 -12.94892 -12.86539 -12.81645 -12.78656 -12.66108 -12.57893 -12.42172 -12.09790 -12.01662 -11.97135 -11.73103 -11.16163 -10.98555 -10.87691 -10.74480 -10.47972 -9.73059 -9.61926 -8.94323 -8.80454 -7.70738 -5.09624 0.50471 1.47861 1.48645 1.57839 1.58342 1.79785 2.30790 2.39791 2.53839 3.38487 3.43030 3.53868 3.75181 3.83268 3.87694 3.93997 3.98796 4.16232 4.24019 4.28710 4.31492 4.33687 4.37596 4.41403 4.52623 4.61440 4.63860 4.68193 4.69158 4.77164 4.81240 4.82655 4.86717 4.91675 4.98728 4.99989 5.08388 5.12383 5.18204 5.24104 5.28155 5.30372 5.45791 5.48869 5.58692 5.62848 5.79034 5.92966 5.94553 6.06244 6.31578 6.34525 6.56315 7.13147 7.21718 7.92553 8.43084 9.31589 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003429 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.021702 B = 8163.936089 C = 8861.739048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.043 3.957 3 C -0.221 4.221 4 C -0.144 4.144 5 C -0.083 4.083 6 C 0.605 3.395 7 O -0.592 6.592 8 N -0.601 5.601 9 C 0.099 3.901 10 C -0.102 4.102 11 H 0.092 0.908 12 C -0.078 4.078 13 H 0.090 0.910 14 C 0.120 3.880 15 C -0.103 4.103 16 H 0.067 0.933 17 C -0.092 4.092 18 C -0.112 4.112 19 C 0.177 3.823 20 H 0.071 0.929 21 N -0.617 5.617 22 C -0.237 4.237 23 H 0.081 0.919 24 C -0.069 4.069 25 N -0.952 5.952 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.295 1.295 29 H -0.300 1.300 30 C 0.222 3.778 31 N -0.420 5.420 32 C 0.071 3.929 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.063 0.937 46 H 0.241 0.759 47 H 0.016 0.984 48 H 0.006 0.994 49 H 0.079 0.921 50 H 0.111 0.889 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.334 2.875 15.941 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.244 4.244 4 C -0.170 4.170 5 C -0.195 4.195 6 C 0.398 3.602 7 O -0.476 6.476 8 N -0.332 5.332 9 C -0.023 4.023 10 C -0.123 4.123 11 H 0.110 0.890 12 C -0.097 4.097 13 H 0.108 0.892 14 C -0.002 4.002 15 C -0.122 4.122 16 H 0.086 0.914 17 C -0.130 4.130 18 C -0.151 4.151 19 C 0.070 3.930 20 H 0.089 0.911 21 N -0.341 5.341 22 C -0.367 4.367 23 H 0.099 0.901 24 C -0.261 4.261 25 N -0.603 5.603 26 Si 0.799 3.201 27 H -0.189 1.189 28 H -0.222 1.222 29 H -0.228 1.228 30 C 0.097 3.903 31 N -0.094 5.094 32 C -0.070 4.070 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.181 0.819 37 H 0.186 0.814 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.034 0.966 48 H 0.024 0.976 49 H 0.097 0.903 50 H 0.129 0.871 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.489 1.786 15.903 23.706 hybrid contribution 0.993 -0.093 -1.434 1.747 sum -16.497 1.693 14.468 22.008 Atomic orbital electron populations 1.20520 0.85144 1.04796 1.03872 1.21247 0.95417 0.85272 1.05526 1.21012 0.92114 0.98967 1.12310 1.22126 0.99379 0.91752 1.03763 1.19906 0.84316 0.94096 1.21183 1.16703 0.81569 0.85970 0.75992 1.90746 1.86035 1.16471 1.54313 1.48484 1.04244 1.12448 1.68062 1.23063 0.97928 0.82357 0.98958 1.22598 0.97218 0.97336 0.95124 0.88979 1.21944 0.99502 0.94765 0.93535 0.89189 1.22417 0.81702 0.97440 0.98670 1.21711 0.95639 0.98554 0.96270 0.91436 1.21271 0.95725 0.96889 0.99092 1.21672 0.98250 0.96031 0.99141 1.20595 0.87494 0.95963 0.88928 0.91103 1.44925 1.36908 1.18188 1.34054 1.19735 1.12187 0.98568 1.06197 0.90117 1.25546 0.99635 0.98810 1.02088 1.70302 1.26611 1.22522 1.40826 0.85125 0.77544 0.78551 0.78841 1.18933 1.22193 1.22811 1.20621 0.92603 0.84908 0.92162 1.43965 1.04457 1.07452 1.53494 1.22190 1.01904 0.78874 1.04035 0.89817 0.90607 0.88084 0.81880 0.81421 0.87717 0.88061 0.91357 0.88553 0.95438 0.92419 0.95185 0.91866 0.94916 0.96594 0.97596 0.90289 0.87082 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 9.81 71.23 0.70 -0.19 16 2 C 0.04 0.81 6.87 41.34 0.28 1.10 16 3 C -0.22 -4.31 10.71 22.01 0.24 -4.07 16 4 C -0.14 -3.26 9.20 22.57 0.21 -3.05 16 5 C -0.08 -2.25 6.63 40.35 0.27 -1.98 16 6 C 0.61 18.71 5.98 86.45 0.52 19.23 16 7 O -0.59 -21.56 14.74 -4.34 -0.06 -21.62 16 8 N -0.60 -16.46 1.74 -812.59 -1.41 -17.87 16 9 C 0.10 2.30 4.35 86.53 0.38 2.68 16 10 C -0.10 -3.09 3.37 -9.86 -0.03 -3.12 16 11 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 12 C -0.08 -2.45 3.14 -9.91 -0.03 -2.48 16 13 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 14 C 0.12 3.24 5.84 86.55 0.51 3.75 16 15 C -0.10 -3.99 2.73 -10.57 -0.03 -4.02 16 16 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 17 C -0.09 -3.58 5.08 30.59 0.16 -3.43 16 18 C -0.11 -4.22 5.24 30.28 0.16 -4.07 16 19 C 0.18 6.76 2.99 44.55 0.13 6.89 16 20 H 0.07 2.63 8.02 -2.39 -0.02 2.61 16 21 N -0.62 -30.37 2.84 -672.37 -1.91 -32.28 16 22 C -0.24 -12.90 9.99 84.03 0.84 -12.06 16 23 H 0.08 4.19 7.80 -2.91 -0.02 4.16 16 24 C -0.07 -3.88 5.47 84.86 0.46 -3.41 16 25 N -0.95 -57.26 9.71 21.65 0.21 -57.05 16 26 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 30 C 0.22 11.07 4.36 86.35 0.38 11.44 16 31 N -0.42 -9.92 3.16 -519.73 -1.64 -11.56 16 32 C 0.07 1.40 10.02 127.77 1.28 2.69 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.63 7.54 -2.39 -0.02 0.61 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.17 3.16 5.05 -2.91 -0.01 3.15 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 2.27 4.10 -2.39 -0.01 2.26 16 40 H 0.07 2.07 7.02 -2.39 -0.02 2.05 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.06 2.19 5.07 -2.38 -0.01 2.18 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 2.17 5.06 -2.38 -0.01 2.16 16 46 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 47 H 0.02 0.88 7.30 -2.39 -0.02 0.87 16 48 H 0.01 0.34 7.12 -2.39 -0.02 0.32 16 49 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.11 1.42 7.34 -2.39 -0.02 1.40 16 51 H 0.07 1.80 6.85 -2.39 -0.02 1.79 16 Total: -1.00 -72.79 370.91 4.55 -68.23 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.94 Total: 18.36 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.41 Total: 5.89 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -4.75 Total: -118.76 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.79 4.55 -68.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087333997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.772 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds