Wall clock time and date at job start Wed Apr 1 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39838 * 126.46368 * 2 1 4 4 C 1.35448 * 107.86520 * 180.26189 * 3 2 1 5 5 N 1.35537 * 108.87297 * 359.74337 * 4 3 2 6 6 C 1.46501 * 125.67735 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64499 * 359.97438 * 5 4 3 8 8 C 1.46676 * 126.23357 * 180.02562 * 7 5 4 9 9 O 1.21697 * 120.00105 * 92.96734 * 8 7 5 10 10 N 1.34778 * 119.99966 * 272.96073 * 8 7 5 11 11 C 1.49323 * 125.96989 * 184.87313 * 10 8 7 12 12 C 1.54317 * 102.93285 * 153.17327 * 11 10 8 13 13 H 1.08997 * 113.87088 * 284.27024 * 12 11 10 14 14 C 1.56678 * 96.38292 * 44.06516 * 12 11 10 15 15 H 1.09000 * 99.68900 * 58.11817 * 14 12 11 16 16 C 1.47960 * 103.53236 * 311.78239 * 14 12 11 17 17 C 1.48515 * 108.63706 * 166.04676 * 14 12 11 18 18 H 1.09004 * 113.91732 * 153.38088 * 17 14 12 19 19 C 1.54961 * 108.92199 * 25.09963 * 17 14 12 20 20 C 1.55463 * 107.61242 * 288.98275 * 19 17 14 21 21 C 1.53529 * 115.90714 * 150.64276 * 12 11 10 22 22 H 1.09007 * 112.54893 * 50.92373 * 21 12 11 23 23 C 1.54285 * 109.79841 * 283.90394 * 21 12 11 24 24 N 1.49014 * 106.66646 * 287.33232 * 23 21 12 25 25 C 1.36938 * 124.35606 * 216.16123 * 24 23 21 26 26 H 1.08001 * 120.00014 * 157.57000 * 25 24 23 27 27 C 1.38808 * 120.00140 * 337.56694 * 25 24 23 28 28 N 1.31623 * 119.99779 * 2.76524 * 27 25 24 29 29 Si 1.86796 * 120.00075 * 182.77145 * 27 25 24 30 30 H 1.48497 * 109.47406 * 90.00124 * 29 27 25 31 31 H 1.48505 * 109.47254 * 209.99722 * 29 27 25 32 32 H 1.48494 * 109.47194 * 329.99616 * 29 27 25 33 33 H 1.09000 * 109.47232 * 270.18783 * 1 2 3 34 34 H 1.09004 * 109.46742 * 30.18278 * 1 2 3 35 35 H 1.08998 * 109.47497 * 150.18185 * 1 2 3 36 36 H 1.07997 * 126.06076 * 0.02562 * 3 2 1 37 37 H 1.08003 * 125.56453 * 179.71837 * 4 3 2 38 38 H 1.09005 * 109.46936 * 274.83473 * 6 5 4 39 39 H 1.09003 * 109.46952 * 34.83139 * 6 5 4 40 40 H 1.08994 * 109.47329 * 154.83337 * 6 5 4 41 41 H 1.09000 * 110.72205 * 34.81271 * 11 10 8 42 42 H 1.09005 * 110.87758 * 271.60388 * 11 10 8 43 43 H 1.08999 * 110.52317 * 152.20692 * 16 14 12 44 44 H 1.08999 * 110.52310 * 274.95273 * 16 14 12 45 45 H 1.09005 * 109.69200 * 48.52985 * 19 17 14 46 46 H 1.09002 * 109.69667 * 169.10991 * 19 17 14 47 47 H 1.09000 * 110.06252 * 274.57367 * 20 19 17 48 48 H 1.09006 * 109.62522 * 153.56772 * 20 19 17 49 49 H 1.08998 * 110.01638 * 46.62207 * 23 21 12 50 50 H 1.08999 * 110.01280 * 167.94954 * 23 21 12 51 51 H 0.97006 * 119.99670 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6926 -0.0059 5 7 3.6283 -0.6627 -0.0039 6 6 4.8224 -1.5114 -0.0092 7 6 2.3262 -1.1090 0.0041 8 6 1.8897 -2.5093 0.0092 9 8 1.6622 -3.0720 1.0640 10 7 1.7404 -3.1729 -1.1544 11 6 1.2086 -4.5593 -1.3114 12 6 0.6200 -4.5440 -2.7378 13 1 -0.3317 -4.0184 -2.8167 14 6 1.8191 -3.7951 -3.4131 15 1 2.6276 -4.4831 -3.1660 16 6 2.0618 -2.6469 -2.5120 17 6 1.6906 -3.9252 -4.8869 18 1 2.1566 -3.1128 -5.4446 19 6 0.2001 -4.1553 -5.2430 20 6 -0.1788 -5.5894 -4.7776 21 6 0.6266 -5.8876 -3.4807 22 1 0.1918 -6.6940 -2.8900 23 6 2.0522 -6.2016 -3.9800 24 7 2.3192 -5.2787 -5.1190 25 6 3.0411 -5.6147 -6.2331 26 1 2.9029 -5.0647 -7.1523 27 6 3.9506 -6.6620 -6.1810 28 7 4.0798 -7.3671 -5.0771 29 14 4.9912 -7.0707 -7.6774 30 1 6.2575 -6.2967 -7.6262 31 1 5.2991 -8.5234 -7.6845 32 1 4.2444 -6.7170 -8.9112 33 1 -0.3634 0.0034 1.0276 34 1 -0.3633 0.8884 -0.5167 35 1 -0.3634 -0.8916 -0.5110 36 1 2.0137 2.1547 0.0004 37 1 4.4973 1.3250 -0.0117 38 1 5.1630 -1.6529 -1.0349 39 1 5.6105 -1.0334 0.5727 40 1 4.5822 -2.4793 0.4306 41 1 0.4302 -4.7595 -0.5751 42 1 2.0100 -5.2940 -1.2328 43 1 3.1059 -2.3378 -2.5595 44 1 1.4042 -1.8157 -2.7665 45 1 -0.4185 -3.4216 -4.7261 46 1 0.0608 -4.0604 -6.3199 47 1 0.0808 -6.3138 -5.5495 48 1 -1.2476 -5.6361 -4.5689 49 1 2.7739 -6.0275 -3.1819 50 1 2.1103 -7.2370 -4.3156 51 1 4.7156 -8.0988 -5.0406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:44 Heat of formation + Delta-G solvation = 97.450578 kcal Electronic energy + Delta-G solvation = -32004.941283 eV Core-core repulsion = 28100.776329 eV Total energy + Delta-G solvation = -3904.164954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53459 -40.94683 -38.58807 -35.93388 -33.77039 -33.11594 -31.18290 -30.82801 -29.90609 -29.64212 -28.32612 -27.46472 -25.76863 -25.27588 -23.81187 -21.79712 -21.58463 -20.97817 -20.36285 -20.18584 -18.54277 -17.36623 -17.26668 -16.82913 -16.27522 -15.74315 -15.27308 -15.06952 -14.85393 -14.66464 -14.29959 -14.11867 -13.59212 -13.41274 -13.34008 -13.19151 -12.89314 -12.82297 -12.55413 -12.21718 -12.08717 -12.04217 -11.99471 -11.70553 -11.55330 -11.45361 -11.30976 -11.04590 -10.92273 -10.90635 -10.60390 -10.33237 -10.17200 -10.09186 -9.86781 -9.50502 -9.31955 -9.16368 -8.59514 -8.53817 -8.48213 -8.08698 -6.76447 -5.81396 -3.21146 1.89565 2.28777 2.78500 2.93819 3.22406 3.34033 3.40603 3.41538 4.36546 4.42042 4.61584 4.74755 4.90930 4.95351 5.01064 5.14538 5.20231 5.27191 5.31445 5.32494 5.42592 5.48304 5.59213 5.65061 5.69845 5.72471 5.75774 5.77998 5.85531 5.94128 5.98404 6.01882 6.05948 6.11794 6.22431 6.29361 6.32454 6.34319 6.39723 6.45591 6.69276 6.74732 6.84513 6.90217 7.00715 7.06168 7.10655 7.18949 7.32817 7.56506 7.61148 7.74860 8.15739 8.23801 9.10546 9.70188 10.40868 11.27990 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003453 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.002394 B = 8106.994418 C = 8813.489531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.119 4.119 3 C -0.200 4.200 4 C 0.002 3.998 5 N -0.422 5.422 6 C 0.068 3.932 7 C -0.030 4.030 8 C 0.605 3.395 9 O -0.538 6.538 10 N -0.609 5.609 11 C 0.113 3.887 12 C -0.101 4.101 13 H 0.087 0.913 14 C -0.166 4.166 15 H 0.097 0.903 16 C 0.143 3.857 17 C 0.187 3.813 18 H 0.076 0.924 19 C -0.123 4.123 20 C -0.092 4.092 21 C -0.112 4.112 22 H 0.074 0.926 23 C 0.179 3.821 24 N -0.601 5.601 25 C -0.231 4.231 26 H 0.071 0.929 27 C 0.000 4.000 28 N -0.915 5.915 29 Si 0.905 3.095 30 H -0.289 1.289 31 H -0.291 1.291 32 H -0.281 1.281 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.038 0.962 49 H 0.021 0.979 50 H 0.091 0.909 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 13.138 7.706 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C -0.225 4.225 4 C -0.131 4.131 5 N -0.097 5.097 6 C -0.074 4.074 7 C -0.144 4.144 8 C 0.391 3.609 9 O -0.414 6.414 10 N -0.343 5.343 11 C -0.008 4.008 12 C -0.120 4.120 13 H 0.106 0.894 14 C -0.185 4.185 15 H 0.115 0.885 16 C 0.021 3.979 17 C 0.081 3.919 18 H 0.094 0.906 19 C -0.162 4.162 20 C -0.130 4.130 21 C -0.132 4.132 22 H 0.093 0.907 23 C 0.054 3.946 24 N -0.326 5.326 25 C -0.360 4.360 26 H 0.088 0.912 27 C -0.198 4.198 28 N -0.561 5.561 29 Si 0.735 3.265 30 H -0.216 1.216 31 H -0.218 1.218 32 H -0.206 1.206 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.183 0.817 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.056 0.944 49 H 0.039 0.961 50 H 0.109 0.891 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.837 12.399 8.305 15.409 hybrid contribution 0.908 -0.180 -0.727 1.177 sum -2.929 12.219 7.578 14.674 Atomic orbital electron populations 1.20169 0.89916 1.02064 1.01768 1.19702 0.95211 0.90898 1.06812 1.20621 0.91690 0.98311 1.11852 1.21822 0.99359 0.82408 1.09528 1.43809 1.05025 1.06303 1.54611 1.22149 0.85859 0.95482 1.03888 1.20004 0.84027 0.93327 1.17010 1.16726 0.77879 0.83632 0.82624 1.90828 1.51849 1.68254 1.30487 1.49666 1.62877 1.15838 1.05948 1.22486 0.98355 0.82182 0.97739 1.23130 0.97927 0.98589 0.92316 0.89441 1.21759 1.01799 0.97740 0.97212 0.88471 1.20542 0.99870 0.96696 0.80811 1.20499 0.92213 0.89676 0.89526 0.90642 1.22834 0.97380 0.96173 0.99838 1.22192 0.96179 0.97307 0.97289 1.22671 1.00987 0.94424 0.95167 0.90741 1.21439 0.87788 0.96304 0.89021 1.46078 1.61929 1.05041 1.19587 1.19081 1.13664 1.14623 0.88632 0.91159 1.25034 0.98056 0.99713 0.96971 1.69893 1.38017 1.22127 1.26057 0.86234 0.80773 0.77237 0.82217 1.21590 1.21784 1.20607 0.91756 0.91520 0.92341 0.84275 0.81730 0.90128 0.89411 0.89763 0.90732 0.90480 0.91803 0.91681 0.93547 0.92775 0.91161 0.94352 0.96086 0.89117 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.20 36.00 0.37 -0.58 16 2 C -0.12 -1.59 6.21 -104.16 -0.65 -2.24 16 3 C -0.20 -2.29 10.76 -39.98 -0.43 -2.72 16 4 C 0.00 0.02 11.38 -16.91 -0.19 -0.17 16 5 N -0.42 -5.26 3.16 -120.23 -0.38 -5.65 16 6 C 0.07 0.68 10.98 59.85 0.66 1.34 16 7 C -0.03 -0.45 5.85 -81.98 -0.48 -0.93 16 8 C 0.60 10.11 6.63 -12.85 -0.09 10.02 16 9 O -0.54 -10.65 17.44 5.19 0.09 -10.56 16 10 N -0.61 -9.56 3.42 -172.82 -0.59 -10.15 16 11 C 0.11 1.78 6.27 -1.78 -0.01 1.77 16 12 C -0.10 -1.56 2.85 -87.67 -0.25 -1.81 16 13 H 0.09 1.29 6.98 -51.93 -0.36 0.92 16 14 C -0.17 -2.76 2.56 -93.27 -0.24 -3.00 16 15 H 0.10 1.95 3.94 -51.93 -0.20 1.75 16 16 C 0.14 2.12 6.36 -5.05 -0.03 2.09 16 17 C 0.19 3.45 4.54 -66.54 -0.30 3.14 16 18 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 19 C -0.12 -2.02 5.73 -24.39 -0.14 -2.16 16 20 C -0.09 -1.56 5.55 -24.07 -0.13 -1.70 16 21 C -0.11 -1.94 3.84 -88.32 -0.34 -2.28 16 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 23 C 0.18 3.90 4.10 -1.98 -0.01 3.89 16 24 N -0.60 -13.65 2.22 -160.57 -0.36 -14.01 16 25 C -0.23 -5.94 10.15 -15.06 -0.15 -6.09 16 26 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 27 C 0.00 -0.01 5.44 -17.43 -0.09 -0.11 16 28 N -0.91 -25.25 10.52 55.49 0.58 -24.67 16 29 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 32 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.72 7.96 -51.93 -0.41 0.31 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.17 1.20 8.06 -52.48 -0.42 0.77 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 41 H 0.07 1.15 8.09 -51.93 -0.42 0.72 16 42 H 0.08 1.30 7.33 -51.93 -0.38 0.92 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.67 7.14 -51.93 -0.37 0.30 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.02 0.51 5.89 -51.93 -0.31 0.20 16 50 H 0.09 2.29 6.49 -51.93 -0.34 1.95 16 51 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -30.38 390.00 -10.53 -40.91 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.22 Total: 3.70 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.74 Total: -54.47 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.38 -10.53 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.363 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds