Wall clock time and date at job start Wed Apr 1 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39844 * 126.46030 * 2 1 4 4 C 1.35450 * 107.86603 * 180.29935 * 3 2 1 5 5 N 1.35526 * 108.87283 * 359.73872 * 4 3 2 6 6 C 1.46505 * 125.67610 * 180.02562 * 5 4 3 7 7 C 1.37656 * 108.64630 * 0.02562 * 5 4 3 8 8 C 1.46673 * 126.23435 * 180.02562 * 7 5 4 9 9 O 1.21698 * 120.00025 * 234.51803 * 8 7 5 10 10 N 1.34779 * 120.00205 * 54.51167 * 8 7 5 11 11 C 1.48143 * 127.83833 * 172.34217 * 10 8 7 12 12 C 1.54390 * 104.60100 * 219.56813 * 11 10 8 13 13 H 1.09006 * 110.81110 * 216.51657 * 12 11 10 14 14 C 1.54164 * 105.01439 * 336.20948 * 12 11 10 15 15 H 1.09005 * 111.54117 * 239.63864 * 14 12 11 16 16 C 1.48144 * 127.83206 * 352.39429 * 10 8 7 17 17 C 1.53273 * 109.34873 * 116.55597 * 14 12 11 18 18 H 1.09007 * 110.48988 * 182.42676 * 17 14 12 19 19 C 1.53309 * 108.75035 * 60.43924 * 17 14 12 20 20 C 1.54184 * 109.75650 * 299.63300 * 19 17 14 21 21 C 1.52982 * 109.06677 * 93.80983 * 12 11 10 22 22 H 1.09007 * 109.63782 * 65.45102 * 21 12 11 23 23 C 1.53606 * 109.30277 * 305.25339 * 21 12 11 24 24 N 1.47638 * 106.72695 * 300.54617 * 23 21 12 25 25 C 1.36946 * 122.05697 * 179.97438 * 24 23 21 26 26 H 1.07994 * 119.99710 * 226.57612 * 25 24 23 27 27 C 1.38811 * 119.99877 * 46.57980 * 25 24 23 28 28 N 1.31621 * 119.99932 * 341.51997 * 27 25 24 29 29 Si 1.86801 * 119.99908 * 161.51852 * 27 25 24 30 30 H 1.48500 * 109.47135 * 265.03807 * 29 27 25 31 31 H 1.48498 * 109.47291 * 145.04052 * 29 27 25 32 32 H 1.48497 * 109.47235 * 25.03851 * 29 27 25 33 33 H 1.09004 * 109.46850 * 268.36577 * 1 2 3 34 34 H 1.08997 * 109.46945 * 28.37149 * 1 2 3 35 35 H 1.09002 * 109.46801 * 148.36970 * 1 2 3 36 36 H 1.08002 * 126.05759 * 0.02562 * 3 2 1 37 37 H 1.08002 * 125.55918 * 179.76979 * 4 3 2 38 38 H 1.09001 * 109.47313 * 273.44332 * 6 5 4 39 39 H 1.08998 * 109.46786 * 33.44718 * 6 5 4 40 40 H 1.08999 * 109.46751 * 153.44440 * 6 5 4 41 41 H 1.09006 * 110.40959 * 338.34671 * 11 10 8 42 42 H 1.08998 * 110.40977 * 100.66918 * 11 10 8 43 43 H 1.09000 * 110.41704 * 21.59294 * 16 10 8 44 44 H 1.09009 * 110.50877 * 259.20972 * 16 10 8 45 45 H 1.09008 * 109.45307 * 59.36189 * 19 17 14 46 46 H 1.09002 * 109.45740 * 179.29177 * 19 17 14 47 47 H 1.09003 * 109.20993 * 240.53472 * 20 19 17 48 48 H 1.09002 * 110.21442 * 120.46355 * 20 19 17 49 49 H 1.08998 * 110.12966 * 181.17003 * 23 21 12 50 50 H 1.09001 * 109.87157 * 59.77829 * 23 21 12 51 51 H 0.97009 * 119.99775 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0067 5 7 3.6284 -0.6624 -0.0051 6 6 4.8227 -1.5110 -0.0103 7 6 2.3263 -1.1089 0.0022 8 6 1.8899 -2.5092 0.0067 9 8 1.1205 -2.9095 -0.8470 10 7 2.3411 -3.3527 0.9562 11 6 1.9022 -4.7428 1.2199 12 6 1.8778 -4.8578 2.7593 13 1 2.2022 -5.8482 3.0789 14 6 2.8556 -3.7745 3.2563 15 1 3.6703 -4.2068 3.8373 16 6 3.3879 -3.0995 1.9735 17 6 2.0866 -2.7355 4.0800 18 1 2.7534 -1.9369 4.4052 19 6 1.4446 -3.4371 5.2825 20 6 0.4688 -4.5251 4.7913 21 6 0.4658 -4.5500 3.2612 22 1 -0.2237 -5.3172 2.9086 23 6 0.0260 -3.1775 2.7300 24 7 1.0030 -2.1930 3.2360 25 6 0.9066 -0.8581 2.9460 26 1 1.7798 -0.3114 2.6223 27 6 -0.3136 -0.2078 3.0683 28 7 -1.4301 -0.9041 3.1019 29 14 -0.3712 1.6557 3.1853 30 1 -0.4129 2.0610 4.6133 31 1 -1.5850 2.1579 2.4927 32 1 0.8384 2.2296 2.5430 33 1 -0.3633 -0.0293 1.0273 34 1 -0.3633 0.9042 -0.4883 35 1 -0.3633 -0.8750 -0.5390 36 1 2.0136 2.1549 0.0004 37 1 4.4972 1.3253 -0.0120 38 1 5.1493 -1.6724 -1.0376 39 1 5.6184 -1.0218 0.5514 40 1 4.5887 -2.4702 0.4515 41 1 0.9061 -4.9110 0.8103 42 1 2.6119 -5.4526 0.7951 43 1 3.5133 -2.0283 2.1316 44 1 4.3325 -3.5512 1.6701 45 1 2.2219 -3.9021 5.8890 46 1 0.9046 -2.7057 5.8838 47 1 -0.5342 -4.2963 5.1514 48 1 0.7727 -5.5016 5.1684 49 1 -0.9714 -2.9352 3.0968 50 1 0.0324 -3.1826 1.6400 51 1 -2.2828 -0.4495 3.1870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:48 Heat of formation + Delta-G solvation = 69.835315 kcal Electronic energy + Delta-G solvation = -34667.601195 eV Core-core repulsion = 30762.238753 eV Total energy + Delta-G solvation = -3905.362442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.07850 -40.15912 -37.81362 -35.40440 -33.36494 -33.03289 -31.54588 -30.38649 -30.01763 -29.29831 -27.61437 -27.04237 -25.19934 -24.59927 -23.95528 -21.86127 -21.27478 -20.80860 -20.39128 -19.50594 -18.14240 -17.17471 -16.96918 -16.23606 -15.90038 -15.46937 -14.95021 -14.68419 -14.54267 -14.48913 -14.17398 -13.55830 -13.03972 -12.85588 -12.79987 -12.68196 -12.36524 -12.27608 -12.18694 -12.01937 -11.86177 -11.70306 -11.45784 -11.35142 -11.27976 -11.16016 -11.03238 -10.89570 -10.71163 -10.67521 -10.61011 -10.39266 -10.11614 -9.83277 -9.43609 -9.36206 -9.29765 -9.10980 -8.24801 -8.10872 -7.79672 -7.23894 -6.31309 -5.62590 -3.24895 2.39277 3.14034 3.38431 3.42340 3.51892 3.52683 3.56686 4.00237 4.53636 4.80810 4.92832 5.02153 5.20561 5.26170 5.29873 5.39833 5.44463 5.50226 5.51261 5.62100 5.77063 5.80098 5.82123 5.87500 5.95957 5.98606 6.02237 6.08682 6.15086 6.22187 6.28859 6.40929 6.44440 6.47953 6.53089 6.64714 6.72898 6.77268 6.84136 6.86306 6.90077 7.08457 7.10538 7.14481 7.39795 7.51888 7.58697 7.77541 7.85280 7.89849 8.11356 8.15319 8.67727 8.81463 9.35067 9.88286 10.66225 11.30154 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.008239 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.301887 B = 3397.573797 C = 4881.143451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.206 4.206 4 C -0.004 4.004 5 N -0.435 5.435 6 C 0.056 3.944 7 C -0.029 4.029 8 C 0.635 3.365 9 O -0.545 6.545 10 N -0.596 5.596 11 C 0.114 3.886 12 C -0.083 4.083 13 H 0.071 0.929 14 C -0.114 4.114 15 H 0.073 0.927 16 C 0.114 3.886 17 C 0.176 3.824 18 H 0.065 0.935 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.101 4.101 22 H 0.057 0.943 23 C 0.160 3.840 24 N -0.577 5.577 25 C -0.240 4.240 26 H 0.061 0.939 27 C 0.038 3.962 28 N -0.881 5.881 29 Si 0.859 3.141 30 H -0.292 1.292 31 H -0.291 1.291 32 H -0.266 1.266 33 H 0.119 0.881 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.020 0.980 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 -5.128 -0.750 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.231 4.231 4 C -0.136 4.136 5 N -0.113 5.113 6 C -0.086 4.086 7 C -0.139 4.139 8 C 0.425 3.575 9 O -0.422 6.422 10 N -0.328 5.328 11 C -0.009 4.009 12 C -0.103 4.103 13 H 0.090 0.910 14 C -0.135 4.135 15 H 0.091 0.909 16 C -0.009 4.009 17 C 0.068 3.932 18 H 0.083 0.917 19 C -0.163 4.163 20 C -0.135 4.135 21 C -0.120 4.120 22 H 0.076 0.924 23 C 0.036 3.964 24 N -0.301 5.301 25 C -0.369 4.369 26 H 0.079 0.921 27 C -0.161 4.161 28 N -0.523 5.523 29 Si 0.687 3.313 30 H -0.219 1.219 31 H -0.218 1.218 32 H -0.191 1.191 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.038 0.962 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.546 -5.450 -1.344 12.838 hybrid contribution 0.014 1.118 0.316 1.162 sum 11.560 -4.332 -1.027 12.388 Atomic orbital electron populations 1.20792 0.89876 1.00134 1.06137 1.19580 0.95415 0.90132 1.00638 1.20611 0.91940 0.98329 1.12267 1.21568 0.98814 0.82578 1.10683 1.43697 1.04901 1.05916 1.56804 1.22398 0.86641 0.96635 1.02901 1.19760 0.82928 0.93080 1.18166 1.16437 0.79412 0.82366 0.79312 1.90766 1.36910 1.76575 1.37984 1.48537 1.39097 1.13527 1.31674 1.22267 1.00504 0.82657 0.95425 1.21994 0.96782 0.97657 0.93818 0.91030 1.22778 0.97314 0.97140 0.96247 0.90885 1.22415 0.88941 1.01702 0.87885 1.20699 0.90816 0.92440 0.89212 0.91685 1.22194 0.97871 0.97677 0.98596 1.21505 0.99630 0.97022 0.95316 1.21621 0.94401 1.00440 0.95547 0.92437 1.21581 0.95625 0.83755 0.95422 1.44079 1.27850 1.03249 1.54926 1.18772 0.94829 0.83654 1.39693 0.92127 1.25500 0.96179 0.96454 0.98007 1.69908 0.97034 1.33908 1.51473 0.87018 0.77989 0.88644 0.77657 1.21894 1.21775 1.19084 0.86373 0.94020 0.92340 0.85160 0.82612 0.91622 0.90031 0.88844 0.90199 0.92525 0.89706 0.92878 0.94186 0.92214 0.92605 0.93934 0.90309 0.96199 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 9.85 36.01 0.35 -2.25 16 2 C -0.05 -1.09 4.55 -104.16 -0.47 -1.56 16 3 C -0.21 -3.91 10.76 -39.98 -0.43 -4.34 16 4 C 0.00 -0.07 11.38 -16.92 -0.19 -0.26 16 5 N -0.44 -7.21 2.80 -120.23 -0.34 -7.54 16 6 C 0.06 0.67 10.12 59.85 0.61 1.27 16 7 C -0.03 -0.59 5.10 -81.98 -0.42 -1.00 16 8 C 0.63 13.54 5.99 -12.85 -0.08 13.46 16 9 O -0.55 -13.36 16.71 5.19 0.09 -13.27 16 10 N -0.60 -10.76 1.86 -170.82 -0.32 -11.07 16 11 C 0.11 1.86 5.78 -2.41 -0.01 1.85 16 12 C -0.08 -1.27 3.16 -89.29 -0.28 -1.55 16 13 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.11 -1.72 3.21 -89.13 -0.29 -2.01 16 15 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.11 1.74 3.88 -2.39 -0.01 1.73 16 17 C 0.18 3.26 2.88 -66.99 -0.19 3.06 16 18 H 0.06 1.24 8.02 -51.92 -0.42 0.82 16 19 C -0.12 -2.15 5.88 -25.95 -0.15 -2.30 16 20 C -0.10 -1.64 5.76 -26.09 -0.15 -1.79 16 21 C -0.10 -1.81 2.66 -90.30 -0.24 -2.05 16 22 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 23 C 0.16 3.61 4.77 -3.10 -0.01 3.60 16 24 N -0.58 -12.78 1.95 -163.16 -0.32 -13.09 16 25 C -0.24 -5.93 7.51 -15.06 -0.11 -6.05 16 26 H 0.06 1.58 6.90 -52.49 -0.36 1.22 16 27 C 0.04 1.00 3.21 -17.43 -0.06 0.94 16 28 N -0.88 -24.05 10.84 55.49 0.60 -23.45 16 29 Si 0.86 20.90 28.26 -169.99 -4.80 16.09 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 31 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 32 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 33 H 0.12 2.99 2.79 -51.93 -0.14 2.84 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.42 7.33 -51.93 -0.38 1.04 16 36 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 37 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.14 3.57 -51.93 -0.19 0.95 16 41 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.46 6.11 -51.93 -0.32 1.15 16 44 H 0.05 0.65 6.82 -51.92 -0.35 0.30 16 45 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 2.08 6.00 -51.93 -0.31 1.77 16 50 H 0.02 0.51 5.32 -51.93 -0.28 0.23 16 51 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -30.25 364.13 -9.49 -39.74 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.75 Total: 6.36 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.14 Total: 0.75 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.37 Total: -55.16 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.80 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.25 -9.49 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.575 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds